Regulon of CodY in Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305
| Regulator type: | Transcription factor |
| TF locus tag: | SSP1513 |
| Regulator family: | CodY |
| Regulation mode: | repressor |
| Biological process: | Amino acid metabolism |
| Effector: | Branched-chain amino acids |
| Regulog: | CodY - Staphylococcaceae |
| Statistics of regulated genes: | |
| - Genes | 105 |
| - Operons | 50 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Staphylococcaceae
- By TF family - CodY
- By effector - Branched-chain amino acids
- By pathway - Amino acid metabolism
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -104
Score: 4.3 Sequence: ATAATTCAAAATAAT
Locus tag: SSP1542
Name: aur Funciton: zinc metalloproteinase aureolysin |
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aur
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zinc metalloproteinase aureolysin
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Position: -63
Score: 4.2 Sequence: ATTATATTGAATATT
Locus tag: SSP0936
Name: artQ Funciton: Arginine ABC transport system ArtQ
Locus tag: SSP0937
Name: artQ Funciton: Arginine ABC transport system ArtQ
Locus tag: SSP0938
Name: artM Funciton: Arginine ABC transport system ATP-binding protein ArtM |
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artQ
|
Arginine ABC transport system ArtQ
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artQ
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Arginine ABC transport system ArtQ
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artM
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Arginine ABC transport system ATP-binding protein ArtM
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Position: -113
Score: 4.6 Sequence: ATTTTTATGAATATT
Locus tag: SSP1278
Name: aroC Funciton: chorismate synthase
Locus tag: SSP1279
Name: aroB Funciton: 3-dehydroquinate synthase
Locus tag: SSP1280
Name: aroA Funciton: 5-enolpyruvylshikimate-3-phosphate synthase
Locus tag: SSP1281
Name: SA1296 Funciton: hypothetical protein
Locus tag: SSP1282
Name: SA1295 Funciton: hypothetical protein
Locus tag: SSP1283
Name: SA1294 Funciton: hypothetical protein
Locus tag: SSP1284
Name: SA1293 Funciton: hypothetical protein |
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aroC
|
chorismate synthase
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aroB
|
3-dehydroquinate synthase
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aroA
|
5-enolpyruvylshikimate-3-phosphate synthase
|
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SA1296
|
hypothetical protein
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SA1295
|
hypothetical protein
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SA1294
|
hypothetical protein
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SA1293
|
hypothetical protein
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Position: -119
Score: 4.9 Sequence: AATTTTCAAAATAAT
Locus tag: SSP1029
Name: acuA Funciton: acetoin utilization protein
Locus tag: SSP1028
Name: acuC Funciton: acetoin utilization protein |
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acuA
|
acetoin utilization protein
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acuC
|
acetoin utilization protein
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Position: -75
Score: 4.9 Sequence: ATTATTTTGAAAATT
Locus tag: SSP1030
Name: acsA Funciton: acetyl-CoA synthetase |
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acsA
|
acetyl-CoA synthetase
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Position: -38
Score: 5.1 Sequence: ATTTTTCTGAAAATT
Locus tag: SSP2052
Name: yxjH Funciton: putative methionine synthase II |
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yxjH
|
putative methionine synthase II
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Position: -90
Score: 4.5 Sequence: AAAAATTAGAATATT
Position: -81
Score: 5.2 Sequence: AATATTTAGAAAATT
Locus tag: SSP0585
Name: yocS Funciton: Uncharacterized sodium-dependent transporter yocS |
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yocS
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Uncharacterized sodium-dependent transporter yocS
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Position: -36
Score: 4.8 Sequence: ACTATTCTGAAAATT
Locus tag: SSP1387
Name: tyrA Funciton: prephenate dehydrogenase |
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tyrA
|
prephenate dehydrogenase
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Position: -118
Score: 4.1 Sequence: AAATAACAGAATATT
Position: -109
Score: 4.6 Sequence: AATATTCTCAATATT
Locus tag: SSP1991
Name: tppB Funciton: di-tripepride ABC transporter |
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tppB
|
di-tripepride ABC transporter
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Position: -35
Score: 4.7 Sequence: AATTTTCTGATTTTT
Locus tag: SSP1439
Name: thrA Funciton: aspartokinase III |
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thrA
|
aspartokinase III
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Position: -138
Score: 4.6 Sequence: AATTATCAGAAAATA
Locus tag: SSP2329
Name: tcyP Funciton: L-cystine uptake protein tcyP |
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tcyP
|
L-cystine uptake protein tcyP
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Position: -182
Score: 4.2 Sequence: AATTTTTAAAATTGT
Locus tag: SSP1203
Name: sodA Funciton: superoxide dismutase SodA |
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sodA
|
superoxide dismutase SodA
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Position: -98
Score: 5.3 Sequence: AATTTTCTGAATATT
Position: -89
Score: 4.3 Sequence: AATATTTAGATATAT
Locus tag: SSP0274
Name: SA2396 Funciton: putative amino acid transporter |
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SA2396
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putative amino acid transporter
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Position: -65
Score: 5.3 Sequence: AATATTCTGAAAATT
Position: -56
Score: 4.2 Sequence: AAAATTAAGAAAATA
Locus tag: SSP0292
Name: SA2357 Funciton: putative regulatory protein |
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SA2357
|
putative regulatory protein
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Position: -75
Score: 4.9 Sequence: TATTTTCAGAATATT
Locus tag: SSP0435
Name: SA2261 Funciton: putative p-aminobenzoyl-glutamate transporter |
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SA2261
|
putative p-aminobenzoyl-glutamate transporter
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Position: -165
Score: 4.9 Sequence: AATATTCTGAAAATA
Locus tag: SSP0436
Name: SA2260 Funciton: putative short chain dehydrogenase |
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SA2260
|
putative short chain dehydrogenase
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Position: -88
Score: 4.4 Sequence: AATTGTTTAAATTTT
Position: -79
Score: 4.4 Sequence: AATTTTTTGAATTTA
Locus tag: SSP0591
Name: SA2109 Funciton: probable amino-acid or metabolite transporter |
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SA2109
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probable amino-acid or metabolite transporter
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Position: -55
Score: 4.9 Sequence: TATTTTCTGAAAATT
Locus tag: SSP1040
Name: SA1544 Funciton: putative phosphoserine transaminase
Locus tag: SSP1039
Name: serA Funciton: D-3-phosphoglycerate dehydrogenase |
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SA1544
|
putative phosphoserine transaminase
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serA
|
D-3-phosphoglycerate dehydrogenase
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Position: -67
Score: 4.6 Sequence: AATATTTTGATAAAT
Locus tag: SSP1221
Name: SA1364 Funciton: putative sulfurtransferase |
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SA1364
|
putative sulfurtransferase
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Position: -121
Score: 4.6 Sequence: ATTTATCAAAATATT
Locus tag: SSP1222
Name: SA1363 Funciton: Lipoate-protein ligase A |
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SA1363
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Lipoate-protein ligase A
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Position: -174
Score: 4.5 Sequence: AATTTTTATAAATTT
Position: -80
Score: 4.6 Sequence: AAAAGTCTGAATATT
Locus tag: SSP1756
Name: SA0883 Funciton: hypothetical protein |
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SA0883
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hypothetical protein
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Position: -190
Score: 5.1 Sequence: AATTTTCAGAAAAAT
Locus tag: SSP2051
Name: SA0626 Funciton: hypothetical protein |
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SA0626
|
hypothetical protein
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Position: -166
Score: 4.8 Sequence: AAATTTCAGAATTTT
Locus tag: SSP2074
Name: SA0601 Funciton: hypothetical protein |
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SA0601
|
hypothetical protein
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Position: -193
Score: 4.3 Sequence: AATAATTTAACTATT
Locus tag: SSP2331
Name: SA0367 Funciton: putative NADPH-flavin oxidoreductase |
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SA0367
|
putative NADPH-flavin oxidoreductase
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Position: -127
Score: 4.6 Sequence: ACTTATCTGAAAATT
Locus tag: SSP2412
Name: SA0348 Funciton: putative transcriptional regulator |
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SA0348
|
putative transcriptional regulator
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Position: -99
Score: 4.8 Sequence: ATTTATCAGAAAATT
Locus tag: SSP0460
Name: SA0165 Funciton: hypothetical protein |
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SA0165
|
hypothetical protein
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Position: -111
Score: 4.4 Sequence: AATATTTAAACATTT
Locus tag: SSP1433
Name: rocC Funciton: amino acid permease |
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rocC
|
amino acid permease
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Position: -38
Score: 4.7 Sequence: ACTTTTTAGAAAATT
Position: -29
Score: 4.1 Sequence: AAAATTCAAAATTTA
Locus tag: SSP1675
Name: pycA Funciton: pyruvate carboxylase |
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pycA
|
pyruvate carboxylase
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Position: -56
Score: 4.8 Sequence: ATATTTCTGAATATT
Locus tag: SSP1794
Name: oppB Funciton: oligopeptide ABC transporter permease protein OppB
Locus tag: SSP1793
Name: oppC Funciton: oligopeptide ABC transporter permease protein OppC
Locus tag: SSP1792
Name: oppD Funciton: oligopeptide ABC transporter ATP-binding protein OppD
Locus tag: SSP1791
Name: oppF Funciton: oligopeptide ABC transporter ATP-binding protein OppF
Locus tag: SSP1790
Name: oppA Funciton: oligopeptide ABC transporter OppA oligopeptide-binding protein |
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oppB
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oligopeptide ABC transporter permease protein OppB
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oppC
|
oligopeptide ABC transporter permease protein OppC
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oppD
|
oligopeptide ABC transporter ATP-binding protein OppD
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oppF
|
oligopeptide ABC transporter ATP-binding protein OppF
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oppA
|
oligopeptide ABC transporter OppA oligopeptide-binding protein
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Position: -203
Score: 4.3 Sequence: AATATTCTGATAAAA
Locus tag: SSP0294
Name: mtnE Funciton: transaminase MtnE involved in methionine biosynthesis via salvage pathway
Locus tag: SSP0295
Name: ddh2 Funciton: D-lactate dehydrogenase |
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mtnE
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transaminase MtnE involved in methionine biosynthesis via salvage pathway
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ddh2
|
D-lactate dehydrogenase
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Position: -230
Score: 4.8 Sequence: AATAATTAGAAAATT
Position: -221
Score: 4 Sequence: AAAATTATGATATTT
Locus tag: SSP0012
Name: metX Funciton: homoserine-o-acetyltransferase |
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metX
|
homoserine-o-acetyltransferase
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Position: -274
Score: 4.6 Sequence: ATTTGTTAGAAAATT
Position: -265
Score: 4.4 Sequence: AAAATTTAAAATAAT
Locus tag: SSP1866
Name: metN Funciton: Methionine ABC transporter, ATP-binding protein
Locus tag: SSP1865
Name: metP Funciton: Methionine ABC transporter, permease protein
Locus tag: SSP1864
Name: metQ Funciton: Methionine ABC transporter, methionine-binding lipoprotein |
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metN
|
Methionine ABC transporter, ATP-binding protein
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metP
|
Methionine ABC transporter, permease protein
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metQ
|
Methionine ABC transporter, methionine-binding lipoprotein
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Position: -502
Score: 4.6 Sequence: AATTTTCAGATAAGT
Locus tag: SSP2413
Name: metI Funciton: cystathionine gamma-synthase
Locus tag: SSP2414
Name: metC Funciton: cystathionine beta-lyase
Locus tag: SSP2415
Name: metF Funciton: 5,10-methylenetetrahydrofolate reductase protein
Locus tag: SSP2416
Name: metE Funciton: 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferase
Locus tag: SSP2417
Name: mdh Funciton: hypothetical metal-dependent hydrolase |
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metI
|
cystathionine gamma-synthase
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metC
|
cystathionine beta-lyase
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metF
|
5,10-methylenetetrahydrofolate reductase protein
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metE
|
5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferase
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mdh
|
hypothetical metal-dependent hydrolase
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Position: -350
Score: 4.5 Sequence: ATTTTTCAGTAAATT
Position: -341
Score: 4.3 Sequence: TAAATTTAAAAAATT
Locus tag: SSP1357
Name: lysC Funciton: aspartokinase II
Locus tag: SSP1356
Name: asd Funciton: aspartate semialdehyde dehydrogenase
Locus tag: SSP1355
Name: dapA Funciton: dihydrodipicolinate synthase
Locus tag: SSP1354
Name: dapB Funciton: dihydrodipicolinate reductase
Locus tag: SSP1353
Name: dapD Funciton: tetrahydrodipicolinate acetyltransferase |
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lysC
|
aspartokinase II
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asd
|
aspartate semialdehyde dehydrogenase
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dapA
|
dihydrodipicolinate synthase
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dapB
|
dihydrodipicolinate reductase
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dapD
|
tetrahydrodipicolinate acetyltransferase
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Position: -129
Score: 4.4 Sequence: AAATGTTTAAATATT
Locus tag: SSP1432
Name: katA Funciton: catalase |
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katA
|
catalase
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Position: -86
Score: 5.2 Sequence: AATTTTTTGAAAATT
Locus tag: SSP2163
Name: ilvE Funciton: branched-chain amino acid aminotroansferase |
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ilvE
|
branched-chain amino acid aminotroansferase
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Position: -323
Score: 4.2 Sequence: AATTGACAGAAAAAT
Position: -266
Score: 4 Sequence: ATTTATCAAATTTTT
Position: -258
Score: 4.7 Sequence: AATTTTTAGATATTT
Position: -249
Score: 4.1 Sequence: ATATTTCAAACAAAT
Locus tag: SSP0825
Name: ilvD Funciton: dihydroxy-acid dehydratase
Locus tag: SSP0824
Name: ilvB Funciton: acetolactate synthase large subunit
Locus tag: SSP0823
Name: ilvH Funciton: acetolactate synthase small subunit
Locus tag: SSP0822
Name: ilvC Funciton: alpha-keto-beta-hydroxylacil reductoisomerase
Locus tag: SSP0821
Name: leuA Funciton: 2-isopropylmalate synthase
Locus tag: SSP0820
Name: leuB Funciton: 3-isopropylmalate dehydrogenase
Locus tag: SSP0819
Name: leuC Funciton: 3-isopropylmalate dehydratase large subunit
Locus tag: SSP0818
Name: leuD Funciton: 3-isopropylmalate dehydratase small subunit
Locus tag: SSP0817
Name: ilvA Funciton: thereonine dehydratase |
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ilvD
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dihydroxy-acid dehydratase
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ilvB
|
acetolactate synthase large subunit
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ilvH
|
acetolactate synthase small subunit
|
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ilvC
|
alpha-keto-beta-hydroxylacil reductoisomerase
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leuA
|
2-isopropylmalate synthase
|
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leuB
|
3-isopropylmalate dehydrogenase
|
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leuC
|
3-isopropylmalate dehydratase large subunit
|
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leuD
|
3-isopropylmalate dehydratase small subunit
|
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ilvA
|
thereonine dehydratase
|
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Position: -168
Score: 4.7 Sequence: AAAAATCAGAAAATT
Locus tag: SSP1438
Name: hom Funciton: homoserine dehydrogenase
Locus tag: SSP1437
Name: thrC Funciton: threonine synthase
Locus tag: SSP1436
Name: thrB Funciton: homoserine kinase
Locus tag: SSP1435
Name: SA1167 Funciton: putative hydrolase of the HAD superfamily |
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hom
|
homoserine dehydrogenase
|
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thrC
|
threonine synthase
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thrB
|
homoserine kinase
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SA1167
|
putative hydrolase of the HAD superfamily
|
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Position: -190
Score: 4.1 Sequence: TATTTTTATAAATTT
Position: -181
Score: 4.6 Sequence: AAATTTCAGAAAATG
Locus tag: SSP0752
Name: hmrA Funciton: N-acyl-L-amino acid amidohydrolase
Locus tag: SSP0753
Name: SA1934 Funciton: hypothetical protein |
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hmrA
|
N-acyl-L-amino acid amidohydrolase
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SA1934
|
hypothetical protein
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Position: -109
Score: 4.8 Sequence: CATTTTCAGAATATT
Locus tag: SSP0431
Name: hisZ Funciton: ATP phosphoribosyltransferase regulatory subunit
Locus tag: SSP0430
Name: hisG Funciton: ATP phosphoribosyltransferase
Locus tag: SSP0429
Name: hisD Funciton: histidinol dehydrogenase
Locus tag: SSP0428
Name: hisC Funciton: histidinol-phosphate aminotransferase
Locus tag: SSP0427
Name: hisB Funciton: imidazoleglycerol-phosphate dehydratase
Locus tag: SSP0426
Name: hisH Funciton: imidazole glycerol phosphate synthase glutamine amidotransferase subunit
Locus tag: SSP0425
Name: hisA Funciton: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
Locus tag: SSP0424
Name: hisF Funciton: imidazoleglycerol-phosphate synthase
Locus tag: SSP0423
Name: hisI Funciton: histidine biosynthesis bifunctional protein HisIE |
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hisZ
|
ATP phosphoribosyltransferase regulatory subunit
|
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hisG
|
ATP phosphoribosyltransferase
|
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hisD
|
histidinol dehydrogenase
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hisC
|
histidinol-phosphate aminotransferase
|
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hisB
|
imidazoleglycerol-phosphate dehydratase
|
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hisH
|
imidazole glycerol phosphate synthase glutamine amidotransferase subunit
|
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hisA
|
phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
|
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hisF
|
imidazoleglycerol-phosphate synthase
|
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hisI
|
histidine biosynthesis bifunctional protein HisIE
|
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Position: -118
Score: 5 Sequence: AAAATTCTGAAAATT
Locus tag: SSP2285
Name: gltC Funciton: transcription activator of glutamate synthase operon |
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gltC
|
transcription activator of glutamate synthase operon
|
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Position: -34
Score: 5 Sequence: AATTTTCAGAATTTT
Locus tag: SSP2284
Name: gltB Funciton: glutamate synthase large subunit
Locus tag: SSP2283
Name: gltD Funciton: NADPH-dependent glutamate synthase beta subunit |
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gltB
|
glutamate synthase large subunit
|
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gltD
|
NADPH-dependent glutamate synthase beta subunit
|
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Position: -179
Score: 4.2 Sequence: ATTTTTTTGAATAAA
Position: -157
Score: 4.9 Sequence: AATTTTCTAATAATT
Position: -56
Score: 4.4 Sequence: ATTAATCTGATTATT
Locus tag: SSP1452
Name: glnR Funciton: HTH-type transcriptional regulator GlnR
Locus tag: SSP1451
Name: glnA Funciton: glutamine synthetase |
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glnR
|
HTH-type transcriptional regulator GlnR
|
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glnA
|
glutamine synthetase
|
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Position: -218
Score: 4.6 Sequence: ATTTTTCAGAATATA
Locus tag: SSP0353
Name: gabT Funciton: 4-aminobutyrate aminotransferase |
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gabT
|
4-aminobutyrate aminotransferase
|
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Position: -80
Score: 4.5 Sequence: TATTTTCAAATAATT
Locus tag: SSP2409
Name: cysH Funciton: 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase |
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cysH
|
3'-phosphoadenosine 5'-phosphosulfate sulfotransferase
|
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Position: -41
Score: 5.1 Sequence: AATTATCAGAAAATT
Position: -32
Score: 4.2 Sequence: AAAATTTAGAAATTA
Locus tag: SSP0251
Name: cysD Funciton: O-acetylhomoserine sulfhydrylase |
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cysD
|
O-acetylhomoserine sulfhydrylase
|
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Position: -186
Score: 4.6 Sequence: AATATTCAGACTTTT
Position: -92
Score: 4.5 Sequence: AAATTTATAAAAATT
Locus tag: SSP1755
Name: comK Funciton: competence transcription factor |
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comK
|
competence transcription factor
|
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Position: -125
Score: 4.5 Sequence: CATATTTAAAAAATT
Locus tag: SSP0060
Name: capA Funciton: capsular polysaccharide synthesis enzyme Cap5A
Locus tag: SSP0061
Name: capB Funciton: capsular polysaccharide synthesis enzyme Cap5B
Locus tag: SSP0062
Name: capC Funciton: capsular polysaccharide synthesis enzyme Cap8C
Locus tag: SSP0063
Name: capD Funciton: capsular polysaccharide synthesis enzyme Cap5D
Locus tag: SSP0064
Name: null Funciton: putative glycosyl transferase
Locus tag: SSP0065
Name: null Funciton: putative glycosyl transferase
Locus tag: SSP0066
Name: null Funciton: capsular polysaccharide synthesis protein
Locus tag: SSP0067
Name: null Funciton: putative glycosyl transferase
Locus tag: SSP0068
Name: null Funciton: putative UDP-glucose 6-dehydrogenase |
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capA
|
capsular polysaccharide synthesis enzyme Cap5A
|
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capB
|
capsular polysaccharide synthesis enzyme Cap5B
|
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capC
|
capsular polysaccharide synthesis enzyme Cap8C
|
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capD
|
capsular polysaccharide synthesis enzyme Cap5D
|
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|
putative glycosyl transferase
|
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|
putative glycosyl transferase
|
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|
capsular polysaccharide synthesis protein
|
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|
putative glycosyl transferase
|
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|
putative UDP-glucose 6-dehydrogenase
|
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Position: -112
Score: 4.3 Sequence: AATACTTTAAATATT
Position: -103
Score: 4.1 Sequence: AATATTATAAATTAT
Position: -94
Score: 4.5 Sequence: AATTATCTGACATTT
Locus tag: SSP2299
Name: brnQ2 Funciton: branched-chain amino acid transport system |
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brnQ2
|
branched-chain amino acid transport system
|
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Position: -95
Score: 4.5 Sequence: ATATTTTTAAATATT
Position: -86
Score: 5 Sequence: AATATTCTGAAATTT
Locus tag: SSP1343
Name: braB Funciton: branched-chain amino acid transport system |
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braB
|
branched-chain amino acid transport system
|
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |