Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing liuA gene

Properties
Regulog: LiuR - Ralstonia
Regulator type: Transcription factor
Regulator family: MerR
Regulation mode:
Biological process: Branched-chain amino acid degradation
Effector:
Phylum: Proteobacteria/beta
Built upon 57 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Cupriavidus taiwanensis
Position: -90
Score: 6.63969
Sequence: ATTGACGTTTACGTAAAC
Position: -84
Score: 5.53588
Sequence: GTTTACGTAAACGTAAAT
Locus tag: RALTA_A0109
Name: paaI
Funciton: Phenylacetic acid degradation-related protein
Locus tag: RALTA_A0110
Name: liuA
Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Butyryl-CoA dehydrogenase (EC 1.3.99.2)
Locus tag: RALTA_A0111
Name: aceK
Funciton: Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)
Locus tag: RALTA_A0112
Name: cah
Funciton: Carbonic anhydrase (EC 4.2.1.1)
Locus tag: RALTA_A0113
Name: ivdA
Funciton: Acetyl-CoA C-acyltransferase (EC 2.3.1.16)
Locus tag: RALTA_A0114
Name: null
Funciton: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Locus tag: RALTA_A0115
Name: ivdC
Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Butyryl-CoA dehydrogenase (EC 1.3.99.2)
Locus tag: RALTA_A0116
Name: null
Funciton: 2-Hydroxychromene-2-carboxylate isomerase
Locus tag: RALTA_A0117
Name: null
Funciton: Putative phosphatase YieH
Locus tag: RALTA_A0118
Name: null
Funciton: hypothetical protein
Locus tag: RALTA_A0119
Name: null
Funciton: Maleylacetoacetate isomerase (EC 5.2.1.2) / Glutathione S-transferase
Locus tag: RALTA_A0120
Name: liuB
Funciton: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
Locus tag: RALTA_A0121
Name: null
Funciton: Dienelactone hydrolase or related enzyme
Locus tag: RALTA_A0122
Name: liuC
Funciton: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
paaI-liuA-aceK-cah-ivdA-RALTA_A0114-ivdC-RALTA_A0116-RALTA_A0117-RALTA_A0118-RALTA_A0119-liuB-RALTA_A0121-liuC -90 6.6 ATTGACGTTTACGTAAAC RALTA_A0109
-84 5.5 GTTTACGTAAACGTAAAT
Ralstonia eutropha H16
Position: -93
Score: 6.63969
Sequence: ATTGACGTTTACGTAAAC
Position: -87
Score: 5.34588
Sequence: GTTTACGTAAACGTCAAT
Locus tag: H16_A0166
Name: paaI
Funciton: Phenylacetic acid degradation-related protein
Locus tag: H16_A0167
Name: liuA
Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Butyryl-CoA dehydrogenase (EC 1.3.99.2)
Locus tag: H16_A0168
Name: aceK
Funciton: Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)
Locus tag: H16_A0169
Name: cah
Funciton: Carbonic anhydrase (EC 4.2.1.1)
Locus tag: H16_A0170
Name: ivdA
Funciton: Acetyl-CoA C-acyltransferase (EC 2.3.1.16)
Locus tag: H16_A0171
Name: h16_A0171
Funciton: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Locus tag: H16_A0172
Name: ivdC
Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Butyryl-CoA dehydrogenase (EC 1.3.99.2)
Locus tag: H16_A0173
Name: h16_A0173
Funciton: 2-Hydroxychromene-2-carboxylate isomerase
Locus tag: H16_A0174
Name: h16_A0174
Funciton: Putative phosphatase YieH
Locus tag: H16_A0175
Name: h16_A0175
Funciton: hypothetical protein
Locus tag: H16_A0176
Name: h16_A0176
Funciton: Maleylacetoacetate isomerase (EC 5.2.1.2) / Glutathione S-transferase
Locus tag: H16_A0177
Name: liuB
Funciton: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
Locus tag: H16_A0178
Name: h16_A0178
Funciton: Dienelactone hydrolase or related enzyme
Locus tag: H16_A0179
Name: liuC
Funciton: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
paaI-liuA-aceK-cah-ivdA-h16_A0171-ivdC-h16_A0173-h16_A0174-h16_A0175-h16_A0176-liuB-h16_A0178-liuC -93 6.6 ATTGACGTTTACGTAAAC H16_A0166
-87 5.3 GTTTACGTAAACGTCAAT
Ralstonia eutropha JMP134
Position: -58
Score: 6.63969
Sequence: ATTGACGTTTACGTAAAC
Position: -52
Score: 5.34588
Sequence: GTTTACGTAAACGTCAAT
Locus tag: Reut_A0134
Name: paaI
Funciton: Phenylacetic acid degradation-related protein
Locus tag: Reut_A0135
Name: liuA
Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Butyryl-CoA dehydrogenase (EC 1.3.99.2)
Locus tag: Reut_A0136
Name: aceK
Funciton: Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)
Locus tag: Reut_A0137
Name: cah
Funciton: Carbonic anhydrase (EC 4.2.1.1)
Locus tag: Reut_A0138
Name: ivdA
Funciton: Acetyl-CoA C-acyltransferase (EC 2.3.1.16)
Locus tag: Reut_A0139
Name: null
Funciton: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Locus tag: Reut_A0140
Name: ivdC
Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Butyryl-CoA dehydrogenase (EC 1.3.99.2)
Locus tag: Reut_A0141
Name: null
Funciton: 2-Hydroxychromene-2-carboxylate isomerase
Locus tag: Reut_A0142
Name: null
Funciton: Putative phosphatase YieH
Locus tag: Reut_A0143
Name: null
Funciton: hypothetical protein
Locus tag: Reut_A0144
Name: null
Funciton: Maleylacetoacetate isomerase (EC 5.2.1.2) / Glutathione S-transferase
Locus tag: Reut_A0145
Name: liuB
Funciton: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
Locus tag: Reut_A0146
Name: null
Funciton: Dienelactone hydrolase or related enzyme
paaI-liuA-aceK-cah-ivdA-Reut_A0139-ivdC-Reut_A0141-Reut_A0142-Reut_A0143-Reut_A0144-liuB-Reut_A0146 -58 6.6 ATTGACGTTTACGTAAAC Reut_A0134
-52 5.3 GTTTACGTAAACGTCAAT
Ralstonia metallidurans CH34
Position: -87
Score: 6.63969
Sequence: ATTGACGTTTACGTAAAC
Position: -81
Score: 5.34588
Sequence: GTTTACGTAAACGTCAAT
Locus tag: Rmet_0103
Name: liuA
Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Butyryl-CoA dehydrogenase (EC 1.3.99.2)
Locus tag: Rmet_0104
Name: aceK
Funciton: Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)
Locus tag: Rmet_0105
Name: cah
Funciton: Carbonic anhydrase (EC 4.2.1.1)
Locus tag: Rmet_0106
Name: ivdA
Funciton: Acetyl-CoA C-acyltransferase (EC 2.3.1.16)
Locus tag: Rmet_0107
Name: null
Funciton: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Locus tag: Rmet_0108
Name: ivdC
Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Butyryl-CoA dehydrogenase (EC 1.3.99.2)
Locus tag: Rmet_0109
Name: null
Funciton: 2-Hydroxychromene-2-carboxylate isomerase
Locus tag: Rmet_0110
Name: null
Funciton: Putative phosphatase YieH
Locus tag: Rmet_0111
Name: null
Funciton: hypothetical protein
Locus tag: Rmet_0112
Name: null
Funciton: Dienelactone hydrolase or related enzyme
Locus tag: Rmet_0113
Name: liuC
Funciton: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
liuA-aceK-cah-ivdA-Rmet_0107-ivdC-Rmet_0109-Rmet_0110-Rmet_0111-Rmet_0112-liuC -87 6.6 ATTGACGTTTACGTAAAC Rmet_0103
-81 5.3 GTTTACGTAAACGTCAAT
Ralstonia pickettii 12J
Position: -150
Score: 6.63969
Sequence: ATTGACGTTTACGTAAAC
Position: -144
Score: 5.34588
Sequence: GTTTACGTAAACGTCAAT
Locus tag: Rpic_0129
Name: liuA
Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Butyryl-CoA dehydrogenase (EC 1.3.99.2)
Locus tag: Rpic_0128
Name: aceK
Funciton: Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)
Locus tag: Rpic_0127
Name: cah
Funciton: Carbonic anhydrase (EC 4.2.1.1)
liuA-aceK-cah -150 6.6 ATTGACGTTTACGTAAAC Rpic_0129
-144 5.3 GTTTACGTAAACGTCAAT
Ralstonia solanacearum GMI1000
Position: -137
Score: 6.58437
Sequence: GTTGACGTTTACGTAAAC
Position: -131
Score: 5.34588
Sequence: GTTTACGTAAACGTCAAT
Locus tag: RS03246
Name: liuA
Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Butyryl-CoA dehydrogenase (EC 1.3.99.2)
Locus tag: RSc0278
Name: aceK
Funciton: Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)
Locus tag: RS03244
Name: cah
Funciton: Carbonic anhydrase (EC 4.2.1.1)
liuA-aceK-cah -137 6.6 GTTGACGTTTACGTAAAC RS03246
-131 5.3 GTTTACGTAAACGTCAAT
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