Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Profile of regulator TPP in Shewanellaceae

Properties
Regulator family: RF00059
Regulation mode:
Biological process: Thiamine biosynthesis
Effector: Thiamine pyrophosphate
Regulog: TPP - Shewanellaceae
Member of regulog collections
Transcription factor binding sites
Locus Tag Name Position Score Sequence
Shewanella amazonensis SB2B
Sama_1860 thiC -253 71 CCAGCACTTGTCGGAGTGCCTTAGGGCTGAGACCGTTTATTCGGGATCCGTTGAACCTGATCAGGTTAGAACCTGCGAAGGAAACAAGCATCAAATCCAC
Sama_1451 omp_thi -158 69 GCGGCGCCAAGGGGTGTCTGCCGCATGCAGACTGAGATGTCTCAGGACGAACCCTTAGAACCTGATCCGGCTGATACCGGCGTAGGAATGGGCTGATACTGCAAATT
Shewanella baltica OS155
Sbal_1802 omp_thi -179 72.2 GCGTCGCCAAGGGGTGTTTGCAGCGAATTAATTTACGTTGATTACTGCAAACTGAGATGTCAGTTGACGAACCCTTAGAACCTGATCCGGCTAATACCGGCGTAGGAATGGGCCAATCAACAGCACA
Shewanella denitrificans OS217
Sden_1770 thiC -384 76.3 ACCTCTTGTCGGAGTGCCATTTATGGCTGAGACCGTTTATTCGGGATCCGTTGAACCTGATCAGGCTAACACCTGCGAAGGAAACAAGCATGATAATCTTGT
Sden_2321 omp_thi -164 71.4 CCCTCGCGCCAAGGGGTGTTAGGGCTAGTTGCTCTGACTGAGATATCGTTTGATAAACCCTTAGAACCTGATCCGGCTAATACCGGCGTAGGAATGGGCTTATTATTCGCG
Shewanella frigidimarina NCIMB 400
Sfri_2201 thiC -307 75.1 TGACATCTTGTCGGAGTGCCATTATGGCTGAGACCGTTTATTCGGGATCCGTTGAACCTGATCAGGCTAGAACCTGCGAAGGAAACAAGCGTAATAATCAT
Sfri_1526 omp_thi -164 72 TGGCCGCCAAGGGGTGTTCAGTAAAACCTGAACTGAGATGTCTGTATGACGAACCCTTAGAACCTGATCCGGCTTATACCGGCGTAGGAATGGGCCACACTATCTTTAT
Shewanella halifaxensis HAW-EB4
Shal_1900 thiC -243 71.6 TCATCTTGTCGGAGTGCCATATGGCTGAGACCGTTAATTCGGGATCCGTTGAACCTGATCAGGCTAGAACCTGCGAAGGAAACAAGCGAAATAACTGCAG
Shal_2461 omp_thi -184 66.4 CGCGCTCGCCAAGGGGTGTTAAAGTCTATAAACCGAAAGTTGGATTTATTGGCGTTGACTGAGATGTTGCAAAACGAACCCTTTGAACCTGATCCGGCTAATACCGGCGTAGGAATGGGCCAAAAGTCATTT
Shewanella loihica PV-4
Shew_2096 thiC -277 68.1 GCCCCTCTTGTCGGAGTGCCATTAGGCTGAGACCGTTTATTCGGGATCCGTTGAACCTGATCAGGTTAGTCCCTGCGAAGGAAACAAGCATAATATGACC
Shew_1735 omp_thi -192 69.4 GCCTCGCCAAGGGGTGTTAACGCCAAGCCATAGCTTAGCGATTGACTGAGATGTCCGCGGGACGAACCCTTAGAACCTGATCCGGCTAATACCGGCGTAGGAATGGGCCACATCACTAGATT
Shewanella oneidensis MR-1
SO_2445 thiC -261 72.9 GGTCATCTTGTCGGAGTGCCTTTTGGCTGAGACCGTTTATTCGGGATCCGTTGAACCTGATCAGGTTAAAACCTGCGAAGGAAACAAGCATAATAACTTC
SO_2715 omp_thi -164 67.6 AAGCGCCGCCAAGGGGTGTTTGCCAAAATTCGGCAGACTGAGATGTCATCAGACGAACCCTTAGAACCTGATCCGGCTAATACCGGCGTAGGAATGGGCCAATCAACAGCA
Shewanella pealeana ATCC 700345
Spea_2383 thiC -246 71 GCTCATCTTGTCGGAGTGCCATATGGCTGAGACCGTTAATTCGGGATCCGTTGAACCTGATCAGGCTAGAACCTGCGAAGGAAACAAGCGAAACTACTGC
Spea_1828 omp_thi -182 66.8 CGCTCGCCAAGGGGTGTTAAAGTCTATAAACCGAAAGTTGGATTTATAGATTTTGACTGAGATGTTGAAAAACGAACCCTTTGAACCTGATCCGGCTAATACCGGCGTAGGAATGGGCCACAATTCATTTTC
Shewanella piezotolerans WP3
swp_2330 thiC -170 72.9 TCATCTTGTCGGAGTGCCATATGGCTGAGACCGTTTATTCGGGATCCGTTGAACCTGATCAGGCTAGAACCTGCGAAGGAAACAAGCGAAATTTTTGCAT
swp_2907 omp_thi -183 69.1 CGGCGGTGCCAAGGGGTGTTAAGTCTATAGGGCGAAAGTTGTAATTTTATAGGCTTAACTGAGATGTTGAAAAACAAACCCTTTGAACCTGATCCGGCTAATACCGGCGTAGGAATGGGCCACAATTCATTT
Shewanella putrefaciens CN-32
Sputcn32_1922 thiC -298 72.7 TCATCTTGTCGGAGTGCCTCTTGGCTGAGACCGTTTATTCGGGATCCGTTGAACCTGATCAGGTTAAAACCTGCGAAGGAAACAAGCGTAATAACACACA
Sputcn32_1660 omp_thi -181 67.6 GCGCCGCCAAGGGGTGTTTGCAGCGAGTTCACTTTAACTCTAGTGACTGCAAACTGAGATGTCATCAGACGAACCCTTAGAACCTGATCCGGCTAATACCGGCGTAGGAATGGGCCAATCAACAGCACA
Shewanella sediminis HAW-EB3
Ssed_2013 thiC -298 70.2 ACATCTTGTCGGAGTGCCTATTGGCTGAGACCGTTTATTCGGGATCCGTTGAACCTGATCGTGTTAATACTCGCGAAGGAAACAAGCATGATAATTACAG
Ssed_2752 omp_thi -186 67.5 TGCCGGCGCCAAGGGGTGATGCTGTGCTGATAATATTAGTGCCGTGTCTGAGATGTCATAAGACAAACCCTTTGAACCTGATCCGGCTAATACCGGCGTAGGAATGGGCCAATAAGTACAA
Shewanella sp ANA-3
Shewana3_1936 thiC -257 72.6 CCATCTTGTCGGAGTGCCTCTTGGCTGAGACCGTTTATTCGGGATCCGTTGAACCTGATCAGGTTAAAACCTGCGAAGGAAACAAGCATAATAACATCCA
Shewana3_2500 omp_thi -165 67.3 TAGCGCCGCCAAGGGGTGTTTGCCAACAAAGTGGCAGACTGAGATGTCATCAGACGAACCCTTAGAACCTGATCCGGCTAATACCGGCGTAGGAATGGGCCAATCAACAGCA
Shewanella sp MR-4
Shewmr4_1881 thiC -256 72.6 CCATCTTGTCGGAGTGCCTCTTGGCTGAGACCGTTTATTCGGGATCCGTTGAACCTGATCAGGTTAAAACCTGCGAAGGAAACAAGCATAATAACATCCA
Shewmr4_2310 omp_thi -165 67.3 TAGCGCCGCCAAGGGGTGTTTGCCAACAAAGTGGCAGACTGAGATGTCATCAGACGAACCCTTAGAACCTGATCCGGCTAATACCGGCGTAGGAATGGGCCAATCAACAGCA
Shewanella sp MR-7
Shewmr7_2097 thiC -258 72.6 GCCCATCTTGTCGGAGTGCCTCTTGGCTGAGACCGTTTATTCGGGATCCGTTGAACCTGATCAGGTTAAAACCTGCGAAGGAAACAAGCATAATAACATC
Shewmr7_2380 omp_thi -165 67.3 TAGCGCCGCCAAGGGGTGTTTGCCAACAAAGTGGCAGACTGAGATGTCATCAGACGAACCCTTAGAACCTGATCCGGCTAATACCGGCGTAGGAATGGGCCAATCAACAGCA
Shewanella sp W3-18-1
Sputw3181_2086 thiC -300 75.1 ACTCATCTTGTCGGAGTGCCTCTTGGCTGAGACCGTTTATTCGGGATCCGTTGAACCTGATCAGGTTAATACCTGCGAAGGAAACAAGCGTAATAACACA
Sputw3181_2365 omp_thi -183 67.6 AAGCGCCGCCAAGGGGTGTTTGCAGCGAGTTCACTTTAACTCTAGTGACTGCAAACTGAGATGTCATCAGACGAACCCTTAGAACCTGATCCGGCTAATACCGGCGTAGGAATGGGCCAATCAACAGCA
Shewanella woodyi ATCC 51908
Swoo_2592 thiC -243 76.3 TGGCATCTTGTCGGAGTGCCTAAAGGCTGAGACCGTTAATTCGGGATCCGTTGAACCTGATCGGGTTAATACCCGCGAAGGAAACAAGCATGATAAAAAC
Swoo_1886 omp_thi -188 70.5 CCGGCGCCAAGGGGTGATGCTGCATATAATGCGGCATCTGAGATGTCTTATGACAAACCCTTTGAACCTGATCCGGCTTATACCGGCGTAGGAATGGGCCAAATTTTGATCGT
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