Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing rocD gene

Properties
Regulog: RocR - Bacillales
Regulator type: Transcription factor
Regulator family: Fis
Regulation mode: activator
Biological process: Arginine degradation; Ornithine degradation
Effector: Ornithine; L-citrulline
Phylum: Firmicutes
Built upon 26 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Bacillus amyloliquefaciens FZB42
Position: -177
Score: 8.71467
Sequence: CGCAAAAA-(1)-ATTTTGCG
Locus tag: RBAM_037250
Name: rocD
Funciton: Ornithine aminotransferase (EC 2.6.1.13)
Locus tag: RBAM_037240
Name: rocE
Funciton: Arginine/ornithine/gamma-aminobutyrate permease
Locus tag: RBAM_037230
Name: rocF
Funciton: Arginase (EC 3.5.3.1)
rocD-rocE-rocF -177 8.7 CGCAAAAA-(1)-ATTTTGCG RBAM_037250
Bacillus clausii KSM-K16
Position: -173
Score: 8.4603
Sequence: CGCAAAAA-(1)-ATTTTTCG
Position: -140
Score: 7.69112
Sequence: TGCAAAAA-(1)-TTTTTTCT
Locus tag: ABC0017
Name: rocD
Funciton: Ornithine aminotransferase (EC 2.6.1.13)
rocD -173 8.5 CGCAAAAA-(1)-ATTTTTCG ABC0017
-140 7.7 TGCAAAAA-(1)-TTTTTTCT
Bacillus halodurans C-125
Position: -215
Score: 7.31976
Sequence: TGCAAATT-(1)-TTTTTTCG
Position: -172
Score: 7.96304
Sequence: AGAAAAAT-(1)-ATTTTTCG
Locus tag: BH3943
Name: rocD
Funciton: Ornithine aminotransferase (EC 2.6.1.13)
Locus tag: BH3942
Name: rocG
Funciton: NAD-specific glutamate dehydrogenase (EC 1.4.1.2)
Locus tag: BH3941
Name: BH3941
Funciton: Hypothetical protein
Locus tag: BH3940
Name: rocA
Funciton: Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)
rocD-rocG-BH3941-rocA -215 7.3 TGCAAATT-(1)-TTTTTTCG BH3943
-172 8 AGAAAAAT-(1)-ATTTTTCG
Bacillus licheniformis DSM 13
Position: -142
Score: 8.71467
Sequence: CGCAAAAT-(0)-TTTTTGCG
Locus tag: BLi00422
Name: rocD
Funciton: Ornithine aminotransferase (EC 2.6.1.13)
Locus tag: BLi00423
Name: rocE
Funciton: Arginine/ornithine/gamma-aminobutyrate permease
Locus tag: BLi00424
Name: rocF
Funciton: Arginase (EC 3.5.3.1)
rocD-rocE-rocF -142 8.7 CGCAAAAT-(0)-TTTTTGCG BLi00422
Bacillus pumilus SAFR-032
Position: -137
Score: 7.20123
Sequence: TGCAAAGA-(1)-ATTTTGCT
Locus tag: BPUM_3060
Name: rocD
Funciton: Ornithine aminotransferase (EC 2.6.1.13)
Locus tag: BPUM_3059
Name: rocC
Funciton: Arginine/ornithine permease
rocD-rocC -137 7.2 TGCAAAGA-(1)-ATTTTGCT BPUM_3060
Bacillus subtilis subsp. subtilis str. 168
Position: -175
Score: 7.89341
Sequence: TGCAAAAG-(1)-ATTTTGCA
Locus tag: BSU40340
Name: rocD
Funciton: Ornithine aminotransferase (EC 2.6.1.13)
Locus tag: BSU40330
Name: rocE
Funciton: Arginine/ornithine/gamma-aminobutyrate permease
Locus tag: BSU40320
Name: rocF
Funciton: Arginase (EC 3.5.3.1)
rocD-rocE-rocF -175 7.9 TGCAAAAG-(1)-ATTTTGCA BSU40340
Geobacillus kaustophilus HTA426
Position: -168
Score: 7.69112
Sequence: TGAAAAAA-(1)-TTTTTGCT
Position: -93
Score: 8.05777
Sequence: TGAAAAAT-(1)-ATTTTGCA
Position: -37
Score: 7.68317
Sequence: CGAAAAAT-(1)-TTTTTGCC
Locus tag: GK0186
Name: rocC
Funciton: Arginine/ornithine permease
Locus tag: GK0187
Name: rocA
Funciton: Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)
Locus tag: GK0188
Name: rocD
Funciton: Ornithine aminotransferase (EC 2.6.1.13)
Locus tag: GK0189
Name: rocG
Funciton: NAD-specific glutamate dehydrogenase (EC 1.4.1.2)
rocC-rocA-rocD-rocG -168 7.7 TGAAAAAA-(1)-TTTTTGCT GK0186
-93 8.1 TGAAAAAT-(1)-ATTTTGCA
-37 7.7 CGAAAAAT-(1)-TTTTTGCC
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