Regulog Lysine - Shewanellaceae
| Regulator type: | RNA regulatory element |
| Name: | Lysine |
| RFAM: | RF00168 |
| Regulation mode: | |
| Biological process: | Lysine biosynthesis |
| Effector: | Lysine |
| Phylum: | Proteobacteria |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By RNA motif - Lysine
- By effector - Lysine
- By pathway - Lysine biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Shewanella oneidensis MR-1 | 5 | 3 |
| Shewanella putrefaciens CN-32 | 2 | 2 |
| Shewanella sp W3-18-1 | 2 | 2 |
| Shewanella sp ANA-3 | 3 | 2 |
| Shewanella sp MR-4 | 3 | 2 |
| Shewanella sp MR-7 | 3 | 2 |
| Shewanella baltica OS155 | 3 | 2 |
| Shewanella denitrificans OS217 | 2 | 2 |
| Shewanella frigidimarina NCIMB 400 | 2 | 2 |
| Shewanella amazonensis SB2B | 3 | 2 |
| Shewanella loihica PV-4 | 3 | 2 |
| Shewanella pealeana ATCC 700345 | 4 | 3 |
| Shewanella halifaxensis HAW-EB4 | 4 | 3 |
| Shewanella piezotolerans WP3 | 3 | 2 |
| Shewanella sediminis HAW-EB3 | 3 | 2 |
| Shewanella woodyi ATCC 51908 | 3 | 2 |
| Genes | Function | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||||||
| lysW |
*3
Shewanella oneidensis MR-1 Site: position = -257 score = 124.27 sequence = CTTTAAGTAGAGGCG... Gene: SO_1007: Predicted lysine transporter, NhaC family Site: position = -277 score = 108.87 sequence = TCTTAGAAGTAGAGA... Gene: SO_3142.3: Predicted lysine transporter, NhaC family Gene: SO_3142.2: Predicted lysine transporter, NhaC family |
*
Shewanella putrefaciens CN-32 Site: position = -278 score = 124.44 sequence = TCTTAGAAGTAGAGG... Gene: Sputcn32_2509: Predicted lysine transporter, NhaC family |
*
Shewanella sp W3-18-1 Site: position = -276 score = 124.44 sequence = TTAGAAGTAGAGGCG... Gene: Sputw3181_1499: Predicted lysine transporter, NhaC family |
*
Shewanella sp ANA-3 Site: position = -275 score = 124.79 sequence = TTAGAAGTAGAGGCG... Gene: Shewana3_1407: Predicted lysine transporter, NhaC family |
*
Shewanella sp MR-4 Site: position = -275 score = 124.79 sequence = TTAGAAGTAGAGGCG... Gene: Shewmr4_1354: Predicted lysine transporter, NhaC family |
*
Shewanella sp MR-7 Site: position = -275 score = 124.79 sequence = TTAGAAGTAGAGGCG... Gene: Shewmr7_1419: Predicted lysine transporter, NhaC family |
*
Shewanella baltica OS155 Site: position = -277 score = 117.55 sequence = TCTTAGAAGTAGAGG... Gene: Sbal_2845: Predicted lysine transporter, NhaC family |
*
Shewanella denitrificans OS217 Site: position = -262 score = 97.89 sequence = CCTTTATGGTAGAGG... Gene: Sden_2537: Predicted lysine transporter, NhaC family |
*
Shewanella frigidimarina NCIMB 400 Site: position = -301 score = 105.86 sequence = CAACAAAAGTAGAGG... Gene: Sfri_2746: Predicted lysine transporter, NhaC family |
*
Shewanella amazonensis SB2B Site: position = -275 score = 105.96 sequence = TCCTGAGTAGAGGTG... Gene: Sama_1171: Predicted lysine transporter, NhaC family |
*
Shewanella loihica PV-4 Site: position = -296 score = 103.31 sequence = CCTGAGACGTAGAGG... Gene: Shew_2582: Predicted lysine transporter, NhaC family |
*2
Shewanella pealeana ATCC 700345 Site: position = -301 score = 104.37 sequence = CCTGAGAAGTAGAGG... Gene: Spea_2853: Predicted lysine transporter, NhaC family Site: position = -257 score = 127.15 sequence = TCCTTTGAGTAGAGG... Gene: Spea_3259: Predicted lysine transporter, NhaC family |
*2
Shewanella halifaxensis HAW-EB4 Site: position = -256 score = 126.24 sequence = TCCTTTGAGTAGAGG... Gene: Shal_3334: Predicted lysine transporter, NhaC family Site: position = -302 score = 106.12 sequence = CCTGAGAAGTAGAGG... Gene: Shal_2943: Predicted lysine transporter, NhaC family |
*
Shewanella piezotolerans WP3 Site: position = -302 score = 101.03 sequence = CCTTAGAAGTAGAGG... Gene: swp_3470: Predicted lysine transporter, NhaC family |
*
Shewanella sediminis HAW-EB3 Site: position = -300 score = 109.77 sequence = TGAGAAGTAGAGGTG... Gene: Ssed_1447: Predicted lysine transporter, NhaC family |
*
Shewanella woodyi ATCC 51908 Site: position = -327 score = 108.95 sequence = CCTGAGAAGTAGAGG... Gene: Swoo_3234: Predicted lysine transporter, NhaC family |
Predicted lysine transporter, NhaC family |
| CRON 2. | |||||||||||||||||
| lysC |
*
Shewanella oneidensis MR-1 Site: position = -319 score = 84.19 sequence = AAGGAACAGAAGAGG... Gene: SO_3986: Aspartokinase (EC 2.7.2.4) |
*
Shewanella putrefaciens CN-32 Site: position = -324 score = 85.25 sequence = GGAACAGAAGAGGAG... Gene: Sputcn32_0680: Aspartokinase (EC 2.7.2.4) |
*
Shewanella sp W3-18-1 Site: position = -323 score = 85.25 sequence = AAGGAACAGAAGAGG... Gene: Sputw3181_3491: Aspartokinase (EC 2.7.2.4) |
*
Shewanella sp ANA-3 Site: position = -317 score = 85.22 sequence = GGAACAGAAGAGGAG... Gene: Shewana3_0652: Aspartokinase (EC 2.7.2.4) |
*
Shewanella sp MR-4 Site: position = -317 score = 85.22 sequence = GGAACAGAAGAGGAG... Gene: Shewmr4_0653: Aspartokinase (EC 2.7.2.4) |
*
Shewanella sp MR-7 Site: position = -319 score = 85.22 sequence = AAGGAACAGAAGAGG... Gene: Shewmr7_3369: Aspartokinase (EC 2.7.2.4) |
*
Shewanella baltica OS155 Site: position = -324 score = 88.81 sequence = GGAACAGAAGAGGAG... Gene: Sbal_0788: Aspartokinase (EC 2.7.2.4) |
*
Shewanella denitrificans OS217 Site: position = -349 score = 84.14 sequence = GAGGCACAGAAGAGG... Gene: Sden_2982: Aspartokinase (EC 2.7.2.4) |
*
Shewanella frigidimarina NCIMB 400 Site: position = -308 score = 85.44 sequence = GGAACAGAAGAGGAG... Gene: Sfri_0535: Aspartokinase (EC 2.7.2.4) |
*
Shewanella amazonensis SB2B Site: position = -313 score = 81.67 sequence = GGCACAGAAGAGGAG... Gene: Sama_0603: Aspartokinase (EC 2.7.2.4) |
*
Shewanella loihica PV-4 Site: position = -305 score = 95.19 sequence = GATACAGAAGAGGAG... Gene: Shew_0779: Aspartokinase (EC 2.7.2.4) |
*
Shewanella pealeana ATCC 700345 Site: position = -327 score = 77.77 sequence = AGTGCAGAAGAGGAG... Gene: Spea_0735: Aspartokinase (EC 2.7.2.4) |
*
Shewanella halifaxensis HAW-EB4 Site: position = -326 score = 80.22 sequence = ACTACAGAAGAGGAG... Gene: Shal_0788: Aspartokinase (EC 2.7.2.4) |
*
Shewanella piezotolerans WP3 Site: position = -316 score = 81.63 sequence = TGAGTACAGAAGAGG... Gene: swp_4345: Aspartokinase (EC 2.7.2.4) |
*
Shewanella sediminis HAW-EB3 Site: position = -309 score = 79.49 sequence = GGTACAGAAGAGGAG... Gene: Ssed_0817: Aspartokinase (EC 2.7.2.4) |
*
Shewanella woodyi ATCC 51908 Site: position = -309 score = 79.03 sequence = GGTACAGAAGAGGTG... Gene: Swoo_3764: Aspartokinase (EC 2.7.2.4) |
Aspartokinase (EC 2.7.2.4) |
| dapA |
Gene: SO_3985: Dihydrodipicolinate synthase (EC 4.2.1.52) |
|
|
Gene: Shewana3_0653: Dihydrodipicolinate synthase (EC 4.2.1.52) |
Gene: Shewmr4_0654: Dihydrodipicolinate synthase (EC 4.2.1.52) |
Gene: Shewmr7_3368: Dihydrodipicolinate synthase (EC 4.2.1.52) |
Gene: Sbal_0789: Dihydrodipicolinate synthase (EC 4.2.1.52) |
|
Gene: Sfri_0536: Dihydrodipicolinate synthase (EC 4.2.1.52) |
Gene: Sama_0604: Dihydrodipicolinate synthase (EC 4.2.1.52) |
Gene: Shew_0780: Dihydrodipicolinate synthase (EC 4.2.1.52) |
Gene: Spea_0736: Dihydrodipicolinate synthase (EC 4.2.1.52) |
Gene: Shal_0789: Dihydrodipicolinate synthase (EC 4.2.1.52) |
Gene: swp_4344: Dihydrodipicolinate synthase (EC 4.2.1.52) |
Gene: Ssed_0818: Dihydrodipicolinate synthase (EC 4.2.1.52) |
Gene: Swoo_3765: Dihydrodipicolinate synthase (EC 4.2.1.52) |
Dihydrodipicolinate synthase (EC 4.2.1.52) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |