Regulog speF - Rhizobiales
| Regulator type: | RNA regulatory element |
| Name: | speF |
| RFAM: | RF00518 |
| Regulation mode: | |
| Biological process: | Ornithine degradation |
| Effector: | |
| Phylum: | Proteobacteria |
Member of regulog collections
- By taxonomy - Rhizobiales
- By RNA motif - speF
- By pathway - Ornithine degradation
| Genome | Genes | Operons |
|---|---|---|
| Sinorhizobium meliloti 1021 | 1 | 1 |
| Rhizobium sp. NGR234 | 1 | 1 |
| Rhizobium leguminosarum bv. viciae 3841 | 1 | 1 |
| Rhizobium etli CFN 42 | ||
| Agrobacterium tumefaciens str. C58 (Cereon) | 1 | 1 |
| Mesorhizobium sp. BNC1 | 1 | 1 |
| Mesorhizobium loti MAFF303099 | 1 | 1 |
| Brucella melitensis 16M | 1 | 1 |
| Bartonella quintana str. Toulouse | 1 | 1 |
| Rhodopseudomonas palustris CGA009 | 1 | 1 |
| Bradyrhizobium japonicum USDA 110 | ||
| Bradyrhizobium sp. BTAi1 | ||
| Nitrobacter winogradskyi Nb-255 | 1 | 1 |
| Azorhizobium caulinodans ORS 571 | 1 | 1 |
| Xanthobacter autotrophicus Py2 | 1 | 1 |
| Genes | Function | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||||||
| speF |
*
Sinorhizobium meliloti 1021 Site: position = -398 score = 322.56 sequence = CCTTGCCCAAAGTCG... Gene: SMc02983: Ornithine decarboxylase (EC 4.1.1.17) / Arginine decarboxylase (EC 4.1.1.19) |
*
Rhizobium sp. NGR234 Site: position = -406 score = 312.89 sequence = CCTTGCCCAAAGTCG... Gene: NGR_c29260: Ornithine decarboxylase (EC 4.1.1.17) / Arginine decarboxylase (EC 4.1.1.19) |
*
Rhizobium leguminosarum bv. viciae 3841 Site: position = -411 score = 277.3 sequence = CTCAGCCCAAAGTCG... Gene: RL4156: Ornithine decarboxylase (EC 4.1.1.17) / Arginine decarboxylase (EC 4.1.1.19) |
Gene: RHE_CH03629: Ornithine decarboxylase (EC 4.1.1.17) / Arginine decarboxylase (EC 4.1.1.19) |
*
Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -404 score = 292.02 sequence = TGCTGCCCAAAGTCG... Gene: Atu3196: Ornithine decarboxylase (EC 4.1.1.17) / Arginine decarboxylase (EC 4.1.1.19) |
*
Mesorhizobium sp. BNC1 Site: position = -426 score = 256.96 sequence = TTGCCCAAAGTCGCA... Gene: Meso_2715: Ornithine decarboxylase (EC 4.1.1.17) / Arginine decarboxylase (EC 4.1.1.19) |
*
Mesorhizobium loti MAFF303099 Site: position = -437 score = 286.67 sequence = GCTTGCCCAAAGTCG... Gene: mll2974: Ornithine decarboxylase (EC 4.1.1.17) / Arginine decarboxylase (EC 4.1.1.19) |
*
Brucella melitensis 16M Site: position = -404 score = 327.72 sequence = GCTTGCCCAAAGTCG... Gene: BMEII1133: Ornithine decarboxylase (EC 4.1.1.17) / Arginine decarboxylase (EC 4.1.1.19) |
*
Bartonella quintana str. Toulouse Site: position = -431 score = 309.17 sequence = GCTTGCCCAAAGTCG... Gene: BQ10050: Ornithine decarboxylase (EC 4.1.1.17) / Arginine decarboxylase (EC 4.1.1.19) |
*
Rhodopseudomonas palustris CGA009 Site: position = -467 score = 209.03 sequence = CCTTGCCCAATTTCG... Gene: RPA0870: Ornithine decarboxylase (EC 4.1.1.17) / Arginine decarboxylase (EC 4.1.1.19) |
Gene: blr7759: Ornithine decarboxylase (EC 4.1.1.17) / Arginine decarboxylase (EC 4.1.1.19) |
Gene: BBta_1349: Ornithine decarboxylase (EC 4.1.1.17) / Arginine decarboxylase (EC 4.1.1.19) |
*
Nitrobacter winogradskyi Nb-255 Site: position = -485 score = 168.8 sequence = TACTGCCCAATTTCG... Gene: Nwi_0924: Ornithine decarboxylase (EC 4.1.1.17) / Arginine decarboxylase (EC 4.1.1.19) |
*
Azorhizobium caulinodans ORS 571 Site: position = -495 score = 144.02 sequence = TCCTGCCCAATTTCG... Gene: AZC_0333: Ornithine decarboxylase (EC 4.1.1.17) / Arginine decarboxylase (EC 4.1.1.19) |
*
Xanthobacter autotrophicus Py2 Site: position = -495 score = 111.15 sequence = CTTTGCCCAAATTCG... Gene: Xaut_2140: Ornithine decarboxylase (EC 4.1.1.17) / Arginine decarboxylase (EC 4.1.1.19) |
Ornithine decarboxylase (EC 4.1.1.17) / Arginine decarboxylase (EC 4.1.1.19) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |