Orthologous regulated operons containing paaA gene
| Regulog: | PaaR - Comamonadaceae |
| Regulator type: | Transcription factor |
| Regulator family: | TetR |
| Regulation mode: | repressor |
| Biological process: | Phenylacetic acid degradation |
| Effector: | Phenylacetyl-CoA |
| Phylum: | Betaproteobacteria |
| Operon | Position | Score | Sequence | Locus Tag of the First Gene |
|---|---|---|---|---|
| Delftia acidovorans SPH-1 | ||||
|
Position: -63
Score: 4.56736 Sequence: ATAATCCTACCGTCCGGTCGGT
Position: -59
Score: 5.72992 Sequence: TCCTACCGTCCGGTCGGTCAAT
Locus tag: Daci_0809
Name: paaK Funciton: Phenylacetate-coenzyme A ligase (EC 6.2.1.30)
Locus tag: Daci_0810
Name: paaA Funciton: Phenylacetate-CoA oxygenase, PaaA subunit
Locus tag: Daci_0811
Name: paaB Funciton: Phenylacetate-CoA oxygenase, PaaB subunit
Locus tag: Daci_0812
Name: paaC Funciton: Phenylacetate-CoA oxygenase, PaaC subunit
Locus tag: Daci_0813
Name: paaD Funciton: Phenylacetate-CoA oxygenase, PaaD subunit
Locus tag: Daci_0814
Name: paaE Funciton: Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.-) |
||||
| paaK-paaA-paaB-paaC-paaD-paaE | -63 | 4.6 | ATAATCCTACCGTCCGGTCGGT | Daci_0809 |
| -59 | 5.7 | TCCTACCGTCCGGTCGGTCAAT | ||
| Leptothrix cholodnii SP-6 | ||||
|
Position: -48
Score: 6.29162 Sequence: ATTTACCGACCGGACGGTCAAT
Locus tag: Lcho_3574
Name: paaA Funciton: Phenylacetate-CoA oxygenase, PaaA subunit
Locus tag: Lcho_3573
Name: paaB Funciton: Phenylacetate-CoA oxygenase, PaaB subunit
Locus tag: Lcho_3572
Name: paaC Funciton: Phenylacetate-CoA oxygenase, PaaC subunit
Locus tag: Lcho_3571
Name: paaD Funciton: Phenylacetate-CoA oxygenase, PaaD subunit
Locus tag: Lcho_3570
Name: null Funciton: hypothetical protein
Locus tag: Lcho_3569
Name: paaE Funciton: Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.-)
Locus tag: Lcho_3568
Name: paaZ Funciton: Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ |
||||
| paaA-paaB-paaC-paaD-Lcho_3570-paaE-paaZ | -48 | 6.3 | ATTTACCGACCGGACGGTCAAT | Lcho_3574 |
| Methylibium petroleiphilum PM1 | ||||
|
Position: -85
Score: 5.66643 Sequence: GTCTACCGACTGGTCGGTCAAT
Locus tag: Mpe_A0984
Name: paaF Funciton: Enoyl-CoA hydratase (EC 4.2.1.17)
Locus tag: Mpe_A0985
Name: paaY Funciton: thioesterase superfamily protein
Locus tag: Mpe_A0986
Name: paaK Funciton: Phenylacetate-coenzyme A ligase (EC 6.2.1.30)
Locus tag: Mpe_A0987
Name: paaA Funciton: Phenylacetate-CoA oxygenase, PaaA subunit
Locus tag: Mpe_A0988
Name: paaB Funciton: Phenylacetate-CoA oxygenase, PaaB subunit
Locus tag: Mpe_A0989
Name: paaC Funciton: Phenylacetate-CoA oxygenase, PaaC subunit
Locus tag: Mpe_A0990
Name: paaD Funciton: Phenylacetate-CoA oxygenase, PaaD subunit
Locus tag: Mpe_A0991
Name: paaE Funciton: Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.-)
Locus tag: Mpe_A0992
Name: paaR Funciton: Transcriptional regulator of phenylacetic acid degradation, TetR family |
||||
| paaF-paaY-paaK-paaA-paaB-paaC-paaD-paaE-paaR | -85 | 5.7 | GTCTACCGACTGGTCGGTCAAT | Mpe_A0984 |
| Variovorax paradoxus S110 | ||||
|
Position: -52
Score: 4.62868 Sequence: TAAAATCTACCGGACGGTCGGT
Position: -48
Score: 5.49521 Sequence: ATCTACCGGACGGTCGGTCAAT
Locus tag: Vapar_1238
Name: paaF Funciton: Enoyl-CoA hydratase (EC 4.2.1.17)
Locus tag: Vapar_1237
Name: paaY Funciton: thioesterase superfamily protein
Locus tag: Vapar_1236
Name: paaK Funciton: Phenylacetate-coenzyme A ligase (EC 6.2.1.30)
Locus tag: Vapar_1235
Name: paaA Funciton: Phenylacetate-CoA oxygenase, PaaA subunit
Locus tag: Vapar_1234
Name: paaB Funciton: Phenylacetate-CoA oxygenase, PaaB subunit
Locus tag: Vapar_1233
Name: paaC Funciton: Phenylacetate-CoA oxygenase, PaaC subunit
Locus tag: Vapar_1232
Name: paaD Funciton: Phenylacetate-CoA oxygenase, PaaD subunit
Locus tag: Vapar_1231
Name: paaE Funciton: Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.-)
Locus tag: Vapar_1230
Name: livK Funciton: Putative branched-chain amino acid ABC transporter, substrate-binding component
Locus tag: Vapar_1229
Name: livH Funciton: Putative branched-chain amino acid ABC transporter, permease component
Locus tag: Vapar_1228
Name: livM Funciton: Putative branched-chain amino acid ABC transporter, ATPase component
Locus tag: Vapar_1227
Name: livF Funciton: Putative branched-chain amino acid ABC transporter, permease component 2
Locus tag: Vapar_1226
Name: paaZ Funciton: Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ |
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| paaF-paaY-paaK-paaA-paaB-paaC-paaD-paaE-livK-livH-livM-livF-paaZ | -52 | 4.6 | TAAAATCTACCGGACGGTCGGT | Vapar_1238 |
| -48 | 5.5 | ATCTACCGGACGGTCGGTCAAT | ||
| Verminephrobacter eiseniae EF01-2 | ||||
|
Position: -102
Score: 5.49521 Sequence: ATCTACCGCACGGTCGGTCAAT
Locus tag: Veis_3942
Name: paaF Funciton: Enoyl-CoA hydratase (EC 4.2.1.17)
Locus tag: Veis_3943
Name: paaY Funciton: thioesterase superfamily protein
Locus tag: Veis_3944
Name: paaK Funciton: Phenylacetate-coenzyme A ligase (EC 6.2.1.30)
Locus tag: Veis_3945
Name: paaA Funciton: Phenylacetate-CoA oxygenase, PaaA subunit
Locus tag: Veis_3946
Name: paaB Funciton: Phenylacetate-CoA oxygenase, PaaB subunit
Locus tag: Veis_3947
Name: paaC Funciton: Phenylacetate-CoA oxygenase, PaaC subunit
Locus tag: Veis_3948
Name: paaD Funciton: Phenylacetate-CoA oxygenase, PaaD subunit
Locus tag: Veis_3949
Name: paaE Funciton: Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.-)
Locus tag: Veis_3950
Name: paaR Funciton: Transcriptional regulator of phenylacetic acid degradation, TetR family
Locus tag: Veis_3951
Name: livK Funciton: Putative branched-chain amino acid ABC transporter, substrate-binding component
Locus tag: Veis_3952
Name: livH Funciton: Putative branched-chain amino acid ABC transporter, permease component
Locus tag: Veis_3953
Name: livM Funciton: Putative branched-chain amino acid ABC transporter, ATPase component |
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| paaF-paaY-paaK-paaA-paaB-paaC-paaD-paaE-paaR-livK-livH-livM | -102 | 5.5 | ATCTACCGCACGGTCGGTCAAT | Veis_3942 |