Regulons of Oceanicaulis alexandrii HTCC2633
|
Allows to visualize regulome content in the context of metabolic pathways |
|
| Type |
Regulator |
Effector |
Pathway |
Operons |
Sites |
| TF |
Fur |
Iron ion, (Fe2+) |
Iron homeostasis |
14 |
17 |
| TF |
HrcA |
Heat shock |
Heat shock response |
1 |
1 |
| TF |
HutC |
cis-Urocanic acid |
Histidine utilization |
2 |
2 |
| TF |
IscR |
Iron-sulfur cluster redox state; Iron ion, (Fe2+) |
Iron-sulfur cluster biogenesis; Iron homeostasis |
3 |
1 |
| TF |
LexA |
DNA damage |
SOS response |
10 |
7 |
| TF |
LiuR |
|
Branched-chain amino acid degradation |
2 |
1 |
| TF |
NadQ |
|
NAD biosynthesis |
2 |
3 |
| TF |
NrdR |
Deoxyribonucleotides |
Deoxyribonucleotide biosynthesis |
3 |
2 |
| TF |
PdxR3 |
|
Metabolite transport; Pyridoxine/pyridoxal homeostasis |
1 |
1 |
| TF |
SahR |
S-adenosylhomocysteine |
Methionine metabolism |
4 |
3 |
| TF |
SoxR |
Paraquat |
Superoxide stress response |
2 |
2 |
| TF |
Zur |
Zinc ion, (Zn2+) |
Zinc homeostasis |
2 |
1 |
| RNA |
Cobalamin |
Adenosylcobalamin |
Cobalamin biosynthesis |
1 |
1 |
| RNA |
Glycine |
Glycine |
Glycine metabolism |
1 |
2 |
| RNA |
S15 |
|
Ribosome biogenesis |
1 |
1 |
| RNA |
SAM_alpha |
S-adenosylmethionine |
Methionine biosynthesis |
1 |
1 |
| RNA |
TPP |
Thiamine pyrophosphate |
Thiamine biosynthesis |
3 |
1 |
| RNA |
mini-ykkC |
|
Multidrug resistance |
1 |
1 |
Export
|
Regulated Genes
|
[ Tab delimited format ]
|
DOWNLOAD
|
|
Regulatory Sites
|
[ FASTA format ]
|
DOWNLOAD
|
