Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing rhaJ gene

Properties
Regulog: RhaR - Rhizobiales
Regulator type: Transcription factor
Regulator family: DeoR
Regulation mode: repressor
Biological process: Rhamnose utilization
Effector: Rhamnose
Phylum: Proteobacteria
Built upon 39 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Agrobacterium tumefaciens str. C58 (Cereon)
Position: -111
Score: 6.3558
Sequence: TCAATCA-(3)-ACGATCA
Position: -60
Score: 6.65774
Sequence: TTGATCG-(3)-TTGATTG
Locus tag: Atu3486
Name: rhaR
Funciton: Predicted transcriptional regulator for rhamnose utilization, DeoR family
Locus tag: Atu3487
Name: rhaF
Funciton: L-rhamnose ABC transporter, periplasmic rhamnose-binding protein
Locus tag: Atu3488
Name: rhaG
Funciton: L-rhamnose ABC transporter, duplicated ATP-binding component
Locus tag: Atu3489
Name: rhaH
Funciton: L-rhamnose ABC transporter, permease component 1
Locus tag: Atu3490
Name: rhaJ
Funciton: L-rhamnose ABC transporter, permease component 2
Locus tag: Atu3491
Name: rhaM
Funciton: L-rhamnose mutarotase
Locus tag: Atu3492
Name: rhaK
Funciton: putative rhamnulokinase
rhaR-rhaF-rhaG-rhaH-rhaJ-rhaM-rhaK -111 6.4 TCAATCA-(3)-ACGATCA Atu3486
-60 6.7 TTGATCG-(3)-TTGATTG
Mesorhizobium loti MAFF303099
Position: -113
Score: 6.3558
Sequence: TCAATCA-(3)-ACGATCA
Position: -107
Score: 5.15555
Sequence: ATAAACG-(3)-AAGATCG
Position: -103
Score: 6.66797
Sequence: ACGATCA-(3)-TCGATCA
Position: -62
Score: 6.65774
Sequence: ATGATCG-(3)-ATGATTG
Locus tag: mll5707
Name: rhaR
Funciton: Predicted transcriptional regulator for rhamnose utilization, DeoR family
Locus tag: mll5706
Name: rhaF
Funciton: L-rhamnose ABC transporter, periplasmic rhamnose-binding protein
Locus tag: mll5705
Name: rhaG
Funciton: L-rhamnose ABC transporter, duplicated ATP-binding component
Locus tag: mll5704
Name: rhaH
Funciton: L-rhamnose ABC transporter, permease component 1
Locus tag: mll5703
Name: rhaJ
Funciton: L-rhamnose ABC transporter, permease component 2
Locus tag: mll5702
Name: rhaM
Funciton: L-rhamnose mutarotase
Locus tag: mll5701
Name: rhaK
Funciton: putative rhamnulokinase
rhaR-rhaF-rhaG-rhaH-rhaJ-rhaM-rhaK -113 6.4 TCAATCA-(3)-ACGATCA mll5707
-107 5.2 ATAAACG-(3)-AAGATCG
-103 6.7 ACGATCA-(3)-TCGATCA
-62 6.7 ATGATCG-(3)-ATGATTG
Rhizobium etli CFN 42
Position: -115
Score: 6.42506
Sequence: TCAATCG-(3)-ACGATCA
Position: -105
Score: 6.40869
Sequence: ACGATCA-(3)-TCGATTA
Position: -64
Score: 6.65774
Sequence: ATGATCG-(3)-ATGATTG
Locus tag: RHE_PE00290
Name: rhaR
Funciton: Predicted transcriptional regulator for rhamnose utilization, DeoR family
Locus tag: RHE_PE00289
Name: rhaF
Funciton: L-rhamnose ABC transporter, periplasmic rhamnose-binding protein
Locus tag: RHE_PE00288
Name: rhaG
Funciton: L-rhamnose ABC transporter, duplicated ATP-binding component
Locus tag: RHE_PE00287
Name: rhaH
Funciton: L-rhamnose ABC transporter, permease component 1
Locus tag: RHE_PE00286
Name: rhaJ
Funciton: L-rhamnose ABC transporter, permease component 2
Locus tag: RHE_PE00285
Name: rhaM
Funciton: L-rhamnose mutarotase
Locus tag: RHE_PE00284
Name: rhaK
Funciton: putative rhamnulokinase
rhaR-rhaF-rhaG-rhaH-rhaJ-rhaM-rhaK -115 6.4 TCAATCG-(3)-ACGATCA RHE_PE00290
-105 6.4 ACGATCA-(3)-TCGATTA
-64 6.7 ATGATCG-(3)-ATGATTG
Rhizobium leguminosarum bv. viciae 3841
Position: -113
Score: 6.42506
Sequence: TCAATCG-(3)-ACGATCA
Position: -103
Score: 6.40869
Sequence: ACGATCA-(3)-TCGATTA
Position: -72
Score: 5.637
Sequence: ATGAAAA-(3)-ATGATCG
Position: -62
Score: 6.65774
Sequence: ATGATCG-(3)-TTGATTG
Locus tag: pRL110414
Name: rhaR
Funciton: Predicted transcriptional regulator for rhamnose utilization, DeoR family
Locus tag: pRL110413
Name: rhaF
Funciton: L-rhamnose ABC transporter, periplasmic rhamnose-binding protein
Locus tag: pRL110412
Name: rhaG
Funciton: L-rhamnose ABC transporter, duplicated ATP-binding component
Locus tag: pRL110411
Name: rhaH
Funciton: L-rhamnose ABC transporter, permease component 1
Locus tag: pRL110410
Name: rhaJ
Funciton: L-rhamnose ABC transporter, permease component 2
Locus tag: pRL110409
Name: rhaM
Funciton: L-rhamnose mutarotase
Locus tag: pRL110408
Name: rhaK
Funciton: putative rhamnulokinase
rhaR-rhaF-rhaG-rhaH-rhaJ-rhaM-rhaK -113 6.4 TCAATCG-(3)-ACGATCA pRL110414
-103 6.4 ACGATCA-(3)-TCGATTA
-72 5.6 ATGAAAA-(3)-ATGATCG
-62 6.7 ATGATCG-(3)-TTGATTG
Rhizobium sp. NGR234
Position: -114
Score: 6.3558
Sequence: TCAATCA-(3)-ACGATCA
Position: -73
Score: 5.637
Sequence: ATGAAAA-(3)-ATGATCG
Position: -63
Score: 6.09321
Sequence: ATGATCG-(3)-CTGATTG
Position: -53
Score: 5.26477
Sequence: CTGATTG-(3)-ATGCTCG
Locus tag: NGR_c02440
Name: rhaR
Funciton: Predicted transcriptional regulator for rhamnose utilization, DeoR family
Locus tag: NGR_c02450
Name: rhaF
Funciton: L-rhamnose ABC transporter, periplasmic rhamnose-binding protein
Locus tag: NGR_c02460
Name: rhaG
Funciton: L-rhamnose ABC transporter, duplicated ATP-binding component
Locus tag: NGR_c02470
Name: rhaH
Funciton: L-rhamnose ABC transporter, permease component 1
Locus tag: NGR_c02480
Name: rhaJ
Funciton: L-rhamnose ABC transporter, permease component 2
Locus tag: NGR_c02490
Name: rhaM
Funciton: L-rhamnose mutarotase
Locus tag: NGR_c02500
Name: rhaK
Funciton: putative rhamnulokinase
rhaR-rhaF-rhaG-rhaH-rhaJ-rhaM-rhaK -114 6.4 TCAATCA-(3)-ACGATCA NGR_c02440
-73 5.6 ATGAAAA-(3)-ATGATCG
-63 6.1 ATGATCG-(3)-CTGATTG
-53 5.3 CTGATTG-(3)-ATGCTCG
Sinorhizobium meliloti 1021
Position: -114
Score: 6.3558
Sequence: TCAATCA-(3)-ACGATCA
Position: -63
Score: 5.83393
Sequence: ATGATTG-(3)-GTGATTG
Position: -53
Score: 5.26477
Sequence: GTGATTG-(3)-ATGCTCG
Locus tag: SMc02323
Name: rhaR
Funciton: Predicted transcriptional regulator for rhamnose utilization, DeoR family
Locus tag: SMc02324
Name: rhaF
Funciton: L-rhamnose ABC transporter, periplasmic rhamnose-binding protein
Locus tag: SMc02325
Name: rhaG
Funciton: L-rhamnose ABC transporter, duplicated ATP-binding component
Locus tag: SMc03000
Name: rhaH
Funciton: L-rhamnose ABC transporter, permease component 1
Locus tag: SMc03001
Name: rhaJ
Funciton: L-rhamnose ABC transporter, permease component 2
Locus tag: SMc03002
Name: rhaM
Funciton: L-rhamnose mutarotase
Locus tag: SMc03003
Name: rhaK
Funciton: putative rhamnulokinase
rhaR-rhaF-rhaG-rhaH-rhaJ-rhaM-rhaK -114 6.4 TCAATCA-(3)-ACGATCA SMc02323
-63 5.8 ATGATTG-(3)-GTGATTG
-53 5.3 GTGATTG-(3)-ATGCTCG
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