Profile of regulator GEMM_RNA_motif in Vibrionales
Properties
| Regulator family: |
RF01051 |
| Regulation mode: |
|
| Biological process: |
Second messenger response |
| Effector: |
Cyclic diguanylate |
| Regulog: |
GEMM_RNA_motif - Vibrionales |
Member of regulog collections
Transcription factor binding sites
|
Locus Tag |
Name |
Position |
Score |
Sequence |
|
Vibrio cholerae O1 biovar eltor str. N16961
|
|
VC1722 |
tfoX |
-199 |
68.7 |
CACGCACAGGGCAAACCATTCGAAAGAGTGGGACGCAAAGCCTCCGGCCTAAACCAGAAGACATGGTAGGTAGCGGGGTTACCGATGG |
|
VCA0811 |
cbp |
-223 |
54.6 |
TCACACTTTGGCAAACCCTTTGAAAAAATGGGACGCAAAGCTTCCGGTCTGTCGGTCAAGAAAGCTCATAAAGCCCTATTACACCTAGGATAGCGGGGTTACCAATTC |
|
Vibrio vulnificus CMCP6
|
|
VV1_2136 |
tfoX |
-205 |
67.8 |
GTCACGCACAGGGCAAACCATTTGAAAAAGTGGGACGCAAAGCCTCCGGCCTAAACCAGACGTTTTTTGGTAGGTAGCGGGGTTACCGAT |
|
VV20044 |
cbp |
-231 |
63.3 |
CATCACACATAGGCAAACCTTCTGAAAAGATGGGACGCAAAGCTTCCGGTCTGTCGGTATTTTTATCATACCCAAGATAGCGGGGCCGCCGCT |
|
Vibrio harveyi ATCC BAA-1116
|
|
VIBHAR_01580 |
tfoX |
-207 |
67.8 |
GTCACGCACAGGGCAAACCATTCGAAAGGGTGGGACGCAAAGCCTCCGGCCTGAACCATCGAATTAGATGGAAGGTAGCGGGGTTACCGAT |
|
Vibrio parahaemolyticus RIMD 2210633
|
|
VPA1598 |
cbp |
-204 |
51.5 |
TCACATTTCGGCAAACCATTCGAAAGGATGGGACGCAAAGCTTCCAGTCTGCCAGCACTGCTTAACTAGTCAACACTAGTGCTTAAGATAACGGGGTTGCCACTTT |
|
VP1028 |
tfoX |
-207 |
69.3 |
GTCACGCACAGGGCAAACCATCCGAAAGGGTGGGACGCAAAGCCTCCGGCCTGAACCATAGTAGTATATGGAAGGTAGCGGGGTTACCGAT |
|
Vibrio shilonii AK1
|
|
VSAK1_04062 |
tfoX |
-204 |
72.7 |
GTCACGCACAGGGCAAACCACTTGAAAGGGTGGGACGCAAAGCCACCGGCCTAAACCAAATTTATTTGATAGGTAGCGGGGTTACCGAT |
|
Vibrio splendidus LGP32
|
|
VS_1087 |
tfoX |
-214 |
72.3 |
GTCACGCACAGGGCAAACCACTTGAAAAAGTGGGACGCAAAGCTTCCGGCCTAAACCACTCGTTGGTATGGTAGCGGGGTTACCGAT |
|
Vibrio fischeri ES114
|
|
VF_1573 |
tfoX |
-210 |
72.7 |
CACGAACATGGCAAACTACATGAAAATGTAGGACGCAAAGCTTCCGGCCTAAGTATTTATATAAGGTAGCGGGGTTGCCGACGG |
|
Vibrio salmonicida LFI1238
|
|
VSAL_I1982 |
tfoX |
-212 |
63 |
GTCACGAACAGGGCAAACTGTGCGAAAGCTCAGGACGCAAAGCTTCCGGCCTACGTATTTATATAAGGTAGCAGGGTTGCCGAT |
|
Vibrio angustum S14
|
|
VAS14_03998 |
tfoX |
-224 |
74.2 |
TCACGAACTGGCAAATTAATTGAAAGATTAAGACGCAAAACCACCGGCCTAAAAATTATGTTAATAATTCAAGGTAGCGGGGTTACCGAAGG |
|
Photobacterium profundum SS9
|
|
PBPRA2288 |
tagA |
-187 |
80 |
TATGTAAAGGGCAAACTAGTCGAAAGGCTAGGACGCAAAGCTACCGGTTTAAGGGTTATTAAGACCTATGACAGCGGAGCCGCCATAGC |
|
PBPRB0312 |
cbp |
-155 |
59.2 |
CACATTGTTGGCAAACTATCCTAAAGGGTAGGACGCAAAGCTTCCGGTCTGTCGACGTCAGTCTATGATAGCGGGGTTACCGTCTT |
|
PBPRA2110 |
tfoX |
-225 |
72.5 |
ACGAAACAAGGCAAACTATTCGAAAGAATAGGACGCAAAGCTTCCGACCTAAAAGGTATTATTTGTGTCTTAAATAATAAACCTCATGGTAGCGGGGTTGCCGATGG |
Export
|
Regulatory Sites
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[ FASTA format ]
|
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