Regulog Lysine - Shewanellaceae

Properties
Regulator type:	RNA regulatory element
Name:	Lysine
RFAM:	RF00168
Regulation mode:
Biological process:	Lysine biosynthesis
Effector:	Lysine
Phylum:	Proteobacteria

Member of regulog collections

By taxonomy - Shewanellaceae
By RNA motif - Lysine
By effector - Lysine
By pathway - Lysine biosynthesis

Statistics of regulated genes
Genome	Genes	Operons
Shewanella oneidensis MR-1	5	3
Shewanella putrefaciens CN-32	2	2
Shewanella sp W3-18-1	2	2
Shewanella sp ANA-3	3	2
Shewanella sp MR-4	3	2
Shewanella sp MR-7	3	2
Shewanella baltica OS155	3	2
Shewanella denitrificans OS217	2	2
Shewanella frigidimarina NCIMB 400	2	2
Shewanella amazonensis SB2B	3	2
Shewanella loihica PV-4	3	2
Shewanella pealeana ATCC 700345	4	3
Shewanella halifaxensis HAW-EB4	4	3
Shewanella piezotolerans WP3	3	2
Shewanella sediminis HAW-EB3	3	2
Shewanella woodyi ATCC 51908	3	2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																	Function

CRON 1.
lysW	3 Shewanella oneidensis MR-1* Site: position = -257 score = 124.27 sequence = CTTTAAGTAGAGGCG... Gene: SO_1007: Predicted lysine transporter, NhaC family Site: position = -277 score = 108.87 sequence = TCTTAGAAGTAGAGA... Gene: SO_3142.3: Predicted lysine transporter, NhaC family Gene: SO_3142.2: Predicted lysine transporter, NhaC family	* Shewanella putrefaciens CN-32 Site: position = -278 score = 124.44 sequence = TCTTAGAAGTAGAGG... Gene: Sputcn32_2509: Predicted lysine transporter, NhaC family	* Shewanella sp W3-18-1 Site: position = -276 score = 124.44 sequence = TTAGAAGTAGAGGCG... Gene: Sputw3181_1499: Predicted lysine transporter, NhaC family	* Shewanella sp ANA-3 Site: position = -275 score = 124.79 sequence = TTAGAAGTAGAGGCG... Gene: Shewana3_1407: Predicted lysine transporter, NhaC family	* Shewanella sp MR-4 Site: position = -275 score = 124.79 sequence = TTAGAAGTAGAGGCG... Gene: Shewmr4_1354: Predicted lysine transporter, NhaC family	* Shewanella sp MR-7 Site: position = -275 score = 124.79 sequence = TTAGAAGTAGAGGCG... Gene: Shewmr7_1419: Predicted lysine transporter, NhaC family	* Shewanella baltica OS155 Site: position = -277 score = 117.55 sequence = TCTTAGAAGTAGAGG... Gene: Sbal_2845: Predicted lysine transporter, NhaC family	* Shewanella denitrificans OS217 Site: position = -262 score = 97.89 sequence = CCTTTATGGTAGAGG... Gene: Sden_2537: Predicted lysine transporter, NhaC family	* Shewanella frigidimarina NCIMB 400 Site: position = -301 score = 105.86 sequence = CAACAAAAGTAGAGG... Gene: Sfri_2746: Predicted lysine transporter, NhaC family	* Shewanella amazonensis SB2B Site: position = -275 score = 105.96 sequence = TCCTGAGTAGAGGTG... Gene: Sama_1171: Predicted lysine transporter, NhaC family	* Shewanella loihica PV-4 Site: position = -296 score = 103.31 sequence = CCTGAGACGTAGAGG... Gene: Shew_2582: Predicted lysine transporter, NhaC family	2 Shewanella pealeana ATCC 700345* Site: position = -301 score = 104.37 sequence = CCTGAGAAGTAGAGG... Gene: Spea_2853: Predicted lysine transporter, NhaC family Site: position = -257 score = 127.15 sequence = TCCTTTGAGTAGAGG... Gene: Spea_3259: Predicted lysine transporter, NhaC family	2 Shewanella halifaxensis HAW-EB4* Site: position = -256 score = 126.24 sequence = TCCTTTGAGTAGAGG... Gene: Shal_3334: Predicted lysine transporter, NhaC family Site: position = -302 score = 106.12 sequence = CCTGAGAAGTAGAGG... Gene: Shal_2943: Predicted lysine transporter, NhaC family	* Shewanella piezotolerans WP3 Site: position = -302 score = 101.03 sequence = CCTTAGAAGTAGAGG... Gene: swp_3470: Predicted lysine transporter, NhaC family	* Shewanella sediminis HAW-EB3 Site: position = -300 score = 109.77 sequence = TGAGAAGTAGAGGTG... Gene: Ssed_1447: Predicted lysine transporter, NhaC family	* Shewanella woodyi ATCC 51908 Site: position = -327 score = 108.95 sequence = CCTGAGAAGTAGAGG... Gene: Swoo_3234: Predicted lysine transporter, NhaC family	Predicted lysine transporter, NhaC family

CRON 2.
lysC	* Shewanella oneidensis MR-1 Site: position = -319 score = 84.19 sequence = AAGGAACAGAAGAGG... Gene: SO_3986: Aspartokinase (EC 2.7.2.4)	* Shewanella putrefaciens CN-32 Site: position = -324 score = 85.25 sequence = GGAACAGAAGAGGAG... Gene: Sputcn32_0680: Aspartokinase (EC 2.7.2.4)	* Shewanella sp W3-18-1 Site: position = -323 score = 85.25 sequence = AAGGAACAGAAGAGG... Gene: Sputw3181_3491: Aspartokinase (EC 2.7.2.4)	* Shewanella sp ANA-3 Site: position = -317 score = 85.22 sequence = GGAACAGAAGAGGAG... Gene: Shewana3_0652: Aspartokinase (EC 2.7.2.4)	* Shewanella sp MR-4 Site: position = -317 score = 85.22 sequence = GGAACAGAAGAGGAG... Gene: Shewmr4_0653: Aspartokinase (EC 2.7.2.4)	* Shewanella sp MR-7 Site: position = -319 score = 85.22 sequence = AAGGAACAGAAGAGG... Gene: Shewmr7_3369: Aspartokinase (EC 2.7.2.4)	* Shewanella baltica OS155 Site: position = -324 score = 88.81 sequence = GGAACAGAAGAGGAG... Gene: Sbal_0788: Aspartokinase (EC 2.7.2.4)	* Shewanella denitrificans OS217 Site: position = -349 score = 84.14 sequence = GAGGCACAGAAGAGG... Gene: Sden_2982: Aspartokinase (EC 2.7.2.4)	* Shewanella frigidimarina NCIMB 400 Site: position = -308 score = 85.44 sequence = GGAACAGAAGAGGAG... Gene: Sfri_0535: Aspartokinase (EC 2.7.2.4)	* Shewanella amazonensis SB2B Site: position = -313 score = 81.67 sequence = GGCACAGAAGAGGAG... Gene: Sama_0603: Aspartokinase (EC 2.7.2.4)	* Shewanella loihica PV-4 Site: position = -305 score = 95.19 sequence = GATACAGAAGAGGAG... Gene: Shew_0779: Aspartokinase (EC 2.7.2.4)	* Shewanella pealeana ATCC 700345 Site: position = -327 score = 77.77 sequence = AGTGCAGAAGAGGAG... Gene: Spea_0735: Aspartokinase (EC 2.7.2.4)	* Shewanella halifaxensis HAW-EB4 Site: position = -326 score = 80.22 sequence = ACTACAGAAGAGGAG... Gene: Shal_0788: Aspartokinase (EC 2.7.2.4)	* Shewanella piezotolerans WP3 Site: position = -316 score = 81.63 sequence = TGAGTACAGAAGAGG... Gene: swp_4345: Aspartokinase (EC 2.7.2.4)	* Shewanella sediminis HAW-EB3 Site: position = -309 score = 79.49 sequence = GGTACAGAAGAGGAG... Gene: Ssed_0817: Aspartokinase (EC 2.7.2.4)	* Shewanella woodyi ATCC 51908 Site: position = -309 score = 79.03 sequence = GGTACAGAAGAGGTG... Gene: Swoo_3764: Aspartokinase (EC 2.7.2.4)	Aspartokinase (EC 2.7.2.4)
dapA	Shewanella oneidensis MR-1 Gene: SO_3985: Dihydrodipicolinate synthase (EC 4.2.1.52)	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	Shewanella sp ANA-3 Gene: Shewana3_0653: Dihydrodipicolinate synthase (EC 4.2.1.52)	Shewanella sp MR-4 Gene: Shewmr4_0654: Dihydrodipicolinate synthase (EC 4.2.1.52)	Shewanella sp MR-7 Gene: Shewmr7_3368: Dihydrodipicolinate synthase (EC 4.2.1.52)	Shewanella baltica OS155 Gene: Sbal_0789: Dihydrodipicolinate synthase (EC 4.2.1.52)	Shewanella denitrificans OS217	Shewanella frigidimarina NCIMB 400 Gene: Sfri_0536: Dihydrodipicolinate synthase (EC 4.2.1.52)	Shewanella amazonensis SB2B Gene: Sama_0604: Dihydrodipicolinate synthase (EC 4.2.1.52)	Shewanella loihica PV-4 Gene: Shew_0780: Dihydrodipicolinate synthase (EC 4.2.1.52)	Shewanella pealeana ATCC 700345 Gene: Spea_0736: Dihydrodipicolinate synthase (EC 4.2.1.52)	Shewanella halifaxensis HAW-EB4 Gene: Shal_0789: Dihydrodipicolinate synthase (EC 4.2.1.52)	Shewanella piezotolerans WP3 Gene: swp_4344: Dihydrodipicolinate synthase (EC 4.2.1.52)	Shewanella sediminis HAW-EB3 Gene: Ssed_0818: Dihydrodipicolinate synthase (EC 4.2.1.52)	Shewanella woodyi ATCC 51908 Gene: Swoo_3765: Dihydrodipicolinate synthase (EC 4.2.1.52)	Dihydrodipicolinate synthase (EC 4.2.1.52)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog Lysine - Shewanellaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --