Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Profile of regulator Lysine in Shewanellaceae

Properties
Regulator family: RF00168
Regulation mode:
Biological process: Lysine biosynthesis
Effector: Lysine
Regulog: Lysine - Shewanellaceae
Member of regulog collections
Transcription factor binding sites
Locus Tag Name Position Score Sequence
Shewanella oneidensis MR-1
SO_1007 lysW -257 124.3 CTTTAAGTAGAGGCGCGCTGCCTATGACTACTTGTGCGGAGGGTGATGCCGCAGATGTACAAGGAAAGGAGTCAGCGCCGAAGTAGCCAGGTCATCAAACCGAGCTGCTGGTTTTGCATCAAATAGGTGCAAGACTGCCATAGTCATCCACTATGGAGCGCTACCTGAAGGGG
SO_3142.3 lysW -277 108.9 TCTTAGAAGTAGAGACGCACCAAATATCAGTAGTGATCAGTAGGGTGATTCCATTGATCGATCACGAAAGGATTTGGTACCGAAGTGGTTTGATTTATCACGATCAACTGCTGGGGTTGTGCTGAATAGGTACAATACTGCCGTAGTATTTCCTGATATGGATATTCGGAATCGTTACTATGGAGTGCTACTGATAGG
SO_3986 lysC -319 84.2 AAGGAACAGAAGAGGAGCGTTAACTAGGTAGTCAATCAGAGGAGCACAAACTCCAGCGATGATTGATGAGGGAGATTAGCGCCGAGGCATAGATGTGGTTGCTGCATGTTTATGTCGGTCGCTTAGGCTGAATCCTAACGATTGTCACCTGTAATTGGTGGAGAGCTTCTGGTGAC
Shewanella putrefaciens CN-32
Sputcn32_2509 lysW -278 124.4 TCTTAGAAGTAGAGGCGCGCCAAATATCAGTAGTGATCAGTAGGGTGATTCCGATGATCGATTACGAAAGGATTTGGTGCCGAAGTGGTTTGATTTATCACAATCAACTGCTGGGGTTGTACCGAATAGGTGCAGCACTGCCATAGTATTTTCTAATACGGATATTGGAAATAGTTACTATGGAGCGCTACTGATAGG
Sputcn32_0680 lysC -324 85.2 GGAACAGAAGAGGAGCGTTAACTAGGTAGTCGGTCTGAGGAGCACAAACTCCAACGATGACAGATGAGGGAGATTAACGCCGAGGCATAGATATGGTTGCTGCGTGTTTATGTCGGTCGTTCAGGCTGAATCCTGACGATTGTCACCTGTAATTGGTGGAGAGCTTCTGGTGACGA
Shewanella sp W3-18-1
Sputw3181_1499 lysW -276 124.4 TTAGAAGTAGAGGCGCGCCAAATATCAGTAGTGATCAGTAGGGTGATTCCGATGATCGATTACGAAAGGATTTGGTGCCGAAGTGGTTTGATTTATCACAATCAACTGCTGGGGTTGTACCGAATAGGTGCAGCACTGCCATAGTATTTTCTAATACGGATATTGGAAATAGTTACTATGGAGCGCTACTGATAGGAC
Sputw3181_3491 lysC -323 85.2 AAGGAACAGAAGAGGAGCGTTAACTAGGTAGTCGGTCTGAGGAGCACAAACTCCAACGATGACAGATGAGGGAGATTAACGCCGAGGCATAGATATGGTTGCTGCGTGTTTATGTCGGTCGTTCAGGCTGAATCCTGACGATTGTCACCTGTAATTGGTGGAGAGCTTCTGGTGAC
Shewanella sp ANA-3
Shewana3_1407 lysW -275 124.8 TTAGAAGTAGAGGCGCACCAAATATCAGTAGTGATCAGTAGGGTGATTCCGTTGATCGTTCACGAAAGGATTTGGTGCCGAAGTGGTTTGATTTATCACGATCAACTGCTGGGGTTGTGCCGAATAGGTACAACACTGCCATAGTATTTTCTGATACGGATATTAGGAATAGTTACTATGGAGCGCTACTGATAGGAC
Shewana3_0652 lysC -317 85.2 GGAACAGAAGAGGAGCGTTAACTAGGTAGTCAGTCAGAGGAGCACAAACTCCAGCGATGATTGATGAGGGAGATTAACGCCGAGGCATAGATGTGGTTGCTGCATGTTTATGTCGGTCGCTTAGGCTGAATCCTAACGATTGTCACCTGTAATTGGTGGAGAGCTTCTGGTGACGA
Shewanella sp MR-4
Shewmr4_1354 lysW -275 124.8 TTAGAAGTAGAGGCGCACCAAATATCAGTAGTGATCAGTAGGGTGATTCCGTTGATCGTTCACGAAAGGATTTGGTGCCGAAGTGGTTTGATTTATCACGATCAACTGCTGGGGTTGTGCCGAATAGGTACAACACTGCCATAGTATTTTCTGATACGGATATTAGGAATAGTTACTATGGAGCGCTACTGATAGGAC
Shewmr4_0653 lysC -317 85.2 GGAACAGAAGAGGAGCGTTAACTAGGTAGTCAGTCAGAGGAGCACAAACTCCAGCGATGATTGATGAGGGAGATTAACGCCGAGGCATAGATGTGGTTGCTGCATGTTTATGTCGGTCGCTTAGGCTGAATCCTAACGATTGTCACCTGTAATTGGTGGAGAGCTTCTGGTGACGA
Shewanella sp MR-7
Shewmr7_1419 lysW -275 124.8 TTAGAAGTAGAGGCGCACCAAATATCAGTAGTGATCAGTAGGGTGATTCCGTTGATCGTTCACGAAAGGATTTGGTGCCGAAGTGGTTTGATTTATCACGATCAACTGCTGGGGTTGTGCCGAATAGGTACAACACTGCCATAGTATTTTCTGATACGGATATTAGGAATAGTTACTATGGAGCGCTACTGATAGGAC
Shewmr7_3369 lysC -319 85.2 AAGGAACAGAAGAGGAGCGTTAACTAGGTAGTCAGTCAGAGGAGCACAAACTCCAGCGATGATTGATGAGGGAGATTAACGCCGAGGCATAGATGTGGTTGCTGCATGTTTATGTCGGTCGCTTAGGCTGAATCCTAACGATTGTCACCTGTAATTGGTGGAGAGCTTCTGGTGAC
Shewanella baltica OS155
Sbal_2845 lysW -277 117.6 TCTTAGAAGTAGAGGCGCGCCAAATATTAGTAGTGATCAGTAGGGTGATTCCGTTGATCGATTGCGAAAGGATTTGGTGCCGAAGTGGTTCGATTTATCACGATCAACTGCTGGGGTTGTACCTAATAGGTGCAACACTGCCATAGTATTTTCCGATACGGATATTGGAAATAGTTACTATGGAGCGCTACTGATAGG
Sbal_0788 lysC -324 88.8 GGAACAGAAGAGGAGCGTTAACTAGGTAGTCGGTCAGAGGAGCACAAACTCCAGCGATGACTGATGAGGGAGATTAACGCCGAGGCATAGATATGGTTGCTGCATGTTTATGTCGGTCGCTCAGGCTGAATCCTGACGATTGTCACCTGTAATTGGTGGAGAGCTTCTGGTGACGA
Shewanella denitrificans OS217
Sden_2537 lysW -262 97.9 CCTTTATGGTAGAGGTGCGCTAATTATAAGTAGTGATCAGTAGGGTGATGCCTAAGATCGTTCACGAAAGGAGTTAGTGCCGAAGTTGAGCTATCCATCATGATCTACTGCTGGTGTTGCTGTTGAAAAAGCGCAACACTGCCATGGTGTTTTTTATCGGGAAGATAGAAGATTTTAACCGTGGAGCGCTACTGATAGG
Sden_2982 lysC -349 84.1 GAGGCACAGAAGAGGCGCGTTAACTAGGTAATAAGTCGGAGAATACCCCATTCTTTGATGGCTTATGAGGGAGTTTAACGCCGAGGCAACATACGTGGTGGTATTGTTGTCGGTCGGTTAGGCTGAATCCTAACGATTGTCACCTTTTTATGGTGGAGAGCTTCTGGTGAC
Shewanella frigidimarina NCIMB 400
Sfri_2746 lysW -301 105.9 CAACAAAAGTAGAGGTGCGTTGCATAAAAGTCATGTTGAATTGGGTGATGCCAATAATTCGACATAAAAGGATGCAATGCCGAAATAAATGGGGTTATCAGCTTCATTTGTTGGGGCAGTTCTCGAAAGGGACTGCACTGTCATAGTGTTTTTATCAACTTGATAAAAAGAATGATATTCATATTAAATGGATATTGCTGTGGAGTGCTACTAGTTAA
Sfri_0535 lysC -308 85.4 GGAACAGAAGAGGAGCGTTAACTAGGTAGTAAGTGAGAGGATGCCAATCCGATGACCACTTATGATGGAGATTAGCGCCGAGGTATCAGTTTGTTTGGCAAACATTGATATCGGTCGATTAGGCTGAATCCTAACGATTGTCACCTATTTTTTTGGTGGAGAGCTTCTGGTGATGA
Shewanella amazonensis SB2B
Sama_1171 lysW -275 106 TCCTGAGTAGAGGTGCGCCAAGCATCAGTAACAGTCAATAGGGTGATGCCGTTGACGGGCTGTGAAAGGGTATTGGCGCCGAAGTGGATGTGTGTATCACCGCCTTCCGCTGGGGTCGTTTTCGAAAGAAACGGCACTGCCATAGTATTTTCTGTCGGGATGACAGATGTTGTATTTACTATGGAGCGCTACTGATAGGAC
Sama_0603 lysC -313 81.7 GGCACAGAAGAGGAGCGCCAACTAGGTAGCAGGCTTGAGGAGCAATCACTCCAAAGACGACCTGTGAGGGAGATTGGCGCCGAGGCAAAACCACGTGCTTGAGTGCGTTTTGTCGGTCGTTCAGGCTGAATCCTGACGATTGTCACCTGTTATTTGGTGGAGAGCTTCTGGTGACGA
Shewanella loihica PV-4
Shew_2582 lysW -296 103.3 CCTGAGACGTAGAGGTGCATTAAATATCAGTAGTATTCGTTAGGGTGATGCCGTTAAGCGAATATGAAAGGATTTGGTGCCGAAGTGGTGGAGTTGATCAAGGCTTGCCGCTGGGGCTGTCATCGAATAGAGGCAGCACTGCCATAGTGCTTCTTATCTGGATTGATAAGTGGAAGGTATACCGAGAATGGGTATCACTATGGAGCGCTACTGATAGG
Shew_0779 lysC -305 95.2 GATACAGAAGAGGAGCGTTAACTAGGTAGTAAGCCCGAGGAGTCCAAACTCCGTTGACGGTTTATGAGGGAGATTAACGCCGAGGTAAAGAGATGTTTGGTTTCATCTATTTATCGGTCGACTGGGCTGAATCCCATCGATTGTCACCTGTTTTTTGGTGGAGAGCTTCTGGTGGCAA
Shewanella pealeana ATCC 700345
Spea_3259 lysW -257 127.2 TCCTTTGAGTAGAGGCGCGCTGCCTAAAAGTATCCAGATAGAGGGTGACACCTAAGACATCTGGGGAAAGGAGTCAGCGCCGAAGTTATTGTTGCGTCATCAACAATCGCTGGGTCTGCATTTAACAGATGCAGGACTGCCATAGTTATGTTGTCTATGGAGCGCTACCTAAAGG
Spea_2853 lysW -301 104.4 CCTGAGAAGTAGAGGTGCATTAAATATCAGTATCGATAAGTAGGGTGATGCCGCTGATCTATCGAGAAAGGATTTGATGCCGAAGTGACATAGCATATCGGGGCTAGTTGCTGGGGCTGTGACCAAATAGGGACAGCACTGCCATAGTATTTCTTATCTGGAAGATAAGAATTTTTATATTAATGACGAACCATTAATATGGCTATGGAGCGCTACTGATAGG
Spea_0735 lysC -327 77.8 AGTGCAGAAGAGGAGCGTTAACTAGGTAGTAAGTTTGAGGGGACCAAAACCCTTTGATGACTTATGAGGGAGATTAACGCCGAGATATTTAAAGCCATTTGGACGGGCTTGAATGTTGGTTGTACAGGCTGAATCCTGTCGATTGTCACCTATGTTTATTATGGTGGAGAGCTTCTGGTGACGA
Shewanella halifaxensis HAW-EB4
Shal_3334 lysW -256 126.2 TCCTTTGAGTAGAGGCGCGCTGCCTAAAAGTATCCAGATAGAGGGTGACACCTAAGACATCTGGGGAAAGGAGACAGCGCCGAAGTTATTGTTGCGTCATCAACAATCGCTGGGTCTGCATTTAACAGATGCAGGACTGCCATAGTTATGTTGTCTATGGAGCGCTATTAGAGGG
Shal_2943 lysW -302 106.1 CCTGAGAAGTAGAGGTGCATTAAATATGAGTATCGATAAGTAGGGTGATGCCGCTGAGCTATCGAGAAAGGATTTAATGCCGAAGTGACATAGCATATCGGGGCTAGTTGCTGGGGCTGTGACCAAATAGGGACAGCACTGCCATAGTATTTCTTATCTGGAAGATAAGAATTTTTATATTAATGACGAACCATTAATATGGCTATGGAGCGCTACTGATAGG
Shal_0788 lysC -326 80.2 ACTACAGAAGAGGAGCGCTAACTAGGTAGTAAGTTGGAGGGGGCCAAACCCCAATGATGGCTTATGAGGGAGATTAGCGCCGAGATATTCATAGCCATTTGGTCGGGCTTGAATGTTGGTTGTTCAGGCTGAATCCTGTCGATTGTCACCAATGTTTTTTATGGTGGAGAGCTTCTGGTTGCGA
Shewanella piezotolerans WP3
swp_3470 lysW -302 101 CCTTAGAAGTAGAGGTGCATTTAATATTAGTACCAACGAGTAGGGTGATGCCTATGACTTGTTGAGAAAGGATTTGATGCCGAAGTGACATAGCATATCGAGGCGTGTTGCTGGGGCTGTTATCAAATAGGAACAGCACTGCCATAGTATTTCTTATCGGGAAGATAAGAAGATTTTATATTAATGTCGAACATTGATATTACTGTGGAGCGCTACTGATAGG
swp_4345 lysC -316 81.6 TGAGTACAGAAGAGGAGCGTTAACTAGGTAGTGAATGAGAGGGGACCAAAACCCAAAGATCATTCATGAGGGAGATTAGCGCCGAGATATTAAAAGCTTTTTGGGATAGCTTTAAGTATCGGTCGTTCAGGCTGAATCCTGTCGATTGTCACCTATTATTATGGTGGAGAGCTTCTGGTGAC
Shewanella sediminis HAW-EB3
Ssed_1447 lysW -300 109.8 TGAGAAGTAGAGGTGCATTAAATATCAGTAGTGATAGCCAGGGTGATTCCGTTTATCTATCATGAAAGGATTTGATGCCGAAGTAGTAAAACATATCAAGGTTTACTGCTGGGGCTGACATCGAATAGGTGCGGCACTGCCATAGTATTTCTTATCCGGAAGATAAGAAGATTTTATACCTTTTAACATAGGGTATTGCTATGGAGCGCTACTGATAGGAC
Ssed_0817 lysC -309 79.5 GGTACAGAAGAGGAGCGTTAACTAGGTAGTAAGTTTGAAGAGGCCAAACTCTGATGACGACTTATGAGGGAGATTAGCGCCGAGATATTGATATATTTTGACGTATACAATATCGGTCATTTGGGCTGAATCCCATCGATTGTCACCTGTTTATTGGTGGAGAGCTTCTGGTGATGA
Shewanella woodyi ATCC 51908
Swoo_3234 lysW -327 108.9 CCTGAGAAGTAGAGGTGCATTAAATATTAGTAGTGATAATCAGGGTGATTCCGCTTATCTATCATGAAAGGATTTAATGCCGAAGTAGTAATACATATCACGGTTTACTGCTGGGGCTGCAATCGAATAGGTGCAGCACTGCCATAGTATTTCTTATCCGGAAGATAAGAAGATTTTATACCTTTTAATTACTGGTATTACTATGGAGCGCTACTGATAGG
Swoo_3764 lysC -309 79 GGTACAGAAGAGGTGCGTTAACTAGGTAGTAAGTCTGAGAAGTCCAAACTTTGATGATGGCTTATGAGGGAGATTAACGCCGAGGTGTTGCAGTGTTTGGAATCACTCAATATCGGTCGAATGGGCTGAATCCCATAGATTGTCACCTTTTATTGGTGGAGAGCTTCTGGTGGTGA
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