Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Profile of regulator yybP-ykoY in Shewanellaceae

Properties
Regulator family: RF00080
Regulation mode:
Biological process:
Effector:
Regulog: yybP-ykoY - Shewanellaceae
Member of regulog collections
Transcription factor binding sites
Locus Tag Name Position Score Sequence
Shewanella oneidensis MR-1
SO_1071 COG2119 -158 45.4 CCATCTCGCTTCGGGGGAGTAGCTAACTGGATTTCGAGCCATCGATCTCTAGGGTGAACGTCAACATACTTGGCCGCATGCCATGGTGTTCACAGCAAATCATCGATTTGTCTTGCAAGACCTGAGCACAATAA
Shewanella putrefaciens CN-32
Sputcn32_0914 COG2119 -195 47.9 ACGCCTCGCTTCGGGGGAGTAGCTAACTGGATTTCGAGCCATCGTTATCTAGGGTGAATATCAACATACTTGGCAACAGGCCATGGTATTCACAGCAAGTCATTGATTTGCCAAGCAAGACCTGAGCACAATAA
Shewanella sp W3-18-1
Sputw3181_3259 COG2119 -193 47.9 GCCTCGCTTCGGGGGAGTAGCTAACTGGATTTCGAGCCATCGTTATCTAGGGTGAATATCAACATACTTGGCAACAGGCCATGGTATTCACAGCAAGTCATTGATTTGCCAAGCAAGACCTGAGCACAATAACC
Shewanella sp ANA-3
Shewana3_0909 COG2119 -158 44.4 CCTCCTCGCTTCGGGGGAGTAGCTAACTGGATTTCGAGCCGTCGATATTCAGGGTGAACATCAACATACTTGGCCGCATGCCATGGTGTTCACAGCAAATCATCGATTTGTCCTGCAAGACCTGAGCACAGTAA
Shewanella sp MR-4
Shewmr4_3028 COG2119 -156 45.1 ACCTCGCTTCGGGGGAGTAGCTAACTGGATTTCGAGCCATCGATATTCAGGGTGAACATCAACATACTTGGCCGCATGCCATGGTGTTCACAGCAAATCATCGATTTGTCCTGCAAGACCTGAGCACAGTAACC
Shewanella sp MR-7
Shewmr7_0946 COG2119 -158 45.1 CCACCTCGCTTCGGGGGAGTAGCTAACTGGATTTCGAGCCATCGATATTCAGGGTGAACATCAACATACTTGGCCGCATGCCATGGTGTTCACAGCAAATCATCGATTTGTCCTGCAAGACCTGAGCACAGTAA
Shewanella baltica OS155
Sbal_0895 COG2119 -195 50.4 CCACCTCGCTTCGGGGGAGTAGCTAACTGGATTTCGAGCCATCGTCATCTAGGGTGAACATCAACATACTTGGCCACACGCCATGGTGTTCACAGCAAATCATCGATTTGCCCAGCAAGACCTGAGCACAATGA
Shewanella denitrificans OS217
Sden_0682 COG2119 -226 45.6 CGCCTCGTATTTAGGGGAGTAGCTAACCAAGGCCAGATTTTCAATTGCCTTGGGGTGAGTATCAACATACTTGGCCACAGGCCATGGTGCTCACAGTGGTTTCTGAGTTAATGCTTAATTAATAAGACTCAGCGGAAAACCACCCAGCAAGACCTAAGCACGGCGA
Shewanella frigidimarina NCIMB 400
Sfri_0575 COG2119 -205 52.8 GACTTGTTTTAGGGGAGTAGCTAATCTTGTTTTGCTGTTATGGCACACAAGATGTCTGTATCAACATAATTGGCCTCATGCCATGGTGCAGACAGTAACACACTGTATATCAGTGATTTACCAAGCGAGACCTAAGCACAGTAACT
Shewanella amazonensis SB2B
Sama_0510 ykoY -181 62.7 TAAGCACCAACAAGGGGAGTAACTTCTCGCTGGTTTGTCGTCATGACGGTGATTTGCACCCGGCAACCAGGCAGCCATGGGGGGCTGTAAGTGAGACCTTGCCGACGGGC
Sama_2940 COG2119 -190 55.5 CCTCACTTTCGGGGGAGTAGCCAACCTGAGTCCGGCTCAGGGGTAAGCATCAACACACTTGGCCACATGCCATGGTGCTTACAGCAAACATGAGTTTGCCCGGCAAGACCTGAGCGCGATAAGC
Shewanella loihica PV-4
Shew_3189 COG2119 -192 53.2 CCACTGCTTCAGGGGAGTAGCTAACAAGGCAAAGCCATTTGCCTTGAGTGAGTGTCAACATACTTGGCCACATGCCATGGTACTCACGGTAAGGGGAACACCTCTTACTCTGCAAGACCTGAGCACGGTTACC
Shewanella pealeana ATCC 700345
Spea_0640 COG2119 -230 42.2 CGCATCCGCTTCAGGGGAGTAGCTATCGGTAGACAGATTCAAGAATACTCTTGAGTACTTAAACTTTCTACTGAGTATGTATCAACATAATTGGCCTCATGCCATGGTACATACAGCAACTTGACACAACAGCTGTTGAGTTCGCCCAGCAAGACCTGAGCACCGCAC
Spea_1566 ykoY -192 49.3 ATGCCTGCGTTTTGGGGAGTAGTCATTCTGTCGCGCAGTCGTCATTCCGTTGCTTTAGCTTCCGGCCCGCGAGAACACGTTAAATAATGTGTTTTGACAAGACCAACAACGCGTAT
Shewanella halifaxensis HAW-EB4
Shal_0730 COG2119 -228 43.8 CGCCTCCGCTTCAGGGGAGTAGCTATCGGTAGAGTGACTCAAGGATTACTTAAGTCTTCTACTGAGTATGTATCAACATAATTGGCCTAATGCCATGGTGCATACAGCAGCTTGATGTGCAGCAGCACATCGAGTTTGCCCAGCAAGACCTGAGCACCGCAC
Shal_1633 ykoY -192 46.5 ATGTCTGCGTTTTGGGGAGTAGTCACTCTGTCGCGCCGTCGTCATTCCGTTGCTTTTGCTTCCGGCCCGCGAGAACACATTAAATAATCTGTTTTGACAAGACCAACAACACGTAT
Shewanella piezotolerans WP3
swp_4428 COG2119 -168 52.3 GCTCTGCTTCAGGGGAGTAGCTATCAATCAATGTATTCGCTTTACATTGGTTGAGTAAGTATCAACATAATTGGCCATATGCCATGGTACTTACAGTCGATGTCATTTTTATTGCCATAGACCCAGCAAGACCTGAGCACAATACCA
Shewanella sediminis HAW-EB3
Ssed_3939 COG2119 -181 49.8 TCACTACTTCAGGGGAGTAGCTAACTATTTAACCTGATTCAATAGCAGGTTAAACAGAGTGAACATCAACATACTTGGCCAGATCGCCATGGTGTTCACGGCAACAGGACTCGATGAGTCATATTGCCAGGCAAGACCTGAGTGCAGTTACC
Shewanella woodyi ATCC 51908
Swoo_3880 COG2119 -228 62.5 CCACTACTTCAGGGGAGTAGCCACCAAAGATTTTCTACCATTAGAGAATAGTTGGGTGAACATCAACATACTTGGCCACATCGCCATGGTGTTCACGACAATCACACTTAAGCTGAGATTGTTAGGCAAGACCTGAGTGCAGTTACC
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