Profile of regulator TPP in Alteromonadales

Properties
Regulator family:	RF00059
Regulation mode:
Biological process:
Effector:
Regulog:	TPP - Alteromonadales

Member of regulog collections

By taxonomy - Alteromonadales
By RNA motif - TPP

Transcription factor binding sites

	Locus Tag	Name	Position	Score	Sequence
Pseudoalteromonas atlantica T6c
	Patl_1344	omp_thi	-178	63.6	TAACTACCAAGGGGTGCCGAAAGGCTGAGATTTGTCTCTTAAGAGATATGACCCTTACACCTGATCCGGATAATACCGGCGTAGGAATGGTTATTTCGTTCGCATT
	Patl_1931	thiC	-155	69.5	ACTCGCTCTCGGGGCGCCTTTTTTGGCTGAGATGTAGTAATACAAACCCGTAGAACCTGATCCGACTAGTATCGGCGTAGGAATGAGCAGCACATCCTCACA
Alteromonas macleodii 'Deep ecotype'
	MADE_00146	thiC	-361	77.2	AAATTACTTGTCGGAGTGCTTCACTGGTAACCCAGTAAGCTGAGACCGCGAAAGTGGGATCCGTAGAACCTGATCAGGCTAATACCTGCGAAGGGAACAAGAAAATACAATGT
	MADE_02805	omp_thi	-160	73.8	ACGCTATACCAAGGGGTGTCCGTTTTCGGTCTGAGATCCACTTTAGTGGGAACCCTTAAACCTGATCCGGATAATACCGGCGTAGGAATGGTTCACAACATAGCC
Glaciecola sp. HTCC2999
	GHTCC_010100011239	omp_thi	-154	61	CAGCGTCCAAGGGGTGCTTGAGACACATCATGTGTTGTCGGGCTGAGATCGACAGAAACCCTTTTACCTGATCCGGATAATGCCGGCGTAGGGAATGGAAACACTCACCTGCCC
Colwellia psychrerythraea 34H
	CPS_0250	thiC	-236	69.4	AACACTTGTCGGAGTGCCAAAGGCTGAGATCGCGAAAGCGGGATCCGTAAAACCTGATCAGATTAATATCTGCGTAGGAAACAAGAGAGAGTAATTAAG
	CPS_0067	omp_thi	-469	22.9	GCGTTGAACCAAGGGGTGCGCTGTCATTTAATTATTTTTAACTGATTTGTCGCTGAGAAATATACTCTTTGAACCTGGGCAGAAAATTAGTTTACTTAATTTTTTGGCATAGGGATGGTGGATACCAAGTCC
Alteromonadales bacterium TW-7
	ATW7_18600	thiC	-252	74.9	TATACTTGTCGGAGTGCCTAAGTATGTTGCTTAGGCTGAGATCGCGAAAGCGGGATCCGTGAACCTGATCAGGTTAATACCTGCGTAGGGAACAAGCTGCCTAAAACGGG
Pseudoalteromonas haloplanktis TAC125
	PSHAa0480	thiC	-284	72.6	AATACTTGTCGGAGTGCCTAACTAAATAATTAGTTAAGGCTGAGATCGCGAAAGCGGGATCCGTGAACCTGATCAGGCTAATACCTGCGTAGGGAACAAGCTGCCTAAAATAGG
Pseudoalteromonas tunicata D2
	PTD2_07759	thiC	-263	58.9	GTTACTTGTCGGAGTGCCTAAGTTAGGAAACTAATTATGGCTGAGATCGCGAAAGCGGGATCCGTGAACCTGAACAGACTAATATCTGCGTAGGAAACAAGCTGCCCTCATTCGG
Idiomarina baltica OS145
	OS145_08472	omp_thi	-184	72.3	CCCGAGTACCAAGGGGTGCCTTTTTAGGCTGAGATGCGAAAGCGAACCCTTTTTACCTGATCCGGTTAATACTGGCGTAGGGATGGTAAAGTCTCGCATA
Idiomarina loihiensis L2TR
	IL0765	thiC	-201	83.4	GAATCTTGTCGGAGTGCCGGTAGCTTTCTTAATGAAGTTACCGGCTGAGACCGCAATTGCGGGATCCGTTGAACCTGATCAGGCTAATACCTGCGAAGGGAACAAGAGAGCATCAGCATG
	IL2358	omp_thi	-149	73.8	CCGCTTTACCAAGGGGTGCCGGCAACGGCTGAGATGCATTAGCGAACCCTTAAAACCTGATCCGGTTAATACTGGCGTAGGGATGGTAGAAAACCCGTCT

Export
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Profile of regulator TPP in Alteromonadales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --