Regulog yybP-ykoY - Shewanellaceae
| Regulator type: | RNA regulatory element |
| Name: | yybP-ykoY |
| RFAM: | RF00080 |
| Regulation mode: | |
| Biological process: | |
| Effector: | |
| Phylum: | Proteobacteria |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By RNA motif - yybP-ykoY
| Genome | Genes | Operons |
|---|---|---|
| Shewanella oneidensis MR-1 | 1 | 1 |
| Shewanella putrefaciens CN-32 | 1 | 1 |
| Shewanella sp W3-18-1 | 1 | 1 |
| Shewanella sp ANA-3 | 1 | 1 |
| Shewanella sp MR-4 | 1 | 1 |
| Shewanella sp MR-7 | 1 | 1 |
| Shewanella baltica OS155 | 1 | 1 |
| Shewanella denitrificans OS217 | 1 | 1 |
| Shewanella frigidimarina NCIMB 400 | 1 | 1 |
| Shewanella amazonensis SB2B | 2 | 2 |
| Shewanella loihica PV-4 | 1 | 1 |
| Shewanella pealeana ATCC 700345 | 2 | 2 |
| Shewanella halifaxensis HAW-EB4 | 2 | 2 |
| Shewanella piezotolerans WP3 | 1 | 1 |
| Shewanella sediminis HAW-EB3 | 1 | 1 |
| Shewanella woodyi ATCC 51908 | 1 | 1 |
| Genes | Function | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||||||
| COG2119 |
*
Shewanella oneidensis MR-1 Site: position = -158 score = 45.37 sequence = CCATCTCGCTTCGGG... Gene: SO_1071: Predicted memrane protein, COG2119 |
*
Shewanella putrefaciens CN-32 Site: position = -195 score = 47.94 sequence = ACGCCTCGCTTCGGG... Gene: Sputcn32_0914: Predicted memrane protein, COG2119 |
*
Shewanella sp W3-18-1 Site: position = -193 score = 47.94 sequence = GCCTCGCTTCGGGGG... Gene: Sputw3181_3259: Predicted memrane protein, COG2119 |
*
Shewanella sp ANA-3 Site: position = -158 score = 44.36 sequence = CCTCCTCGCTTCGGG... Gene: Shewana3_0909: Predicted memrane protein, COG2119 |
*
Shewanella sp MR-4 Site: position = -156 score = 45.14 sequence = ACCTCGCTTCGGGGG... Gene: Shewmr4_3028: Predicted memrane protein, COG2119 |
*
Shewanella sp MR-7 Site: position = -158 score = 45.14 sequence = CCACCTCGCTTCGGG... Gene: Shewmr7_0946: Predicted memrane protein, COG2119 |
*
Shewanella baltica OS155 Site: position = -195 score = 50.38 sequence = CCACCTCGCTTCGGG... Gene: Sbal_0895: Predicted memrane protein, COG2119 |
*
Shewanella denitrificans OS217 Site: position = -226 score = 45.59 sequence = CGCCTCGTATTTAGG... Gene: Sden_0682: Predicted memrane protein, COG2119 |
*
Shewanella frigidimarina NCIMB 400 Site: position = -205 score = 52.79 sequence = GACTTGTTTTAGGGG... Gene: Sfri_0575: Predicted memrane protein, COG2119 |
*
Shewanella amazonensis SB2B Site: position = -190 score = 55.48 sequence = CCTCACTTTCGGGGG... Gene: Sama_2940: Predicted memrane protein, COG2119 |
*
Shewanella loihica PV-4 Site: position = -192 score = 53.17 sequence = CCACTGCTTCAGGGG... Gene: Shew_3189: Predicted memrane protein, COG2119 |
*
Shewanella pealeana ATCC 700345 Site: position = -230 score = 42.25 sequence = CGCATCCGCTTCAGG... Gene: Spea_0640: Predicted memrane protein, COG2119 |
*
Shewanella halifaxensis HAW-EB4 Site: position = -228 score = 43.76 sequence = CGCCTCCGCTTCAGG... Gene: Shal_0730: Predicted memrane protein, COG2119 |
*
Shewanella piezotolerans WP3 Site: position = -168 score = 52.32 sequence = GCTCTGCTTCAGGGG... Gene: swp_4428: Predicted memrane protein, COG2119 |
*
Shewanella sediminis HAW-EB3 Site: position = -181 score = 49.8 sequence = TCACTACTTCAGGGG... Gene: Ssed_3939: Predicted memrane protein, COG2119 |
*
Shewanella woodyi ATCC 51908 Site: position = -228 score = 62.52 sequence = CCACTACTTCAGGGG... Gene: Swoo_3880: Predicted memrane protein, COG2119 |
Predicted memrane protein, COG2119 |
| CRON 2. | |||||||||||||||||
| ykoY |
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*
Shewanella amazonensis SB2B Site: position = -181 score = 62.68 sequence = TAAGCACCAACAAGG... Gene: Sama_0510: Membrane protein TerC, possibly involved in tellurium resistance |
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*
Shewanella pealeana ATCC 700345 Site: position = -192 score = 49.3 sequence = ATGCCTGCGTTTTGG... Gene: Spea_1566: Membrane protein TerC, possibly involved in tellurium resistance |
*
Shewanella halifaxensis HAW-EB4 Site: position = -192 score = 46.49 sequence = ATGTCTGCGTTTTGG... Gene: Shal_1633: Membrane protein TerC, possibly involved in tellurium resistance |
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Membrane protein TerC, possibly involved in tellurium resistance |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |