Orthologous regulated operons containing xylB gene
| Regulog: | XylR - Bacteroidaceae |
| Regulator type: | Transcription factor |
| Regulator family: | NrtR |
| Regulation mode: | repressor |
| Biological process: | Xylose utilization |
| Effector: | Xylose |
| Phylum: | Bacteroidetes |
| Operon | Position | Score | Sequence | Locus Tag of the First Gene |
|---|---|---|---|---|
| Bacteroides cellulosilyticus DSM 14838 | ||||
|
Position: -200
Score: 5.6437 Sequence: CTTATTGTACTTCCTACAATTAC
Position: -152
Score: 5.70014 Sequence: CATATTGTACTTTCAACGATAAG
Position: -119
Score: 5.76829 Sequence: GATATTGTAAAATGTACGATATC
Locus tag: BACCELL_04758
Name: xylR Funciton: Predicted regulator of xylose utilization, NrtR family
Locus tag: BACCELL_04759
Name: xylB Funciton: Xylulose kinase (EC 2.7.1.17)
Locus tag: BACCELL_04760
Name: xylA Funciton: Xylose isomerase (EC 5.3.1.5)
Locus tag: BACCELL_04761
Name: xylE Funciton: D-xylose proton-symporter XylE |
||||
| xylR-xylB-xylA-xylE | -200 | 5.6 | CTTATTGTACTTCCTACAATTAC | BACCELL_04758 |
| -152 | 5.7 | CATATTGTACTTTCAACGATAAG | ||
| -119 | 5.8 | GATATTGTAAAATGTACGATATC | ||
| Bacteroides dorei DSM 17855 | ||||
|
Position: -103
Score: 5.1313 Sequence: TATATTGTAGTGTATATGATAAG
Position: -70
Score: 4.85895 Sequence: CATATTGTATAATAGATGATATT
Locus tag: BACDOR_00865
Name: xylR Funciton: Predicted regulator of xylose utilization, NrtR family
Locus tag: BACDOR_00866
Name: xylB Funciton: Xylulose kinase (EC 2.7.1.17)
Locus tag: BACDOR_00867
Name: xylA Funciton: Xylose isomerase (EC 5.3.1.5) |
||||
| xylR-xylB-xylA | -103 | 5.1 | TATATTGTAGTGTATATGATAAG | BACDOR_00865 |
| -70 | 4.9 | CATATTGTATAATAGATGATATT | ||
| Bacteroides eggerthii DSM 20697 | ||||
|
Position: -208
Score: 5.10241 Sequence: GTTATTGTGCCTATTACAATTAC
Position: -161
Score: 6.10023 Sequence: CATATTGTATTTTGTACGATAAC
Position: -128
Score: 5.42431 Sequence: GATATTGTAAAAGATATGATATG
Locus tag: BACEGG_02642
Name: xylR Funciton: Predicted regulator of xylose utilization, NrtR family
Locus tag: BACEGG_02643
Name: xylB Funciton: Xylulose kinase (EC 2.7.1.17)
Locus tag: BACEGG_02644
Name: xylA Funciton: Xylose isomerase (EC 5.3.1.5)
Locus tag: BACEGG_02645
Name: xylE Funciton: D-xylose proton-symporter XylE |
||||
| xylR-xylB-xylA-xylE | -208 | 5.1 | GTTATTGTGCCTATTACAATTAC | BACEGG_02642 |
| -161 | 6.1 | CATATTGTATTTTGTACGATAAC | ||
| -128 | 5.4 | GATATTGTAAAAGATATGATATG | ||
| Bacteroides fragilis NCTC 9343 | ||||
|
Position: -280
Score: 5.40138 Sequence: CATACCCTATAAAATACAATAAG
Position: -197
Score: 5.09863 Sequence: CTTTCTGTACTTTCTACAATTAC
Position: -150
Score: 5.66167 Sequence: CATATTGTTATCGATACAATAAG
Position: -117
Score: 5.39923 Sequence: CTTAGTGTAAAATTTACGATATG
Locus tag: BF2354
Name: xylR Funciton: Predicted regulator of xylose utilization, NrtR family
Locus tag: BF2355
Name: xylB Funciton: Xylulose kinase (EC 2.7.1.17)
Locus tag: BF2356
Name: xylA Funciton: Xylose isomerase (EC 5.3.1.5)
Locus tag: BF2357
Name: xylE Funciton: D-xylose proton-symporter XylE |
||||
| xylR-xylB-xylA-xylE | -280 | 5.4 | CATACCCTATAAAATACAATAAG | BF2354 |
| -197 | 5.1 | CTTTCTGTACTTTCTACAATTAC | ||
| -150 | 5.7 | CATATTGTTATCGATACAATAAG | ||
| -117 | 5.4 | CTTAGTGTAAAATTTACGATATG | ||
| Bacteroides ovatus ATCC 8483 | ||||
|
Position: -279
Score: 6.05913 Sequence: CATATCGTTTAAAATACAATAAG
Position: -195
Score: 5.64662 Sequence: GTTTTTGTACTTTATACAATTAC
Position: -149
Score: 5.42208 Sequence: CATATTGTAATTCGTAAGATAAC
Position: -116
Score: 5.4423 Sequence: CATATTGTAGAATGTATGATATG
Locus tag: BACOVA_02532
Name: xylR Funciton: Predicted regulator of xylose utilization, NrtR family
Locus tag: BACOVA_02533
Name: xylB Funciton: Xylulose kinase (EC 2.7.1.17)
Locus tag: BACOVA_02534
Name: xylA Funciton: Xylose isomerase (EC 5.3.1.5)
Locus tag: BACOVA_02535
Name: xylE Funciton: D-xylose proton-symporter XylE |
||||
| xylR-xylB-xylA-xylE | -279 | 6.1 | CATATCGTTTAAAATACAATAAG | BACOVA_02532 |
| -195 | 5.6 | GTTTTTGTACTTTATACAATTAC | ||
| -149 | 5.4 | CATATTGTAATTCGTAAGATAAC | ||
| -116 | 5.4 | CATATTGTAGAATGTATGATATG | ||
| Bacteroides plebeius DSM 17135 | ||||
|
Position: -147
Score: 5.76348 Sequence: CATATTGTATGAACTACAAAAAC
Position: -114
Score: 5.20014 Sequence: GATATTGTATCAAATAAGATATT
Locus tag: BACPLE_02263
Name: xylR Funciton: Predicted regulator of xylose utilization, NrtR family
Locus tag: BACPLE_02264
Name: xylB Funciton: Xylulose kinase (EC 2.7.1.17)
Locus tag: BACPLE_02265
Name: xylA Funciton: Xylose isomerase (EC 5.3.1.5)
Locus tag: BACPLE_02266
Name: xylE Funciton: D-xylose proton-symporter XylE |
||||
| xylR-xylB-xylA-xylE | -147 | 5.8 | CATATTGTATGAACTACAAAAAC | BACPLE_02263 |
| -114 | 5.2 | GATATTGTATCAAATAAGATATT | ||
| Bacteroides stercoris ATCC 43183 | ||||
|
Position: -208
Score: 5.50095 Sequence: GTTATTGTATCTGCTACAATTAC
Position: -161
Score: 6.25464 Sequence: CATATTGTATTTTATACGATAAC
Position: -128
Score: 5.83882 Sequence: GATATTGTAAGATATACGATATG
Locus tag: BACSTE_01380
Name: xylR Funciton: Predicted regulator of xylose utilization, NrtR family
Locus tag: BACSTE_01381
Name: xylB Funciton: Xylulose kinase (EC 2.7.1.17) |
||||
| xylR-xylB | -208 | 5.5 | GTTATTGTATCTGCTACAATTAC | BACSTE_01380 |
| -161 | 6.3 | CATATTGTATTTTATACGATAAC | ||
| -128 | 5.8 | GATATTGTAAGATATACGATATG | ||
| Bacteroides thetaiotaomicron VPI-5482 | ||||
|
Position: -280
Score: 5.88067 Sequence: GATATCGTTTGAAATACAATAAG
Position: -196
Score: 5.6939 Sequence: CTTTTTGTACTTTATACAATTAC
Position: -150
Score: 5.07643 Sequence: CATATTGTAATTCAGAAGATAAC
Position: -117
Score: 5.4423 Sequence: CATATTGTAGATTGTATGATATG
Locus tag: BT0791
Name: xylR Funciton: Predicted regulator of xylose utilization, NrtR family
Locus tag: BT0792
Name: xylB Funciton: Xylulose kinase (EC 2.7.1.17)
Locus tag: BT0793
Name: xylA Funciton: Xylose isomerase (EC 5.3.1.5)
Locus tag: BT0794
Name: xylE Funciton: D-xylose proton-symporter XylE |
||||
| xylR-xylB-xylA-xylE | -280 | 5.9 | GATATCGTTTGAAATACAATAAG | BT0791 |
| -196 | 5.7 | CTTTTTGTACTTTATACAATTAC | ||
| -150 | 5.1 | CATATTGTAATTCAGAAGATAAC | ||
| -117 | 5.4 | CATATTGTAGATTGTATGATATG | ||
| Bacteroides uniformis ATCC 8492 | ||||
|
Position: -209
Score: 5.69098 Sequence: CTTATTGTACTTCCTACAATTAG
Position: -161
Score: 5.92556 Sequence: CATATTGTATTCCATACGATAAC
Position: -128
Score: 5.65223 Sequence: GATATTGTATAAAGTAAGATATG
Locus tag: BACUNI_00695
Name: xylR Funciton: Predicted regulator of xylose utilization, NrtR family
Locus tag: BACUNI_00694
Name: xylB Funciton: Xylulose kinase (EC 2.7.1.17)
Locus tag: BACUNI_00693
Name: xylA Funciton: Xylose isomerase (EC 5.3.1.5)
Locus tag: BACUNI_00692
Name: xylE Funciton: D-xylose proton-symporter XylE |
||||
| xylR-xylB-xylA-xylE | -209 | 5.7 | CTTATTGTACTTCCTACAATTAG | BACUNI_00695 |
| -161 | 5.9 | CATATTGTATTCCATACGATAAC | ||
| -128 | 5.7 | GATATTGTATAAAGTAAGATATG | ||
| Bacteroides vulgatus ATCC 8482 | ||||
|
Position: -169
Score: 5.1313 Sequence: TATATTGTAGTGTATATGATAAG
Position: -136
Score: 4.52607 Sequence: GATATTGTATGATGGATGATATT
Locus tag: BVU_3955
Name: xylR Funciton: Predicted regulator of xylose utilization, NrtR family
Locus tag: BVU_3954
Name: xylB Funciton: Xylulose kinase (EC 2.7.1.17)
Locus tag: BVU_3953
Name: xylA Funciton: Xylose isomerase (EC 5.3.1.5) |
||||
| xylR-xylB-xylA | -169 | 5.1 | TATATTGTAGTGTATATGATAAG | BVU_3955 |
| -136 | 4.5 | GATATTGTATGATGGATGATATT | ||