Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog yybP-ykoY - Shewanellaceae

Properties
Regulator type: RNA regulatory element
Name: yybP-ykoY
RFAM: RF00080
Regulation mode:
Biological process:
Effector:
Phylum: Proteobacteria
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Shewanella oneidensis MR-1 1 1
Shewanella putrefaciens CN-32 1 1
Shewanella sp W3-18-1 1 1
Shewanella sp ANA-3 1 1
Shewanella sp MR-4 1 1
Shewanella sp MR-7 1 1
Shewanella baltica OS155 1 1
Shewanella denitrificans OS217 1 1
Shewanella frigidimarina NCIMB 400 1 1
Shewanella amazonensis SB2B 2 2
Shewanella loihica PV-4 1 1
Shewanella pealeana ATCC 700345 2 2
Shewanella halifaxensis HAW-EB4 2 2
Shewanella piezotolerans WP3 1 1
Shewanella sediminis HAW-EB3 1 1
Shewanella woodyi ATCC 51908 1 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
COG2119
*
Shewanella oneidensis MR-1

Site:
position = -158
score = 45.37
sequence = CCATCTCGCTTCGGG...

Gene: SO_1071: Predicted memrane protein, COG2119
*
Shewanella putrefaciens CN-32

Site:
position = -195
score = 47.94
sequence = ACGCCTCGCTTCGGG...

Gene: Sputcn32_0914: Predicted memrane protein, COG2119
*
Shewanella sp W3-18-1

Site:
position = -193
score = 47.94
sequence = GCCTCGCTTCGGGGG...

Gene: Sputw3181_3259: Predicted memrane protein, COG2119
*
Shewanella sp ANA-3

Site:
position = -158
score = 44.36
sequence = CCTCCTCGCTTCGGG...

Gene: Shewana3_0909: Predicted memrane protein, COG2119
*
Shewanella sp MR-4

Site:
position = -156
score = 45.14
sequence = ACCTCGCTTCGGGGG...

Gene: Shewmr4_3028: Predicted memrane protein, COG2119
*
Shewanella sp MR-7

Site:
position = -158
score = 45.14
sequence = CCACCTCGCTTCGGG...

Gene: Shewmr7_0946: Predicted memrane protein, COG2119
*
Shewanella baltica OS155

Site:
position = -195
score = 50.38
sequence = CCACCTCGCTTCGGG...

Gene: Sbal_0895: Predicted memrane protein, COG2119
*
Shewanella denitrificans OS217

Site:
position = -226
score = 45.59
sequence = CGCCTCGTATTTAGG...

Gene: Sden_0682: Predicted memrane protein, COG2119
*
Shewanella frigidimarina NCIMB 400

Site:
position = -205
score = 52.79
sequence = GACTTGTTTTAGGGG...

Gene: Sfri_0575: Predicted memrane protein, COG2119
*
Shewanella amazonensis SB2B

Site:
position = -190
score = 55.48
sequence = CCTCACTTTCGGGGG...

Gene: Sama_2940: Predicted memrane protein, COG2119
*
Shewanella loihica PV-4

Site:
position = -192
score = 53.17
sequence = CCACTGCTTCAGGGG...

Gene: Shew_3189: Predicted memrane protein, COG2119
*
Shewanella pealeana ATCC 700345

Site:
position = -230
score = 42.25
sequence = CGCATCCGCTTCAGG...

Gene: Spea_0640: Predicted memrane protein, COG2119
*
Shewanella halifaxensis HAW-EB4

Site:
position = -228
score = 43.76
sequence = CGCCTCCGCTTCAGG...

Gene: Shal_0730: Predicted memrane protein, COG2119
*
Shewanella piezotolerans WP3

Site:
position = -168
score = 52.32
sequence = GCTCTGCTTCAGGGG...

Gene: swp_4428: Predicted memrane protein, COG2119
*
Shewanella sediminis HAW-EB3

Site:
position = -181
score = 49.8
sequence = TCACTACTTCAGGGG...

Gene: Ssed_3939: Predicted memrane protein, COG2119
*
Shewanella woodyi ATCC 51908

Site:
position = -228
score = 62.52
sequence = CCACTACTTCAGGGG...

Gene: Swoo_3880: Predicted memrane protein, COG2119
Predicted memrane protein, COG2119
 
CRON 2.
ykoY
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3
 
Shewanella sp MR-4
 
Shewanella sp MR-7
 
Shewanella baltica OS155
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400
*
Shewanella amazonensis SB2B

Site:
position = -181
score = 62.68
sequence = TAAGCACCAACAAGG...

Gene: Sama_0510: Membrane protein TerC, possibly involved in tellurium resistance
 
Shewanella loihica PV-4
*
Shewanella pealeana ATCC 700345

Site:
position = -192
score = 49.3
sequence = ATGCCTGCGTTTTGG...

Gene: Spea_1566: Membrane protein TerC, possibly involved in tellurium resistance
*
Shewanella halifaxensis HAW-EB4

Site:
position = -192
score = 46.49
sequence = ATGTCTGCGTTTTGG...

Gene: Shal_1633: Membrane protein TerC, possibly involved in tellurium resistance
 
Shewanella piezotolerans WP3
 
Shewanella sediminis HAW-EB3
 
Shewanella woodyi ATCC 51908
Membrane protein TerC, possibly involved in tellurium resistance
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD