Regulon of CodY in Staphylococcus epidermidis ATCC 12228
| Regulator type: | Transcription factor |
| TF locus tag: | SE0931 |
| Regulator family: | CodY |
| Regulation mode: | repressor |
| Biological process: | Amino acid metabolism |
| Effector: | Branched-chain amino acids |
| Regulog: | CodY - Staphylococcaceae |
| Statistics of regulated genes: | |
| - Genes | 114 |
| - Operons | 53 |
| Visualization: | |
|
Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Staphylococcaceae
- By TF family - CodY
- By effector - Branched-chain amino acids
- By pathway - Amino acid metabolism
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -80
Score: 4.1 Sequence: ATTTGTTTAACAATT
Locus tag: SE2018
Name: opuCA Funciton: glycine betaine/carnitine/choline ABC transporter opuCA
Locus tag: SE2017
Name: opuCB Funciton: glycine betaine/carnitine/choline ABC transporter opuCB
Locus tag: SE2016
Name: opuCC Funciton: glycine betaine/carnitine/choline ABC transporter opuCC
Locus tag: SE2015
Name: opuCD Funciton: glycine betaine/carnitine/choline ABC transporter opuCD |
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opuCA
|
glycine betaine/carnitine/choline ABC transporter opuCA
|
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opuCB
|
glycine betaine/carnitine/choline ABC transporter opuCB
|
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opuCC
|
glycine betaine/carnitine/choline ABC transporter opuCC
|
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opuCD
|
glycine betaine/carnitine/choline ABC transporter opuCD
|
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Position: -63
Score: 4.9 Sequence: ATATTTCTGAAAATT
Locus tag: SE0680
Name: oppB Funciton: oligopeptide ABC transporter permease protein OppB
Locus tag: SE0681
Name: oppC Funciton: oligopeptide transport system permease protein OppC
Locus tag: SE0682
Name: oppD Funciton: oligopeptide ABC transporter ATP-binding protein OppD
Locus tag: SE0683
Name: oppF Funciton: oligopeptide ABC transporter ATP-binding protein OppF
Locus tag: SE0684
Name: oppA Funciton: oligopeptide ABC transporter OppA oligopeptide-binding protein |
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oppB
|
oligopeptide ABC transporter permease protein OppB
|
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oppC
|
oligopeptide transport system permease protein OppC
|
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oppD
|
oligopeptide ABC transporter ATP-binding protein OppD
|
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oppF
|
oligopeptide ABC transporter ATP-binding protein OppF
|
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oppA
|
oligopeptide ABC transporter OppA oligopeptide-binding protein
|
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Position: -61
Score: 4.4 Sequence: TTATTTCAGAAAATT
Position: -52
Score: 4.5 Sequence: AAAATTCTAACTATT
Locus tag: SE2122
Name: mtnE Funciton: transaminase MtnE involved in methionine biosynthesis via salvage pathway
Locus tag: SE2121
Name: ddh2 Funciton: D-lactate dehydrogenase |
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mtnE
|
transaminase MtnE involved in methionine biosynthesis via salvage pathway
|
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ddh2
|
D-lactate dehydrogenase
|
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|
Position: -233
Score: 4.8 Sequence: AATAATTAGAAAATT
Position: -224
Score: 4.5 Sequence: AAAATTTAGACTATT
Locus tag: SE0011
Name: metX Funciton: homoserine-o-acetyltransferase |
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metX
|
homoserine-o-acetyltransferase
|
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Position: -303
Score: 4.2 Sequence: TATTATTAAAATATT
Position: -294
Score: 4.7 Sequence: AATATTTAAAATAAT
Locus tag: SE1902
Name: metT Funciton: methionine transporter MetT |
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metT
|
methionine transporter MetT
|
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|
Position: -275
Score: 4.6 Sequence: ATTTGTTAGAAAATT
Position: -266
Score: 4.4 Sequence: AAAATTTAAAATAAT
Locus tag: SE0600
Name: metN Funciton: Methionine ABC transporter, ATP-binding protein
Locus tag: SE0601
Name: metP Funciton: Methionine ABC transporter, permease protein
Locus tag: SE0602
Name: metQ Funciton: Methionine ABC transporter, methionine-binding lipoprotein |
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metN
|
Methionine ABC transporter, ATP-binding protein
|
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metP
|
Methionine ABC transporter, permease protein
|
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metQ
|
Methionine ABC transporter, methionine-binding lipoprotein
|
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|
Position: -533
Score: 5.1 Sequence: AATTTTCAGAAAAAT
Locus tag: SE2379
Name: metI Funciton: cystathionine gamma-synthase
Locus tag: SE2380
Name: metC Funciton: cystathionine beta-lyase
Locus tag: SE2381
Name: metF Funciton: 5,10-methylenetetrahydrofolate reductase protein
Locus tag: SE2382
Name: metE Funciton: 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferase
Locus tag: SE2383
Name: mdh Funciton: hypothetical metal-dependent hydrolase |
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metI
|
cystathionine gamma-synthase
|
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metC
|
cystathionine beta-lyase
|
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metF
|
5,10-methylenetetrahydrofolate reductase protein
|
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metE
|
5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferase
|
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mdh
|
hypothetical metal-dependent hydrolase
|
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Position: -46
Score: 5.2 Sequence: AATTTTCTAAAAATT
Locus tag: SE1074
Name: asd Funciton: aspartate semialdehyde dehydrogenase
Locus tag: SE1075
Name: dapA Funciton: dihydrodipicolinate synthase
Locus tag: SE1076
Name: dapB Funciton: dihydrodipicolinate reductase
Locus tag: SE1077
Name: dapD Funciton: tetrahydrodipicolinate acetyltransferase
Locus tag: SE1078
Name: ykuR Funciton: hippurate hydrolase
Locus tag: SE1079
Name: dapX Funciton: putative alanine racemase
Locus tag: SE1080
Name: lysA Funciton: diaminopimelate decarboxylase |
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asd
|
aspartate semialdehyde dehydrogenase
|
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dapA
|
dihydrodipicolinate synthase
|
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dapB
|
dihydrodipicolinate reductase
|
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dapD
|
tetrahydrodipicolinate acetyltransferase
|
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ykuR
|
hippurate hydrolase
|
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dapX
|
putative alanine racemase
|
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lysA
|
diaminopimelate decarboxylase
|
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Position: -149
Score: 5 Sequence: AATATTCAGAAATTT
Locus tag: SE0995
Name: ltaE Funciton: low specificity L-threonine aldolase |
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ltaE
|
low specificity L-threonine aldolase
|
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Position: -142
Score: 4.1 Sequence: AATTGTTAAATTTTT
Position: -133
Score: 4.6 Sequence: ATTTTTCTGATATTT
Locus tag: SE1016
Name: katA Funciton: catalase |
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katA
|
catalase
|
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Position: -99
Score: 4.1 Sequence: TCTATTTTGAATATT
Position: -90
Score: 5.2 Sequence: AATATTTAGAAAATT
Locus tag: SE0318
Name: ilvE Funciton: branched-chain amino acid aminotroansferase |
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ilvE
|
branched-chain amino acid aminotroansferase
|
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Position: -50
Score: 4.9 Sequence: ATTATTTTGAAAATT
Locus tag: SE1657
Name: ilvC Funciton: alpha-keto-beta-hydroxylacil reductoisomerase
Locus tag: SE1658
Name: leuA Funciton: 2-isopropylmalate synthase
Locus tag: SE1659
Name: leuB Funciton: 3-isopropylmalate dehydrogenase
Locus tag: SE1660
Name: leuC Funciton: 3-isopropylmalate dehydratase large subunit
Locus tag: SE1661
Name: leuD Funciton: 3-isopropylmalate dehydratase small subunit
Locus tag: SE1662
Name: ilvA Funciton: thereonine dehydratase |
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ilvC
|
alpha-keto-beta-hydroxylacil reductoisomerase
|
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leuA
|
2-isopropylmalate synthase
|
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leuB
|
3-isopropylmalate dehydrogenase
|
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leuC
|
3-isopropylmalate dehydratase large subunit
|
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leuD
|
3-isopropylmalate dehydratase small subunit
|
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ilvA
|
thereonine dehydratase
|
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Position: -330
Score: 5.2 Sequence: AATTTTTAGAAAATT
Position: -321
Score: 4.1 Sequence: AAAATTCTAAATTTA
Locus tag: SE1654
Name: ilvD Funciton: dihydroxy-acid dehydratase
Locus tag: SE1655
Name: ilvB Funciton: acetolactate synthase large subunit
Locus tag: SE1656
Name: ilvH Funciton: acetolactate synthase small subunit |
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ilvD
|
dihydroxy-acid dehydratase
|
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ilvB
|
acetolactate synthase large subunit
|
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ilvH
|
acetolactate synthase small subunit
|
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Position: -170
Score: 4.7 Sequence: AAAAATCAGAAAATT
Locus tag: SE1009
Name: hom Funciton: homoserine dehydrogenase
Locus tag: SE1010
Name: thrC Funciton: threonine synthase
Locus tag: SE1011
Name: thrB Funciton: homoserine kinase
Locus tag: SE1012
Name: SA1167 Funciton: putative hydrolase of the HAD superfamily |
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hom
|
homoserine dehydrogenase
|
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thrC
|
threonine synthase
|
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thrB
|
homoserine kinase
|
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SA1167
|
putative hydrolase of the HAD superfamily
|
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|
Position: -113
Score: 4.6 Sequence: AATTGTAAGAAAATT
Position: -102
Score: 4.2 Sequence: AATTGTGTAAAAATT
Locus tag: SE1731
Name: hmrA Funciton: N-acyl-L-amino acid amidohydrolase
Locus tag: SE1730
Name: SA1934 Funciton: hypothetical protein |
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hmrA
|
N-acyl-L-amino acid amidohydrolase
|
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SA1934
|
hypothetical protein
|
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|
Position: -115
Score: 5.1 Sequence: AATTTTCTGAAAAAT
Locus tag: SE0270
Name: hisZ Funciton: ATP phosphoribosyltransferase regulatory subunit
Locus tag: SE0271
Name: hisG Funciton: ATP phosphoribosyltransferase
Locus tag: SE0272
Name: hisD Funciton: histidinol dehydrogenase
Locus tag: SE0273
Name: hisB Funciton: imidazoleglycerol-phosphate dehydratase
Locus tag: SE0274
Name: hisH Funciton: imidazole glycerol phosphate synthase glutamine amidotransferase subunit
Locus tag: SE0275
Name: hisA Funciton: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
Locus tag: SE0276
Name: hisF Funciton: imidazoleglycerol-phosphate synthase
Locus tag: SE0277
Name: hisI Funciton: histidine biosynthesis bifunctional protein HisIE |
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hisZ
|
ATP phosphoribosyltransferase regulatory subunit
|
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hisG
|
ATP phosphoribosyltransferase
|
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hisD
|
histidinol dehydrogenase
|
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hisB
|
imidazoleglycerol-phosphate dehydratase
|
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hisH
|
imidazole glycerol phosphate synthase glutamine amidotransferase subunit
|
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hisA
|
phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
|
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hisF
|
imidazoleglycerol-phosphate synthase
|
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hisI
|
histidine biosynthesis bifunctional protein HisIE
|
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|
Position: -171
Score: 5 Sequence: AATTTTCTGACAATT
Locus tag: SE2313
Name: gltC Funciton: transcription activator of glutamate synthase operon |
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gltC
|
transcription activator of glutamate synthase operon
|
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|
Position: -35
Score: 5 Sequence: AATTGTCAGAAAATT
Locus tag: SE2312
Name: gltB Funciton: glutamate synthase large subunit
Locus tag: SE2311
Name: gltD Funciton: NNADPH-dependent glutamate synthase beta subunit |
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gltB
|
glutamate synthase large subunit
|
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gltD
|
NNADPH-dependent glutamate synthase beta subunit
|
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Position: -194
Score: 4.8 Sequence: AAATGTCTGAAAATT
Position: -185
Score: 4.7 Sequence: AAAATTTTAAAAATT
Locus tag: SE0986
Name: glnR Funciton: HTH-type transcriptional regulator GlnR
Locus tag: SE0987
Name: glnA Funciton: glutamine synthetase |
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glnR
|
HTH-type transcriptional regulator GlnR
|
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glnA
|
glutamine synthetase
|
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Position: -164
Score: 4.6 Sequence: AATATTCTAAATTAT
Position: -155
Score: 4.6 Sequence: AATTATCAGAAAATA
Locus tag: SE2148
Name: gabT Funciton: 4-aminobutyrate aminotransferase |
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gabT
|
4-aminobutyrate aminotransferase
|
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Position: -69
Score: 4.7 Sequence: ATTATTCTGACAATT
Locus tag: SE2181
Name: cysH Funciton: 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase |
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cysH
|
3'-phosphoadenosine 5'-phosphosulfate sulfotransferase
|
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|
Position: -147
Score: 4.7 Sequence: AATATTCTGACATTT
Locus tag: SE0731
Name: comK Funciton: competence transcription factor |
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comK
|
competence transcription factor
|
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Position: -173
Score: 4.4 Sequence: AATATTAAAAATTTT
Locus tag: SE0217
Name: brnQ1 Funciton: branched-chain amino acid transport system |
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brnQ1
|
branched-chain amino acid transport system
|
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Position: -87
Score: 5.1 Sequence: AATTTTCTGAAATTT
Locus tag: SE1090
Name: braB Funciton: branched-chain amino acid transport system |
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braB
|
branched-chain amino acid transport system
|
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Position: -69
Score: 4.9 Sequence: ACTTTTCAGAAAATT
Locus tag: SE2219
Name: aur Funciton: zinc metalloproteinase aureolysin |
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aur
|
zinc metalloproteinase aureolysin
|
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Position: -138
Score: 4 Sequence: TCTTTTTTAAATATT
Locus tag: SE1155
Name: aroC Funciton: chorismate synthase
Locus tag: SE1154
Name: aroB Funciton: 3-dehydroquinate synthase
Locus tag: SE1153
Name: aroA Funciton: 3-phosphoshikimate 1-carboxyvinyltransferase
Locus tag: SE1152
Name: SA1296 Funciton: hypothetical protein
Locus tag: SE1151
Name: SA1295 Funciton: hypothetical protein
Locus tag: SE1150
Name: SA1294 Funciton: hypothetical protein
Locus tag: SE1149
Name: null Funciton: hypothetical protein
Locus tag: SE1148
Name: SA1293 Funciton: hypothetical protein |
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aroC
|
chorismate synthase
|
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aroB
|
3-dehydroquinate synthase
|
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aroA
|
3-phosphoshikimate 1-carboxyvinyltransferase
|
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SA1296
|
hypothetical protein
|
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SA1295
|
hypothetical protein
|
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SA1294
|
hypothetical protein
|
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|
hypothetical protein
|
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SA1293
|
hypothetical protein
|
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Position: -180
Score: 4.5 Sequence: AATTTACAGAAATTT
Position: -171
Score: 4.3 Sequence: AAATTTTAAAATATA
Locus tag: SE0657
Name: argG Funciton: argininosuccinate synthase
Locus tag: SE0656
Name: argH Funciton: argininosuccinate lyase |
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argG
|
argininosuccinate synthase
|
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argH
|
argininosuccinate lyase
|
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Position: -93
Score: 4.9 Sequence: ATATTTCTGAAAATT
Locus tag: SE2004
Name: aapA Funciton: D-serine/D-alanine/glycine transporter |
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aapA
|
D-serine/D-alanine/glycine transporter
|
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|
Position: -251
Score: 4.4 Sequence: AATTATCTGATTTTT
Position: -242
Score: 4.6 Sequence: ATTTTTCTAATTATT
Position: -35
Score: 4.4 Sequence: GTTATTCTGAAAATT
Locus tag: SE1047
Name: tyrA Funciton: prephenate dehydrogenase |
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tyrA
|
prephenate dehydrogenase
|
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Position: -431
Score: 4.6 Sequence: AATAATTAGAAAAAT
Position: -422
Score: 4.4 Sequence: AAAAATCAGATAATT
Locus tag: SE1048
Name: trpE Funciton: anthranilate synthase component I
Locus tag: SE1049
Name: trpG Funciton: anthranilate synthase component II
Locus tag: SE1050
Name: trpD Funciton: anthranilate phosphoribosyltransferase
Locus tag: SE1051
Name: trpC Funciton: indole-3-glycerol phosphate synthase
Locus tag: SE1052
Name: trpF Funciton: phosphoriborylanthranilate isomerase
Locus tag: SE1053
Name: trpB Funciton: tryptophan synthase beta subunit
Locus tag: SE1054
Name: trpA Funciton: tryptophan synthase alpha subunit |
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trpE
|
anthranilate synthase component I
|
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trpG
|
anthranilate synthase component II
|
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trpD
|
anthranilate phosphoribosyltransferase
|
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trpC
|
indole-3-glycerol phosphate synthase
|
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trpF
|
phosphoriborylanthranilate isomerase
|
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trpB
|
tryptophan synthase beta subunit
|
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trpA
|
tryptophan synthase alpha subunit
|
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Position: -107
Score: 4 Sequence: CTTTTTTTAAATTTT
Position: -98
Score: 5.2 Sequence: AATTTTTTGAAAATT
Locus tag: SE0509
Name: tppB Funciton: di-tripepride ABC transporter |
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tppB
|
di-tripepride ABC transporter
|
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Position: -33
Score: 4.7 Sequence: AATTTTCTGATTTTT
Locus tag: SE1008
Name: thrA Funciton: aspartokinase III |
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thrA
|
aspartokinase III
|
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Position: -101
Score: 4.4 Sequence: AATAATTTAATAATT
Locus tag: SE1240
Name: sodA Funciton: superoxide dismutase SodA |
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sodA
|
superoxide dismutase SodA
|
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|
Position: -32
Score: 5.1 Sequence: AATTTTCAGATAATT
Locus tag: SE2356
Name: SE2356 Funciton: 2-oxo-hepta-3-ene-1,7-dioate hydratase |
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SE2356
|
2-oxo-hepta-3-ene-1,7-dioate hydratase
|
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|
Position: -179
Score: 5 Sequence: AAATTTCTGAATATT
Locus tag: SE0996
Name: SAS040 Funciton: conserved hypothetical protein
Locus tag: SE0997
Name: SA1155 Funciton: putative cardiolipin synthetase |
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SAS040
|
conserved hypothetical protein
|
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|
SA1155
|
putative cardiolipin synthetase
|
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Position: -139
Score: 4.8 Sequence: AATTTTAAAAAAATT
Locus tag: SE0357
Name: SE0357 Funciton: hypothetical protein
Locus tag: SE0356
Name: SE0356 Funciton: hypothetical protein |
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SE0357
|
hypothetical protein
|
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|
SE0356
|
hypothetical protein
|
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|
Position: -125
Score: 4.6 Sequence: TATTTTCTGATAATT
Position: -116
Score: 4.6 Sequence: ATAATTTAGAATATT
Locus tag: SE2150
Name: SA2398 Funciton: hypothetical protein |
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SA2398
|
hypothetical protein
|
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|
Position: -165
Score: 4.8 Sequence: ATTTTTCAGAATTTT
Position: -156
Score: 4.2 Sequence: AATTTTTAGACAAAA
Locus tag: SE2147
Name: SA2396 Funciton: putative amino acid transporter |
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SA2396
|
putative amino acid transporter
|
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|
Position: -172
Score: 5.1 Sequence: AATTTTCAGAAAAAT
Locus tag: SE2129
Name: SA2357 Funciton: putative regulatory protein |
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SA2357
|
putative regulatory protein
|
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|
Position: -218
Score: 4.6 Sequence: ATTTTTCTGAAATAT
Locus tag: SE2032
Name: SA2260 Funciton: putative short chain dehydrogenase |
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SA2260
|
putative short chain dehydrogenase
|
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|
Position: -246
Score: 5.2 Sequence: AATTTTCTAAAAATT
Locus tag: SE2010
Name: SA2233 Funciton: integral membrane efflux protein |
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SA2233
|
integral membrane efflux protein
|
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|
Position: -98
Score: 4.4 Sequence: AATTGTAAAAATATT
Locus tag: SE1892
Name: SA2109 Funciton: probable amino-acid or metabolite transporter |
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|
SA2109
|
probable amino-acid or metabolite transporter
|
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|
Position: -54
Score: 5 Sequence: AATATTCAGAATTTT
Locus tag: SE1400
Name: SA1544 Funciton: putative phosphoserine transaminase
Locus tag: SE1401
Name: serA Funciton: D-3-phosphoglycerate dehydrogenase |
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|
SA1544
|
putative phosphoserine transaminase
|
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|
serA
|
D-3-phosphoglycerate dehydrogenase
|
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|
Position: -66
Score: 4.6 Sequence: AATATTTTGATAAAT
Locus tag: SE1218
Name: SA1364 Funciton: putative sulfurtransferase |
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|
SA1364
|
putative sulfurtransferase
|
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|
Position: -108
Score: 4.6 Sequence: ATTTATCAAAATATT
Locus tag: SE1217
Name: SA1363 Funciton: Lipoate-protein ligase A |
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|
SA1363
|
Lipoate-protein ligase A
|
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|
Position: -82
Score: 4.7 Sequence: AAATGTCAGAATATT
Locus tag: SE0729
Name: SA0883 Funciton: hypothetical protein |
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|
SA0883
|
hypothetical protein
|
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|
Position: -206
Score: 5 Sequence: AAAATTCAGAATATT
Position: -197
Score: 4.1 Sequence: AATATTTAAATTTAT
Locus tag: SE0420
Name: SA0601 Funciton: hypothetical protein |
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|
SA0601
|
hypothetical protein
|
||
|
Position: -114
Score: 5.1 Sequence: AATTATCTGAAAATT
Locus tag: SE2355
Name: SA0367 Funciton: putative NADPH-flavin oxidoreductase |
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|
SA0367
|
putative NADPH-flavin oxidoreductase
|
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|
Position: -210
Score: 5.1 Sequence: ATTTTTCTGAAAATT
Locus tag: SE2378
Name: SA0348 Funciton: putative transcriptional regulator |
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|
SA0348
|
putative transcriptional regulator
|
||
|
Position: -112
Score: 4.6 Sequence: AAATATCAGAAAAAT
Position: -103
Score: 4.1 Sequence: AAAAATTTAACAATT
Locus tag: SE1015
Name: rocC Funciton: amino acid permease |
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|
rocC
|
amino acid permease
|
||
|
Position: -40
Score: 4.1 Sequence: TATTATCTAATTATT
Position: -31
Score: 4.9 Sequence: ATTATTTAGAAAATT
Locus tag: SE0813
Name: pycA Funciton: pyruvate carboxylase |
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|
pycA
|
pyruvate carboxylase
|
||
|
Position: -59
Score: 4.1 Sequence: ACTATTTAAACAATT
Locus tag: SE0747
Name: patA Funciton: putative aminotransferase A |
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|
patA
|
putative aminotransferase A
|
||
|
Position: -43
Score: 4 Sequence: TATTTTTTAACAAAT
Locus tag: SE0222
Name: opuCA Funciton: glycine betaine/carnitine/choline ABC transporter opuCA
Locus tag: SE0223
Name: opuCB Funciton: glycine betaine/carnitine/choline ABC transporter opuCB
Locus tag: SE0224
Name: opuCC Funciton: glycine betaine/carnitine/choline ABC transporter opuCC
Locus tag: SE0225
Name: opuCD Funciton: glycine betaine/carnitine/choline ABC transporter opuCD
Locus tag: SE0226
Name: SE0226 Funciton: putative esterase |
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opuCA
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glycine betaine/carnitine/choline ABC transporter opuCA
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opuCB
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glycine betaine/carnitine/choline ABC transporter opuCB
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opuCC
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glycine betaine/carnitine/choline ABC transporter opuCC
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opuCD
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glycine betaine/carnitine/choline ABC transporter opuCD
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SE0226
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putative esterase
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |