Regulon of CcpA in Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305

Properties
Regulator type:	Transcription factor
TF locus tag:	SSP1027
Regulator family:	LacI
Regulation mode:	repressor (activator)
Biological process:	Carbon catabolism
Effector:	HPr, phosphocarrier protein; Fructose-1,6-diphosphate
Regulog:	CcpA - Staphylococcaceae
Statistics of regulated genes:
- Genes	100
- Operons	64
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 391 sites [see more]

Member of regulog collections

By taxonomy - Staphylococcaceae
By trascription factor - CcpA
By TF family - LacI
By effector - HPr, phosphocarrier protein
By effector - Fructose-1,6-diphosphate
By pathway - Carbon catabolism

Regulated operons
	Locus Tag	Name	Function
Position: -124 Score: 4 Sequence: ATGAAAACGCTTTACC Locus tag: SSP1869 Name: yusH Funciton: hypothetical protein
	SSP1869	yusH	hypothetical protein
Position: -176 Score: 4.5 Sequence: AAGAAAACGCTTTCCT Position: -65 Score: 5 Sequence: ATGTAAGCGTTTACTA Locus tag: SSP2179 Name: xltD Funciton: Xylitol dehydrogenase Locus tag: SSP2180 Name: xltT Funciton: Ribitol/Xylitol/Arabitol transporter, MFS superfamily Locus tag: SSP2181 Name: xltR Funciton: predicted transcriptional regulator for xylitol utilization
	SSP2179	xltD	Xylitol dehydrogenase
	SSP2180	xltT	Ribitol/Xylitol/Arabitol transporter, MFS superfamily
	SSP2181	xltR	predicted transcriptional regulator for xylitol utilization
Position: -81 Score: 4.9 Sequence: ATGAAAACCTTTACAA Locus tag: SSP2282 Name: treP Funciton: phosphotransferase system trehalose-specific enzyme IIBC component homolog Locus tag: SSP2281 Name: treA Funciton: trehalose-6-phosphate hydrolase Locus tag: SSP2280 Name: treR Funciton: trehalose-6-phosphate-responsive transcriptional regulator
	SSP2282	treP	phosphotransferase system trehalose-specific enzyme IIBC component homolog
	SSP2281	treA	trehalose-6-phosphate hydrolase
	SSP2280	treR	trehalose-6-phosphate-responsive transcriptional regulator
Position: -44 Score: 5 Sequence: TTGAAAGCGATTACAA Locus tag: SSP1332 Name: SSP1332 Funciton: hypothetical protein
	SSP1332	SSP1332	hypothetical protein
Position: -37 Score: 5 Sequence: ATGAAAGCGCATACAT Locus tag: SSP0617 Name: null Funciton: putative regulatory protein
	SSP0617		putative regulatory protein
Position: -151 Score: 5 Sequence: TAGAAAACGCTTTCAT Locus tag: SSP0523 Name: SSP0523 Funciton: putative regulatory protein (DeoR family)
	SSP0523	SSP0523	putative regulatory protein (DeoR family)
Position: -158 Score: 4 Sequence: TATAAAACGATATCAT Position: -40 Score: 5 Sequence: TAGAAAGCGTTTACAA Locus tag: SSP0245 Name: null Funciton: putative truncated transcriptional antiterminator
	SSP0245		putative truncated transcriptional antiterminator
Position: -79 Score: 4.9 Sequence: ATGAATGCGTTTACAA Locus tag: SSP0230 Name: null Funciton: L-lactate permease paralog
	SSP0230		L-lactate permease paralog
Position: -72 Score: 4.9 Sequence: TTGATAGCGTTTTCAT Locus tag: SSP0206 Name: SSP0206 Funciton: putative truncated permease of the major facilitator superfamily Locus tag: SSP0207 Name: SSP0207 Funciton: major facilitator family sugar transporter
	SSP0206	SSP0206	putative truncated permease of the major facilitator superfamily
	SSP0207	SSP0207	major facilitator family sugar transporter
Position: -65 Score: 5 Sequence: TTGTAAGCGCTTACTA Locus tag: SSP0114 Name: null Funciton: putative oxidoreductase
	SSP0114		putative oxidoreductase
Position: -56 Score: 5.2 Sequence: TTGTAAACGTTTACAA Locus tag: SSP0236 Name: SH0372 Funciton: hypothetical Zn-dependent hydrolase Locus tag: SSP0237 Name: adhC Funciton: Zn-dependent alcohol dehydrogenase, class III
	SSP0236	SH0372	hypothetical Zn-dependent hydrolase
	SSP0237	adhC	Zn-dependent alcohol dehydrogenase, class III
Position: -318 Score: 4.1 Sequence: AGTAAAGCGTTTTCTA Locus tag: SSP0538 Name: SE1944 Funciton: putative glycosyltransferase
	SSP0538	SE1944	putative glycosyltransferase
Position: -47 Score: 4.7 Sequence: ATGAAAGCGTATACTT Locus tag: SSP0532 Name: SE0247 Funciton: putative permease of the major facilitator superfamily
	SSP0532	SE0247	putative permease of the major facilitator superfamily
Position: -232 Score: 4.7 Sequence: ATGGAAGCGTTTTCTA Locus tag: SSP1648 Name: sdhC Funciton: succinate dehydrogenase cytochrome b subunit Locus tag: SSP1647 Name: sdhA Funciton: succinate dehydrogenase flavoprotein subunit Locus tag: SSP1646 Name: sdhB Funciton: succinate dehydrogenase iron-sulfur protein subunit
	SSP1648	sdhC	succinate dehydrogenase cytochrome b subunit
	SSP1647	sdhA	succinate dehydrogenase flavoprotein subunit
	SSP1646	sdhB	succinate dehydrogenase iron-sulfur protein subunit
Position: -100 Score: 4.6 Sequence: ATGTAAACGATTTAAA Locus tag: SSP0875 Name: sdcS Funciton: sodium-dependent dicarboxylate transporter
	SSP0875	sdcS	sodium-dependent dicarboxylate transporter
Position: -68 Score: 4.4 Sequence: TTTAAAGCGATTCCAT Locus tag: SSP0836 Name: null Funciton: sucrose operon repressor
	SSP0836		sucrose operon repressor
Position: -66 Score: 4.4 Sequence: TTGGAACCGGTTACAA Locus tag: SSP0512 Name: scrA Funciton: PTS system sucrose-specific IIBC component
	SSP0512	scrA	PTS system sucrose-specific IIBC component
Position: -64 Score: 4.6 Sequence: TTGAAAACGATTGCAA Locus tag: SSP0714 Name: SAS074 Funciton: hypothetical protein
	SSP0714	SAS074	hypothetical protein
Position: -114 Score: 5 Sequence: ATGTAAACCCTTACAT Locus tag: SSP0591 Name: SA2109 Funciton: probable amino-acid or metabolite transporter
	SSP0591	SA2109	probable amino-acid or metabolite transporter
Position: -109 Score: 5.1 Sequence: ATGTAAGCGTTTTCTT Locus tag: SSP0598 Name: SA2105 Funciton: hypothetical protein
	SSP0598	SA2105	hypothetical protein
Position: -128 Score: 4.6 Sequence: TTGCAATCGTTTTCAA Locus tag: SSP0715 Name: SA1975 Funciton: predicted membrane-bound hydrolase Locus tag: SSP0716 Name: SA1974 Funciton: UDP-N-acetylglucosamine pyrophosphorylase Locus tag: SSP0717 Name: SA1973 Funciton: hemolysin III
	SSP0715	SA1975	predicted membrane-bound hydrolase
	SSP0716	SA1974	UDP-N-acetylglucosamine pyrophosphorylase
	SSP0717	SA1973	hemolysin III
Position: -33 Score: 4.7 Sequence: TTGGAAACGCTTACTT Locus tag: SSP1440 Name: SA1162 Funciton: hypothetical protein
	SSP1440	SA1162	hypothetical protein
Position: -164 Score: 4.3 Sequence: TTGAAATCGCAATCAA Position: -98 Score: 3.9 Sequence: AATAAAGCGTTTTTAT Locus tag: SSP2164 Name: SA0511 Funciton: uncharacterized epimerase/dehydratase
	SSP2164	SA0511	uncharacterized epimerase/dehydratase
Position: -36 Score: 4.6 Sequence: ATGTAAGCGCAATCAT Locus tag: SSP2425 Name: SA0225 Funciton: short-chain acyl-CoA oxidase Locus tag: SSP2424 Name: fadN Funciton: putative 3-hydroxyacyl-CoA dehydrogenase Locus tag: SSP2423 Name: fadA Funciton: putative acetyl-CoA acetyltransferase
	SSP2425	SA0225	short-chain acyl-CoA oxidase
	SSP2424	fadN	putative 3-hydroxyacyl-CoA dehydrogenase
	SSP2423	fadA	putative acetyl-CoA acetyltransferase
Position: -35 Score: 4.2 Sequence: ATGAAACCGATTACAG Locus tag: SSP0596 Name: SA0184 Funciton: hypothetical protein Locus tag: SSP0595 Name: murQ Funciton: N-acetylmuramic acid 6-phosphate etherase Locus tag: SSP0594 Name: murT Funciton: predicted N-acetylmuramate PTS system, IIBC components Locus tag: SSP0593 Name: murR Funciton: predicted N-acetylmuramate-6-phosphate-responsive transcriptional regulator, RpiR family
	SSP0596	SA0184	hypothetical protein
	SSP0595	murQ	N-acetylmuramic acid 6-phosphate etherase
	SSP0594	murT	predicted N-acetylmuramate PTS system, IIBC components
	SSP0593	murR	predicted N-acetylmuramate-6-phosphate-responsive transcriptional regulator, RpiR family
Position: -101 Score: 4.7 Sequence: ATGTAAGCGATTGCAT Locus tag: SSP0311 Name: rocA Funciton: 1-pyrroline-5-carboxylate dehydrogenase
	SSP0311	rocA	1-pyrroline-5-carboxylate dehydrogenase
Position: -198 Score: 5 Sequence: ATGTAAGGGCTTACAT Locus tag: SSP1818 Name: rocD Funciton: ornithine aminotransferase
	SSP1818	rocD	ornithine aminotransferase
Position: -33 Score: 4.4 Sequence: ATGTAACGGGTTACAT Locus tag: SSP1395 Name: rbsD Funciton: ribose ABC transporter permease protein Locus tag: SSP1394 Name: rbsA Funciton: ribose ABC transporter ATP-binding protein Locus tag: SSP1393 Name: rbsC Funciton: ribose ABC transporter permease Locus tag: SSP1392 Name: rbsB Funciton: ribose ABC transporter (ribose-binding protein)
	SSP1395	rbsD	ribose ABC transporter permease protein
	SSP1394	rbsA	ribose ABC transporter ATP-binding protein
	SSP1393	rbsC	ribose ABC transporter permease
	SSP1392	rbsB	ribose ABC transporter (ribose-binding protein)
Position: -302 Score: 5 Sequence: TAGAAAACGCTTTCAA Position: -30 Score: 5 Sequence: ATGAAAACGGTTACAT Locus tag: SSP1396 Name: rbsR2 Funciton: transcriptional repressor of ribose operon
	SSP1396	rbsR2	transcriptional repressor of ribose operon
Position: -137 Score: 4.1 Sequence: ATGGAAGCGCTTAACA Locus tag: SSP0889 Name: putP Funciton: high affinity proline permease
	SSP0889	putP	high affinity proline permease
Position: -80 Score: 5 Sequence: TTGTAAACGATTTCAT Locus tag: SSP0999 Name: putA Funciton: proline dehydrogenase
	SSP0999	putA	proline dehydrogenase
Position: -86 Score: 4.1 Sequence: AGTAAATCGTTTACAT Locus tag: SSP1037 Name: ptaA Funciton: PTS system N-acetylglucosamine-specific IIBC component Locus tag: SSP1038 Name: SE1402 Funciton: hypothetical hydrolase
	SSP1037	ptaA	PTS system N-acetylglucosamine-specific IIBC component
	SSP1038	SE1402	hypothetical hydrolase
Position: -148 Score: 4.8 Sequence: TTTAAAACGTTTACAT Locus tag: SSP1068 Name: pfkA Funciton: 6-phosphofructokinase Locus tag: SSP1069 Name: pykA Funciton: pyruvate kinase
	SSP1068	pfkA	6-phosphofructokinase
	SSP1069	pykA	pyruvate kinase
Position: -43 Score: 4.9 Sequence: TTGTAAAGGCTTACAT Locus tag: SSP0975 Name: pckA Funciton: phosphoenolpyruvate carboxykinase
	SSP0975	pckA	phosphoenolpyruvate carboxykinase
Position: -65 Score: 4.2 Sequence: ATGTAAGTGCTATCAA Locus tag: SSP2235 Name: nupC Funciton: pyrimidine nucleoside transporter
	SSP2235	nupC	pyrimidine nucleoside transporter
Position: -157 Score: 4.6 Sequence: TTGTAAACGCTACCAT Locus tag: SSP0374 Name: nanK Funciton: predicted N-acetyl-D-mannosamine kinase, ROK family
	SSP0374	nanK	predicted N-acetyl-D-mannosamine kinase, ROK family
Position: -182 Score: 4.6 Sequence: ATGGTAGCGTTTACAA Locus tag: SSP0375 Name: nanA Funciton: N-acetylneuraminate lyase Locus tag: SSP0376 Name: nanT Funciton: predicted sialic acid transporter
	SSP0375	nanA	N-acetylneuraminate lyase
	SSP0376	nanT	predicted sialic acid transporter
Position: -90 Score: 4.1 Sequence: TAGAAAACGCTTTACT Locus tag: SSP0539 Name: mqo Funciton: malate:quinone oxidoreductase
	SSP0539	mqo	malate:quinone oxidoreductase
Position: -145 Score: 5.1 Sequence: ATGTAAGCGTTTTCTT Locus tag: SSP2297 Name: lip Funciton: triacylglycerol lipase precursor
	SSP2297	lip	triacylglycerol lipase precursor
Position: -100 Score: 4.8 Sequence: TAGAAAACGCTTTCTA Locus tag: SSP2205 Name: kbl Funciton: 2-amino-3-ketobutyrate coenzyme A ligase
	SSP2205	kbl	2-amino-3-ketobutyrate coenzyme A ligase
Position: -56 Score: 4.3 Sequence: ATGTAAGCGTATACTC Locus tag: SSP0008 Name: hutH Funciton: histidine ammonia-lyase
	SSP0008	hutH	histidine ammonia-lyase
Position: -37 Score: 5 Sequence: ATGAAAGCGTTTTCTA Locus tag: SSP0524 Name: gutB Funciton: putative dehydrogenase Locus tag: SSP0525 Name: dhaK Funciton: PTS-dependent dihydroxyacetone kinase, dihydroxyacetone-binding subunit dhaK Locus tag: SSP0526 Name: dhaL Funciton: PTS-dependent dihydroxyacetone kinase, ADP-binding subunit dhaL Locus tag: SSP0527 Name: rpiB Funciton: putative ribose 5-phosphate isomerase
	SSP0524	gutB	putative dehydrogenase
	SSP0525	dhaK	PTS-dependent dihydroxyacetone kinase, dihydroxyacetone-binding subunit dhaK
	SSP0526	dhaL	PTS-dependent dihydroxyacetone kinase, ADP-binding subunit dhaL
	SSP0527	rpiB	putative ribose 5-phosphate isomerase
Position: -112 Score: 4.8 Sequence: ATGAAATCGTTTTCTT Locus tag: SSP0231 Name: csbX Funciton: putative alpha-ketoglutarate permease
	SSP0231	csbX	putative alpha-ketoglutarate permease
Position: -86 Score: 5.1 Sequence: TTGTAAGCGATTTCAT Locus tag: SSP0401 Name: gudP Funciton: glucarate transporter
	SSP0401	gudP	glucarate transporter
Position: -83 Score: 4.6 Sequence: TTGCAAGCGCTTGCAA Locus tag: SSP0410 Name: gntR Funciton: gluconate operon transcriptional repressor Locus tag: SSP0411 Name: gntK Funciton: gluconokinase Locus tag: SSP0412 Name: gntP Funciton: gluconate permease
	SSP0410	gntR	gluconate operon transcriptional repressor
	SSP0411	gntK	gluconokinase
	SSP0412	gntP	gluconate permease
Position: -113 Score: 4.8 Sequence: AAGGAAACGCTTACAT Locus tag: SSP0582 Name: glvR Funciton: transcriptional regulator of maltose utilization, RpiR family
	SSP0582	glvR	transcriptional regulator of maltose utilization, RpiR family
Position: -117 Score: 4.8 Sequence: ATGTAAGCGTTTCCTT Locus tag: SSP0583 Name: glvC Funciton: maltose-specific enzyme IICB of PTS system
	SSP0583	glvC	maltose-specific enzyme IICB of PTS system
Position: -74 Score: 5 Sequence: TTGTAAACGTTTACTT Locus tag: SSP0557 Name: gltS Funciton: sodium/glutamate symporter
	SSP0557	gltS	sodium/glutamate symporter
Position: -28 Score: 5 Sequence: ATGAAATCGTTTACAA Locus tag: SSP0178 Name: glpK Funciton: glycerate kinase
	SSP0178	glpK	glycerate kinase
Position: -145 Score: 4.7 Sequence: TTGACAACGCTTACAA Locus tag: SSP1461 Name: glpF Funciton: glycerol uptake facilitator Locus tag: SSP1460 Name: glpK Funciton: glycerol kinase Locus tag: SSP1459 Name: glpD Funciton: aerobic glycerol-3-phosphate dehydrogenase
	SSP1461	glpF	glycerol uptake facilitator
	SSP1460	glpK	glycerol kinase
	SSP1459	glpD	aerobic glycerol-3-phosphate dehydrogenase
Position: -44 Score: 4.3 Sequence: AAGAAAGCGTAAACAT Locus tag: SSP2019 Name: fruR Funciton: transcription repressor of fructose operon, DeoR family Locus tag: SSP2018 Name: fruB Funciton: fructose 1-phosphate kinase Locus tag: SSP2017 Name: fruA Funciton: PTS system fructose-specific IIABC component
	SSP2019	fruR	transcription repressor of fructose operon, DeoR family
	SSP2018	fruB	fructose 1-phosphate kinase
	SSP2017	fruA	PTS system fructose-specific IIABC component
Position: -147 Score: 4.4 Sequence: TTGAAAGCGCTATCTC Locus tag: SSP1031 Name: fhs Funciton: formyltetrahydrofolate synthetase Locus tag: SSP1032 Name: fhs Funciton: formyltetrahydrofolate synthetase
	SSP1031	fhs	formyltetrahydrofolate synthetase
	SSP1032	fhs	formyltetrahydrofolate synthetase
Position: -101 Score: 4.6 Sequence: ATAAAAACGCTTACAA Locus tag: SSP0759 Name: fbaA Funciton: fructose-bisphosphate aldolase
	SSP0759	fbaA	fructose-bisphosphate aldolase
Position: -91 Score: 5 Sequence: ATGTAAGGGCTTACAT Locus tag: SSP2427 Name: fadX Funciton: putative acetyl-CoA transferase Locus tag: SSP2426 Name: fadE Funciton: putative acyl-CoA synthetase
	SSP2427	fadX	putative acetyl-CoA transferase
	SSP2426	fadE	putative acyl-CoA synthetase
Position: -57 Score: 4.3 Sequence: ATGAAAGGCTTTGCAT Locus tag: SSP0327 Name: drp35 Funciton: lactonase Drp35
	SSP0327	drp35	lactonase Drp35
Position: -67 Score: 4.2 Sequence: ATATTAGCGTTTACAT Locus tag: SSP2070 Name: dhaK Funciton: dihydroxyacetone kinase, DhaK subunit Locus tag: SSP2069 Name: dhaL Funciton: dihydroxyacetone kinase, DhaL subunit Locus tag: SSP2068 Name: SA0607 Funciton: hypothetical protein
	SSP2070	dhaK	dihydroxyacetone kinase, DhaK subunit
	SSP2069	dhaL	dihydroxyacetone kinase, DhaL subunit
	SSP2068	SA0607	hypothetical protein
Position: -39 Score: 5 Sequence: AAGAAAACGCTTTCAA Locus tag: SSP2440 Name: cstA Funciton: carbon starvation protein CstA
	SSP2440	cstA	carbon starvation protein CstA
Position: -42 Score: 4.8 Sequence: ATGAAAGCCATTTCAT Locus tag: SSP1071 Name: citZ Funciton: citrate synthase Locus tag: SSP1072 Name: citC Funciton: isocitrate dehydrogenase
	SSP1071	citZ	citrate synthase
	SSP1072	citC	isocitrate dehydrogenase
Position: -26 Score: 4.8 Sequence: AAGAAATCGTTTTCAA Locus tag: SSP1027 Name: ccpA Funciton: catabolite control protein A
	SSP1027	ccpA	catabolite control protein A
Position: -73 Score: 4.3 Sequence: ATGTAAGCACTATCAT Locus tag: SSP0563 Name: araB2 Funciton: putative L-ribulokinase
	SSP0563	araB2	putative L-ribulokinase
Position: -149 Score: 5 Sequence: TAGTAAACGCTTACAT Position: -38 Score: 4.5 Sequence: AGGAAAGCGTTTTCTT Locus tag: SSP2178 Name: araB Funciton: putative L-ribulokinase
	SSP2178	araB	putative L-ribulokinase
Position: -52 Score: 4.6 Sequence: TTGATTGCGCTTTCAT Locus tag: SSP1057 Name: ald Funciton: alanine dehydrogenase
	SSP1057	ald	alanine dehydrogenase
Position: -162 Score: 4.5 Sequence: ATGAAATCGCTTGCTT Locus tag: SSP1029 Name: acuA Funciton: acetoin utilization protein AcuA Locus tag: SSP1028 Name: acuC Funciton: acetoin utilization protein AcuC
	SSP1029	acuA	acetoin utilization protein AcuA
	SSP1028	acuC	acetoin utilization protein AcuC
Position: -33 Score: 4.5 Sequence: AAGCAAGCGATTTCAT Locus tag: SSP1030 Name: acsA Funciton: acetyl-CoA synthetase
	SSP1030	acsA	acetyl-CoA synthetase

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of CcpA in Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --