Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of CodY in Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305

Properties
Regulator type: Transcription factor
TF locus tag: SSP1513
Regulator family: CodY
Regulation mode: repressor
Biological process: Amino acid metabolism
Effector: Branched-chain amino acids
Regulog: CodY - Staphylococcaceae
Statistics of regulated genes:
- Genes 105
- Operons 50
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 516 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -104
Score: 4.3
Sequence: ATAATTCAAAATAAT
Locus tag: SSP1542
Name: aur
Funciton: zinc metalloproteinase aureolysin
SSP1542
aur
zinc metalloproteinase aureolysin
Position: -63
Score: 4.2
Sequence: ATTATATTGAATATT
Locus tag: SSP0936
Name: artQ
Funciton: Arginine ABC transport system ArtQ
Locus tag: SSP0937
Name: artQ
Funciton: Arginine ABC transport system ArtQ
Locus tag: SSP0938
Name: artM
Funciton: Arginine ABC transport system ATP-binding protein ArtM
SSP0936
artQ
Arginine ABC transport system ArtQ
SSP0937
artQ
Arginine ABC transport system ArtQ
SSP0938
artM
Arginine ABC transport system ATP-binding protein ArtM
Position: -113
Score: 4.6
Sequence: ATTTTTATGAATATT
Locus tag: SSP1278
Name: aroC
Funciton: chorismate synthase
Locus tag: SSP1279
Name: aroB
Funciton: 3-dehydroquinate synthase
Locus tag: SSP1280
Name: aroA
Funciton: 5-enolpyruvylshikimate-3-phosphate synthase
Locus tag: SSP1281
Name: SA1296
Funciton: hypothetical protein
Locus tag: SSP1282
Name: SA1295
Funciton: hypothetical protein
Locus tag: SSP1283
Name: SA1294
Funciton: hypothetical protein
Locus tag: SSP1284
Name: SA1293
Funciton: hypothetical protein
SSP1278
aroC
chorismate synthase
SSP1279
aroB
3-dehydroquinate synthase
SSP1280
aroA
5-enolpyruvylshikimate-3-phosphate synthase
SSP1281
SA1296
hypothetical protein
SSP1282
SA1295
hypothetical protein
SSP1283
SA1294
hypothetical protein
SSP1284
SA1293
hypothetical protein
Position: -119
Score: 4.9
Sequence: AATTTTCAAAATAAT
Locus tag: SSP1029
Name: acuA
Funciton: acetoin utilization protein
Locus tag: SSP1028
Name: acuC
Funciton: acetoin utilization protein
SSP1029
acuA
acetoin utilization protein
SSP1028
acuC
acetoin utilization protein
Position: -75
Score: 4.9
Sequence: ATTATTTTGAAAATT
Locus tag: SSP1030
Name: acsA
Funciton: acetyl-CoA synthetase
SSP1030
acsA
acetyl-CoA synthetase
Position: -38
Score: 5.1
Sequence: ATTTTTCTGAAAATT
Locus tag: SSP2052
Name: yxjH
Funciton: putative methionine synthase II
SSP2052
yxjH
putative methionine synthase II
Position: -90
Score: 4.5
Sequence: AAAAATTAGAATATT
Position: -81
Score: 5.2
Sequence: AATATTTAGAAAATT
Locus tag: SSP0585
Name: yocS
Funciton: Uncharacterized sodium-dependent transporter yocS
SSP0585
yocS
Uncharacterized sodium-dependent transporter yocS
Position: -36
Score: 4.8
Sequence: ACTATTCTGAAAATT
Locus tag: SSP1387
Name: tyrA
Funciton: prephenate dehydrogenase
SSP1387
tyrA
prephenate dehydrogenase
Position: -118
Score: 4.1
Sequence: AAATAACAGAATATT
Position: -109
Score: 4.6
Sequence: AATATTCTCAATATT
Locus tag: SSP1991
Name: tppB
Funciton: di-tripepride ABC transporter
SSP1991
tppB
di-tripepride ABC transporter
Position: -35
Score: 4.7
Sequence: AATTTTCTGATTTTT
Locus tag: SSP1439
Name: thrA
Funciton: aspartokinase III
SSP1439
thrA
aspartokinase III
Position: -138
Score: 4.6
Sequence: AATTATCAGAAAATA
Locus tag: SSP2329
Name: tcyP
Funciton: L-cystine uptake protein tcyP
SSP2329
tcyP
L-cystine uptake protein tcyP
Position: -182
Score: 4.2
Sequence: AATTTTTAAAATTGT
Locus tag: SSP1203
Name: sodA
Funciton: superoxide dismutase SodA
SSP1203
sodA
superoxide dismutase SodA
Position: -98
Score: 5.3
Sequence: AATTTTCTGAATATT
Position: -89
Score: 4.3
Sequence: AATATTTAGATATAT
Locus tag: SSP0274
Name: SA2396
Funciton: putative amino acid transporter
SSP0274
SA2396
putative amino acid transporter
Position: -65
Score: 5.3
Sequence: AATATTCTGAAAATT
Position: -56
Score: 4.2
Sequence: AAAATTAAGAAAATA
Locus tag: SSP0292
Name: SA2357
Funciton: putative regulatory protein
SSP0292
SA2357
putative regulatory protein
Position: -75
Score: 4.9
Sequence: TATTTTCAGAATATT
Locus tag: SSP0435
Name: SA2261
Funciton: putative p-aminobenzoyl-glutamate transporter
SSP0435
SA2261
putative p-aminobenzoyl-glutamate transporter
Position: -165
Score: 4.9
Sequence: AATATTCTGAAAATA
Locus tag: SSP0436
Name: SA2260
Funciton: putative short chain dehydrogenase
SSP0436
SA2260
putative short chain dehydrogenase
Position: -88
Score: 4.4
Sequence: AATTGTTTAAATTTT
Position: -79
Score: 4.4
Sequence: AATTTTTTGAATTTA
Locus tag: SSP0591
Name: SA2109
Funciton: probable amino-acid or metabolite transporter
SSP0591
SA2109
probable amino-acid or metabolite transporter
Position: -55
Score: 4.9
Sequence: TATTTTCTGAAAATT
Locus tag: SSP1040
Name: SA1544
Funciton: putative phosphoserine transaminase
Locus tag: SSP1039
Name: serA
Funciton: D-3-phosphoglycerate dehydrogenase
SSP1040
SA1544
putative phosphoserine transaminase
SSP1039
serA
D-3-phosphoglycerate dehydrogenase
Position: -67
Score: 4.6
Sequence: AATATTTTGATAAAT
Locus tag: SSP1221
Name: SA1364
Funciton: putative sulfurtransferase
SSP1221
SA1364
putative sulfurtransferase
Position: -121
Score: 4.6
Sequence: ATTTATCAAAATATT
Locus tag: SSP1222
Name: SA1363
Funciton: Lipoate-protein ligase A
SSP1222
SA1363
Lipoate-protein ligase A
Position: -174
Score: 4.5
Sequence: AATTTTTATAAATTT
Position: -80
Score: 4.6
Sequence: AAAAGTCTGAATATT
Locus tag: SSP1756
Name: SA0883
Funciton: hypothetical protein
SSP1756
SA0883
hypothetical protein
Position: -190
Score: 5.1
Sequence: AATTTTCAGAAAAAT
Locus tag: SSP2051
Name: SA0626
Funciton: hypothetical protein
SSP2051
SA0626
hypothetical protein
Position: -166
Score: 4.8
Sequence: AAATTTCAGAATTTT
Locus tag: SSP2074
Name: SA0601
Funciton: hypothetical protein
SSP2074
SA0601
hypothetical protein
Position: -193
Score: 4.3
Sequence: AATAATTTAACTATT
Locus tag: SSP2331
Name: SA0367
Funciton: putative NADPH-flavin oxidoreductase
SSP2331
SA0367
putative NADPH-flavin oxidoreductase
Position: -127
Score: 4.6
Sequence: ACTTATCTGAAAATT
Locus tag: SSP2412
Name: SA0348
Funciton: putative transcriptional regulator
SSP2412
SA0348
putative transcriptional regulator
Position: -99
Score: 4.8
Sequence: ATTTATCAGAAAATT
Locus tag: SSP0460
Name: SA0165
Funciton: hypothetical protein
SSP0460
SA0165
hypothetical protein
Position: -111
Score: 4.4
Sequence: AATATTTAAACATTT
Locus tag: SSP1433
Name: rocC
Funciton: amino acid permease
SSP1433
rocC
amino acid permease
Position: -38
Score: 4.7
Sequence: ACTTTTTAGAAAATT
Position: -29
Score: 4.1
Sequence: AAAATTCAAAATTTA
Locus tag: SSP1675
Name: pycA
Funciton: pyruvate carboxylase
SSP1675
pycA
pyruvate carboxylase
Position: -56
Score: 4.8
Sequence: ATATTTCTGAATATT
Locus tag: SSP1794
Name: oppB
Funciton: oligopeptide ABC transporter permease protein OppB
Locus tag: SSP1793
Name: oppC
Funciton: oligopeptide ABC transporter permease protein OppC
Locus tag: SSP1792
Name: oppD
Funciton: oligopeptide ABC transporter ATP-binding protein OppD
Locus tag: SSP1791
Name: oppF
Funciton: oligopeptide ABC transporter ATP-binding protein OppF
Locus tag: SSP1790
Name: oppA
Funciton: oligopeptide ABC transporter OppA oligopeptide-binding protein
SSP1794
oppB
oligopeptide ABC transporter permease protein OppB
SSP1793
oppC
oligopeptide ABC transporter permease protein OppC
SSP1792
oppD
oligopeptide ABC transporter ATP-binding protein OppD
SSP1791
oppF
oligopeptide ABC transporter ATP-binding protein OppF
SSP1790
oppA
oligopeptide ABC transporter OppA oligopeptide-binding protein
Position: -203
Score: 4.3
Sequence: AATATTCTGATAAAA
Locus tag: SSP0294
Name: mtnE
Funciton: transaminase MtnE involved in methionine biosynthesis via salvage pathway
Locus tag: SSP0295
Name: ddh2
Funciton: D-lactate dehydrogenase
SSP0294
mtnE
transaminase MtnE involved in methionine biosynthesis via salvage pathway
SSP0295
ddh2
D-lactate dehydrogenase
Position: -230
Score: 4.8
Sequence: AATAATTAGAAAATT
Position: -221
Score: 4
Sequence: AAAATTATGATATTT
Locus tag: SSP0012
Name: metX
Funciton: homoserine-o-acetyltransferase
SSP0012
metX
homoserine-o-acetyltransferase
Position: -274
Score: 4.6
Sequence: ATTTGTTAGAAAATT
Position: -265
Score: 4.4
Sequence: AAAATTTAAAATAAT
Locus tag: SSP1866
Name: metN
Funciton: Methionine ABC transporter, ATP-binding protein
Locus tag: SSP1865
Name: metP
Funciton: Methionine ABC transporter, permease protein
Locus tag: SSP1864
Name: metQ
Funciton: Methionine ABC transporter, methionine-binding lipoprotein
SSP1866
metN
Methionine ABC transporter, ATP-binding protein
SSP1865
metP
Methionine ABC transporter, permease protein
SSP1864
metQ
Methionine ABC transporter, methionine-binding lipoprotein
Position: -502
Score: 4.6
Sequence: AATTTTCAGATAAGT
Locus tag: SSP2413
Name: metI
Funciton: cystathionine gamma-synthase
Locus tag: SSP2414
Name: metC
Funciton: cystathionine beta-lyase
Locus tag: SSP2415
Name: metF
Funciton: 5,10-methylenetetrahydrofolate reductase protein
Locus tag: SSP2416
Name: metE
Funciton: 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferase
Locus tag: SSP2417
Name: mdh
Funciton: hypothetical metal-dependent hydrolase
SSP2413
metI
cystathionine gamma-synthase
SSP2414
metC
cystathionine beta-lyase
SSP2415
metF
5,10-methylenetetrahydrofolate reductase protein
SSP2416
metE
5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferase
SSP2417
mdh
hypothetical metal-dependent hydrolase
Position: -350
Score: 4.5
Sequence: ATTTTTCAGTAAATT
Position: -341
Score: 4.3
Sequence: TAAATTTAAAAAATT
Locus tag: SSP1357
Name: lysC
Funciton: aspartokinase II
Locus tag: SSP1356
Name: asd
Funciton: aspartate semialdehyde dehydrogenase
Locus tag: SSP1355
Name: dapA
Funciton: dihydrodipicolinate synthase
Locus tag: SSP1354
Name: dapB
Funciton: dihydrodipicolinate reductase
Locus tag: SSP1353
Name: dapD
Funciton: tetrahydrodipicolinate acetyltransferase
SSP1357
lysC
aspartokinase II
SSP1356
asd
aspartate semialdehyde dehydrogenase
SSP1355
dapA
dihydrodipicolinate synthase
SSP1354
dapB
dihydrodipicolinate reductase
SSP1353
dapD
tetrahydrodipicolinate acetyltransferase
Position: -129
Score: 4.4
Sequence: AAATGTTTAAATATT
Locus tag: SSP1432
Name: katA
Funciton: catalase
SSP1432
katA
catalase
Position: -86
Score: 5.2
Sequence: AATTTTTTGAAAATT
Locus tag: SSP2163
Name: ilvE
Funciton: branched-chain amino acid aminotroansferase
SSP2163
ilvE
branched-chain amino acid aminotroansferase
Position: -323
Score: 4.2
Sequence: AATTGACAGAAAAAT
Position: -266
Score: 4
Sequence: ATTTATCAAATTTTT
Position: -258
Score: 4.7
Sequence: AATTTTTAGATATTT
Position: -249
Score: 4.1
Sequence: ATATTTCAAACAAAT
Locus tag: SSP0825
Name: ilvD
Funciton: dihydroxy-acid dehydratase
Locus tag: SSP0824
Name: ilvB
Funciton: acetolactate synthase large subunit
Locus tag: SSP0823
Name: ilvH
Funciton: acetolactate synthase small subunit
Locus tag: SSP0822
Name: ilvC
Funciton: alpha-keto-beta-hydroxylacil reductoisomerase
Locus tag: SSP0821
Name: leuA
Funciton: 2-isopropylmalate synthase
Locus tag: SSP0820
Name: leuB
Funciton: 3-isopropylmalate dehydrogenase
Locus tag: SSP0819
Name: leuC
Funciton: 3-isopropylmalate dehydratase large subunit
Locus tag: SSP0818
Name: leuD
Funciton: 3-isopropylmalate dehydratase small subunit
Locus tag: SSP0817
Name: ilvA
Funciton: thereonine dehydratase
SSP0825
ilvD
dihydroxy-acid dehydratase
SSP0824
ilvB
acetolactate synthase large subunit
SSP0823
ilvH
acetolactate synthase small subunit
SSP0822
ilvC
alpha-keto-beta-hydroxylacil reductoisomerase
SSP0821
leuA
2-isopropylmalate synthase
SSP0820
leuB
3-isopropylmalate dehydrogenase
SSP0819
leuC
3-isopropylmalate dehydratase large subunit
SSP0818
leuD
3-isopropylmalate dehydratase small subunit
SSP0817
ilvA
thereonine dehydratase
Position: -168
Score: 4.7
Sequence: AAAAATCAGAAAATT
Locus tag: SSP1438
Name: hom
Funciton: homoserine dehydrogenase
Locus tag: SSP1437
Name: thrC
Funciton: threonine synthase
Locus tag: SSP1436
Name: thrB
Funciton: homoserine kinase
Locus tag: SSP1435
Name: SA1167
Funciton: putative hydrolase of the HAD superfamily
SSP1438
hom
homoserine dehydrogenase
SSP1437
thrC
threonine synthase
SSP1436
thrB
homoserine kinase
SSP1435
SA1167
putative hydrolase of the HAD superfamily
Position: -190
Score: 4.1
Sequence: TATTTTTATAAATTT
Position: -181
Score: 4.6
Sequence: AAATTTCAGAAAATG
Locus tag: SSP0752
Name: hmrA
Funciton: N-acyl-L-amino acid amidohydrolase
Locus tag: SSP0753
Name: SA1934
Funciton: hypothetical protein
SSP0752
hmrA
N-acyl-L-amino acid amidohydrolase
SSP0753
SA1934
hypothetical protein
Position: -109
Score: 4.8
Sequence: CATTTTCAGAATATT
Locus tag: SSP0431
Name: hisZ
Funciton: ATP phosphoribosyltransferase regulatory subunit
Locus tag: SSP0430
Name: hisG
Funciton: ATP phosphoribosyltransferase
Locus tag: SSP0429
Name: hisD
Funciton: histidinol dehydrogenase
Locus tag: SSP0428
Name: hisC
Funciton: histidinol-phosphate aminotransferase
Locus tag: SSP0427
Name: hisB
Funciton: imidazoleglycerol-phosphate dehydratase
Locus tag: SSP0426
Name: hisH
Funciton: imidazole glycerol phosphate synthase glutamine amidotransferase subunit
Locus tag: SSP0425
Name: hisA
Funciton: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
Locus tag: SSP0424
Name: hisF
Funciton: imidazoleglycerol-phosphate synthase
Locus tag: SSP0423
Name: hisI
Funciton: histidine biosynthesis bifunctional protein HisIE
SSP0431
hisZ
ATP phosphoribosyltransferase regulatory subunit
SSP0430
hisG
ATP phosphoribosyltransferase
SSP0429
hisD
histidinol dehydrogenase
SSP0428
hisC
histidinol-phosphate aminotransferase
SSP0427
hisB
imidazoleglycerol-phosphate dehydratase
SSP0426
hisH
imidazole glycerol phosphate synthase glutamine amidotransferase subunit
SSP0425
hisA
phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
SSP0424
hisF
imidazoleglycerol-phosphate synthase
SSP0423
hisI
histidine biosynthesis bifunctional protein HisIE
Position: -118
Score: 5
Sequence: AAAATTCTGAAAATT
Locus tag: SSP2285
Name: gltC
Funciton: transcription activator of glutamate synthase operon
SSP2285
gltC
transcription activator of glutamate synthase operon
Position: -34
Score: 5
Sequence: AATTTTCAGAATTTT
Locus tag: SSP2284
Name: gltB
Funciton: glutamate synthase large subunit
Locus tag: SSP2283
Name: gltD
Funciton: NADPH-dependent glutamate synthase beta subunit
SSP2284
gltB
glutamate synthase large subunit
SSP2283
gltD
NADPH-dependent glutamate synthase beta subunit
Position: -179
Score: 4.2
Sequence: ATTTTTTTGAATAAA
Position: -157
Score: 4.9
Sequence: AATTTTCTAATAATT
Position: -56
Score: 4.4
Sequence: ATTAATCTGATTATT
Locus tag: SSP1452
Name: glnR
Funciton: HTH-type transcriptional regulator GlnR
Locus tag: SSP1451
Name: glnA
Funciton: glutamine synthetase
SSP1452
glnR
HTH-type transcriptional regulator GlnR
SSP1451
glnA
glutamine synthetase
Position: -218
Score: 4.6
Sequence: ATTTTTCAGAATATA
Locus tag: SSP0353
Name: gabT
Funciton: 4-aminobutyrate aminotransferase
SSP0353
gabT
4-aminobutyrate aminotransferase
Position: -80
Score: 4.5
Sequence: TATTTTCAAATAATT
Locus tag: SSP2409
Name: cysH
Funciton: 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase
SSP2409
cysH
3'-phosphoadenosine 5'-phosphosulfate sulfotransferase
Position: -41
Score: 5.1
Sequence: AATTATCAGAAAATT
Position: -32
Score: 4.2
Sequence: AAAATTTAGAAATTA
Locus tag: SSP0251
Name: cysD
Funciton: O-acetylhomoserine sulfhydrylase
SSP0251
cysD
O-acetylhomoserine sulfhydrylase
Position: -186
Score: 4.6
Sequence: AATATTCAGACTTTT
Position: -92
Score: 4.5
Sequence: AAATTTATAAAAATT
Locus tag: SSP1755
Name: comK
Funciton: competence transcription factor
SSP1755
comK
competence transcription factor
Position: -125
Score: 4.5
Sequence: CATATTTAAAAAATT
Locus tag: SSP0060
Name: capA
Funciton: capsular polysaccharide synthesis enzyme Cap5A
Locus tag: SSP0061
Name: capB
Funciton: capsular polysaccharide synthesis enzyme Cap5B
Locus tag: SSP0062
Name: capC
Funciton: capsular polysaccharide synthesis enzyme Cap8C
Locus tag: SSP0063
Name: capD
Funciton: capsular polysaccharide synthesis enzyme Cap5D
Locus tag: SSP0064
Name: null
Funciton: putative glycosyl transferase
Locus tag: SSP0065
Name: null
Funciton: putative glycosyl transferase
Locus tag: SSP0066
Name: null
Funciton: capsular polysaccharide synthesis protein
Locus tag: SSP0067
Name: null
Funciton: putative glycosyl transferase
Locus tag: SSP0068
Name: null
Funciton: putative UDP-glucose 6-dehydrogenase
SSP0060
capA
capsular polysaccharide synthesis enzyme Cap5A
SSP0061
capB
capsular polysaccharide synthesis enzyme Cap5B
SSP0062
capC
capsular polysaccharide synthesis enzyme Cap8C
SSP0063
capD
capsular polysaccharide synthesis enzyme Cap5D
SSP0064
putative glycosyl transferase
SSP0065
putative glycosyl transferase
SSP0066
capsular polysaccharide synthesis protein
SSP0067
putative glycosyl transferase
SSP0068
putative UDP-glucose 6-dehydrogenase
Position: -112
Score: 4.3
Sequence: AATACTTTAAATATT
Position: -103
Score: 4.1
Sequence: AATATTATAAATTAT
Position: -94
Score: 4.5
Sequence: AATTATCTGACATTT
Locus tag: SSP2299
Name: brnQ2
Funciton: branched-chain amino acid transport system
SSP2299
brnQ2
branched-chain amino acid transport system
Position: -95
Score: 4.5
Sequence: ATATTTTTAAATATT
Position: -86
Score: 5
Sequence: AATATTCTGAAATTT
Locus tag: SSP1343
Name: braB
Funciton: branched-chain amino acid transport system
SSP1343
braB
branched-chain amino acid transport system
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