Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Profile of regulator speF in Rhizobiales

Properties
Regulator family: RF00518
Regulation mode:
Biological process: Ornithine degradation
Effector:
Regulog: speF - Rhizobiales
Member of regulog collections
Transcription factor binding sites
Locus Tag Name Position Score Sequence
Sinorhizobium meliloti 1021
SMc02983 speF -398 322.6 CCTTGCCCAAAGTCGCACGTGCCTGTGGGTGTCCGCCGACCCTCGATTAGGTGAGGTTATCGGTAAGGTACCTGGAACTAACCCCTCCAGTCGCTATTCCGGCCAACCGGGAAATGCGAGGACATCTTGAAGCAACGACGGTGCGGGCCTTTCTGGTGTCTGCCGGCTCTCCAACAGCCGGGGTTACTGAAGAGGCACACCTTCATTGCCGGAAGTGCGGTTGGGTTATTCCCTCCAATCCATGGCAGACAAAGCCGAATCCTAGCCTTTGCGGGCTTTGATTCAAATTCGCGCATCGAGCGCATGCATGGTT
Rhizobium sp. NGR234
NGR_c29260 speF -406 312.9 CCTTGCCCAAAGTCGCACGTGCCTGTGGGTGTCCGCCGACCCTCGATTAGGTGAGGATCTCGGTAAGGTACCTGGAACTAACCCCTCCAGTCGCTATTCCGGCCAACCGGGAAATGCGAGGACATCTTGAAGCAACGACGGTGCGGGCCTTTCTGGTGTCTGCCGGCTCTCCAACAGCCGGGGTTACTGAAGAGGCACACCTTCATTGCCGGAAGTGCGGTTGGGTTATTCCCTCCAATCCATGGCAGACAAAGCCGAGTCTTAGCCTTCGCGGGCTTCGATTCACCGTTACGCGCATCGAGCGCATGCAT
Rhizobium leguminosarum bv. viciae 3841
RL4156 speF -411 277.3 CTCAGCCCAAAGTCGCACGTGCCCATGGGTGTCCGCCGAACCCTCGAATTGGTGAGGAAATCGGTAAGGTACCTGGAATTAACCCCTCCAGTCGCTATTCCGGCCAACCGGAAAATGCGAGGACGCCTGAAGCAACGACGGTGCGGGCCTTTTTGTTCTCTCCCTGCTTTCCATCAGCGGGGGTTACTGAAGAGGCACACCATCATTGCCGGAAGTGCGGTTGGGATTCTCCCTCCAATCCATGGCAGACAAAGCCGAACTTACACCGCATCGCGGCGTTGGTTCACTATCTGCGCATCGAGCGCTTGCTATGGT
Agrobacterium tumefaciens str. C58 (Cereon)
Atu3196 speF -404 292 TGCTGCCCAAAGTCGCACGTGCCCATGTGTGTCCGCCGAGTCCTCGATGTGGTGAGGATTTAGGTAAGGTACCTGGAACTAACCCCTCCAGTCGCTATTCCGGCCAACCGGGAAATGCGAGGACATATGAAGCAACGACGGTGCGGGCCTTTCTGGTTCTCTGCCGGCTTTCCATCAGCCGGGGTACTGAAGAGGCACACCATCATTGCCTGAAGTGCGGTCGGGTCATTCCCTCCAATCGATGGCAGACAAAGCCGAATGATGCTCTGGCAGGGCATCGTTCACATTCGCGCCTTGAGCGTATGCTATCGA
Mesorhizobium sp. BNC1
Meso_2715 speF -426 257 TTGCCCAAAGTCGCACGTGCCTGTGGGTGTCCGCCGGGCCTCGAAATGGCGAGGAAACCGGTACGGTACCTGGACCTAACCGCTCCAGTCGATCTTACGGCCAACCGAAGATCGAGGACATCTTGAAGCAACGACGGTGCGGGCCTTTCTGGTGTCTGCCGGTTGTCCAAAGACCGGGGTTACTGAAGAGGCACACCTTCATTGCCGGCAGTGCGGAGGGACATCCCATCCAAAGCTGAGGCAGACAAAGCGAGCCTTCGCCTTGCGGCGGAAGCTCATCGCAATGCGCAAGACGCGTCAACGGTCCGGT
Mesorhizobium loti MAFF303099
mll2974 speF -437 286.7 GCTTGCCCAAAGTCGCACGTGCCTGTGGGTGTCCGCCGATCCTCGAATGGTGAGGGAAATCGGTAAGGTAACTGGAGCTAACCCCTCCAGTCGGTCTAGCGGCCAACCGCCAGCCCGAGGACACCTTGAAGCAACGACGGTGCGGGCCTTTCTGGTTCTCTGCCGGTTGTCCAAAGACCGGGGTTACTGAAGAGGCACACCTTCATTGCCGGTAGTGCGGAACGGGGTTCTCCCAATCCAAGCCAAGGCAGACAAAGCGGACCGAAGCCGGGCAGGGCCGAGGTTCATCGCCGCGAGACGGCGTTTCATGGTT
Brucella melitensis 16M
BMEII1133 speF -404 327.7 GCTTGCCCAAAGTCGCACGTGCCTGTGGGTGTCCGCCGATCCTCGAATGGTGAGGAATTCGGTACGGTACCTGGACCTAACCGCTCCAGTCGATCTGATGGCCAACCGCCAGATCGAGGACATCTTGAAGCAACGACGGTGCGGGCCTTTCTAGTGTCTTTCGGCTGTCCAAAAGTCGAAATTACTGAAGAGGCACACCTTCATTGCCAGAAGTGCGGATGCGGTTCTCCAATTCCAAGCCAAGGCAGACAAAGCGGAGTAACGCTTAGTTTAGCGTTGTTCCATCGCCGCATAAAGTTTTCGCGTGACA
Bartonella quintana str. Toulouse
BQ10050 speF -431 309.2 GCTTGCCCAAAGTCGCACGTGCCTGTGGGTGTCCGCTGGTTCTCAAATGGTGAGATTAACCGGTACGGTACATGGAATTAACCACTCCAGTCATTCTTACGGCCAACCGAAAGAGTGAGGACATCTTGAAGCAACGACGGTGCGGGCCTTTCTGGTGTCTTCCAGCTGTCAAAATGCTGGGGTAACTATAGAGGCACACCTCATTGCCTTCAGTGCGGAAGTGGTTTTCTCAACTCCAATCAAAAAGGCAGAAAAAGTAGAGCAACGTGGTTTTCACGCTGTTTTTCGCTGCATGCAATGTTGCTTTCTTC
Rhodopseudomonas palustris CGA009
RPA0870 speF -467 209 CCTTGCCCAATTTCGCACGTGCCCGTGGTCGTGTGTCAGTCGGTAGGTATCCGGACAAGAGGCCGGACAGCCGCCAAGGGATGAAGAGCCGAGGGTCTCCAAGCGTTCGCGCAGCGAGGCCAGCATCTCTCTCAAGAGATGCCGTTGAAGGTGGCTTCCTCTCTTGCAACCGTGACTGACAGCCGGAGGCGAACCGGCGCACCTCGTTCTCAACGAGGGACGCGACTTAAAGCAACGACGGAGCGGGCTTTTTTGGTCTCTGCCGGCTTTCCATCAGCCGGCGCGAATACCGAAGAGGCTTGTCCTTCATTGCCAGTGAGCGGGCGGGATCCTTCCCAACCAATCCAAGGCAGCACTGCTCGTCCGAGCTGATCGCTCGTCGCGCCTCCATCGCGCGACGGCGCTGAAGCCGTCGG
Nitrobacter winogradskyi Nb-255
Nwi_0924 speF -485 168.8 TACTGCCCAATTTCGCACGTGCCTGTGGTCGTGTGTCAGTCGGTAGGTATCCGGACAAGAGGCCGGACAGCCGCCAAGGGTGAAGCAGCCGAGGGTCGCTCAGATCGATCGAGACTCAAATCGATTGAAGATGAGAGGCCAGCATCTCTCTCCAGGGATGCCAATGAAGGCGCTTTACTTCTTGCAACCGTGACTGGCAGCCGGAGGCGAACCGGCGCACCCCGCTCTCAACGGGGGACGCGACTTAAAGCAACGACGGATCGGGCTTTTTTGGTCTCTACCGGCCTTCCACCGCCGGCGCGGGCTACTGAAAAGGCTTGTCCTTCATTGCCAGGTGTGCGGGCGGGATTCATCCCAACCAATCCACGGCAGCACAGTTGATCTGAACGCAAGGCGTCGTCGCGTCTCCATCGTGCGACGGCTCCGGAACGTTCAG
Azorhizobium caulinodans ORS 571
AZC_0333 speF -495 144 TCCTGCCCAATTTCGCACGTGCCTGTGGTTGCGTGCCGATCGGCGGAAGTCCGGACAAGAGGCCGGAAAGCCGCCAGCCAGATCGGTAGCCGGAGGGAACCGGCCCACCCTGCTCTCAGCAGGGGACGTGACTTGAAGCAACGACGTAGCGGGCTTTTTTGGTCTCTGCCGGCCCTCCAAAGGTCGGGGTTACTGAAGAGGCACTACATCTTGCCGGCCGTGCGGAGAGGGAATTCCCTTTCCAATCGTGCGCATCATCTTCCCAACGCCTGGCGTTTTTGCCGCGCGAAGGGAGCGGTGCCGCTCGG
Xanthobacter autotrophicus Py2
Xaut_2140 speF -495 111.2 CTTTGCCCAAATTCGCACGTGCCTGTGGTCGCGTGTCGGTCGGTAGGATCTCCGGACAAGAGGCCGGAAAGCTGCCAGGACGACCGATAGCCGGAGGGAACCGGCCCACCCCGCTCCTCATGCGGGGGACGTGACTTGAAGCAACGACGTAAGGGCTTTTTTGGTCTCGGTCACCCCTCCAAAGGGCGACGTTACTGAAGAGGCACTACATCTTGCCGGCCGTGCGGAGCGGGAATCCCTCTCCAATCGTGCGCAGTTGTCTCGCCCGCGCCTGGCTCATTGCCCGGTGGGCGGTTCATCTG
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