Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog speF - Rhizobiales

Properties
Regulator type: RNA regulatory element
Name: speF
RFAM: RF00518
Regulation mode:
Biological process: Ornithine degradation
Effector:
Phylum: Proteobacteria
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Sinorhizobium meliloti 1021 1 1
Rhizobium sp. NGR234 1 1
Rhizobium leguminosarum bv. viciae 3841 1 1
Rhizobium etli CFN 42
Agrobacterium tumefaciens str. C58 (Cereon) 1 1
Mesorhizobium sp. BNC1 1 1
Mesorhizobium loti MAFF303099 1 1
Brucella melitensis 16M 1 1
Bartonella quintana str. Toulouse 1 1
Rhodopseudomonas palustris CGA009 1 1
Bradyrhizobium japonicum USDA 110
Bradyrhizobium sp. BTAi1
Nitrobacter winogradskyi Nb-255 1 1
Azorhizobium caulinodans ORS 571 1 1
Xanthobacter autotrophicus Py2 1 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
speF
*
Sinorhizobium meliloti 1021

Site:
position = -398
score = 322.56
sequence = CCTTGCCCAAAGTCG...

Gene: SMc02983: Ornithine decarboxylase (EC 4.1.1.17) / Arginine decarboxylase (EC 4.1.1.19)
*
Rhizobium sp. NGR234

Site:
position = -406
score = 312.89
sequence = CCTTGCCCAAAGTCG...

Gene: NGR_c29260: Ornithine decarboxylase (EC 4.1.1.17) / Arginine decarboxylase (EC 4.1.1.19)
*
Rhizobium leguminosarum bv. viciae 3841

Site:
position = -411
score = 277.3
sequence = CTCAGCCCAAAGTCG...

Gene: RL4156: Ornithine decarboxylase (EC 4.1.1.17) / Arginine decarboxylase (EC 4.1.1.19)
 
Rhizobium etli CFN 42

Gene: RHE_CH03629: Ornithine decarboxylase (EC 4.1.1.17) / Arginine decarboxylase (EC 4.1.1.19)
*
Agrobacterium tumefaciens str. C58 (Cereon)

Site:
position = -404
score = 292.02
sequence = TGCTGCCCAAAGTCG...

Gene: Atu3196: Ornithine decarboxylase (EC 4.1.1.17) / Arginine decarboxylase (EC 4.1.1.19)
*
Mesorhizobium sp. BNC1

Site:
position = -426
score = 256.96
sequence = TTGCCCAAAGTCGCA...

Gene: Meso_2715: Ornithine decarboxylase (EC 4.1.1.17) / Arginine decarboxylase (EC 4.1.1.19)
*
Mesorhizobium loti MAFF303099

Site:
position = -437
score = 286.67
sequence = GCTTGCCCAAAGTCG...

Gene: mll2974: Ornithine decarboxylase (EC 4.1.1.17) / Arginine decarboxylase (EC 4.1.1.19)
*
Brucella melitensis 16M

Site:
position = -404
score = 327.72
sequence = GCTTGCCCAAAGTCG...

Gene: BMEII1133: Ornithine decarboxylase (EC 4.1.1.17) / Arginine decarboxylase (EC 4.1.1.19)
*
Bartonella quintana str. Toulouse

Site:
position = -431
score = 309.17
sequence = GCTTGCCCAAAGTCG...

Gene: BQ10050: Ornithine decarboxylase (EC 4.1.1.17) / Arginine decarboxylase (EC 4.1.1.19)
*
Rhodopseudomonas palustris CGA009

Site:
position = -467
score = 209.03
sequence = CCTTGCCCAATTTCG...

Gene: RPA0870: Ornithine decarboxylase (EC 4.1.1.17) / Arginine decarboxylase (EC 4.1.1.19)
 
Bradyrhizobium japonicum USDA 110

Gene: blr7759: Ornithine decarboxylase (EC 4.1.1.17) / Arginine decarboxylase (EC 4.1.1.19)
 
Bradyrhizobium sp. BTAi1

Gene: BBta_1349: Ornithine decarboxylase (EC 4.1.1.17) / Arginine decarboxylase (EC 4.1.1.19)
*
Nitrobacter winogradskyi Nb-255

Site:
position = -485
score = 168.8
sequence = TACTGCCCAATTTCG...

Gene: Nwi_0924: Ornithine decarboxylase (EC 4.1.1.17) / Arginine decarboxylase (EC 4.1.1.19)
*
Azorhizobium caulinodans ORS 571

Site:
position = -495
score = 144.02
sequence = TCCTGCCCAATTTCG...

Gene: AZC_0333: Ornithine decarboxylase (EC 4.1.1.17) / Arginine decarboxylase (EC 4.1.1.19)
*
Xanthobacter autotrophicus Py2

Site:
position = -495
score = 111.15
sequence = CTTTGCCCAAATTCG...

Gene: Xaut_2140: Ornithine decarboxylase (EC 4.1.1.17) / Arginine decarboxylase (EC 4.1.1.19)
Ornithine decarboxylase (EC 4.1.1.17) / Arginine decarboxylase (EC 4.1.1.19)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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