Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of CcpA in Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305

Properties
Regulator type: Transcription factor
TF locus tag: SSP1027
Regulator family: LacI
Regulation mode: repressor (activator)
Biological process: Carbon catabolism
Effector: HPr, phosphocarrier protein; Fructose-1,6-diphosphate
Regulog: CcpA - Staphylococcaceae
Statistics of regulated genes:
- Genes 100
- Operons 64
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 391 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -124
Score: 4
Sequence: ATGAAAACGCTTTACC
Locus tag: SSP1869
Name: yusH
Funciton: hypothetical protein
yusH
hypothetical protein

Position: -176
Score: 4.5
Sequence: AAGAAAACGCTTTCCT
Position: -65
Score: 5
Sequence: ATGTAAGCGTTTACTA
Locus tag: SSP2179
Name: xltD
Funciton: Xylitol dehydrogenase
Locus tag: SSP2180
Name: xltT
Funciton: Ribitol/Xylitol/Arabitol transporter, MFS superfamily
Locus tag: SSP2181
Name: xltR
Funciton: predicted transcriptional regulator for xylitol utilization
xltD
Xylitol dehydrogenase
xltT
Ribitol/Xylitol/Arabitol transporter, MFS superfamily
xltR
predicted transcriptional regulator for xylitol utilization

Position: -81
Score: 4.9
Sequence: ATGAAAACCTTTACAA
Locus tag: SSP2282
Name: treP
Funciton: phosphotransferase system trehalose-specific enzyme IIBC component homolog
Locus tag: SSP2281
Name: treA
Funciton: trehalose-6-phosphate hydrolase
Locus tag: SSP2280
Name: treR
Funciton: trehalose-6-phosphate-responsive transcriptional regulator
treP
phosphotransferase system trehalose-specific enzyme IIBC component homolog
treA
trehalose-6-phosphate hydrolase
treR
trehalose-6-phosphate-responsive transcriptional regulator

Position: -44
Score: 5
Sequence: TTGAAAGCGATTACAA
Locus tag: SSP1332
Name: SSP1332
Funciton: hypothetical protein
SSP1332
hypothetical protein

Position: -37
Score: 5
Sequence: ATGAAAGCGCATACAT
Locus tag: SSP0617
Name: null
Funciton: putative regulatory protein
putative regulatory protein

Position: -151
Score: 5
Sequence: TAGAAAACGCTTTCAT
Locus tag: SSP0523
Name: SSP0523
Funciton: putative regulatory protein (DeoR family)
SSP0523
putative regulatory protein (DeoR family)

Position: -158
Score: 4
Sequence: TATAAAACGATATCAT
Position: -40
Score: 5
Sequence: TAGAAAGCGTTTACAA
Locus tag: SSP0245
Name: null
Funciton: putative truncated transcriptional antiterminator
putative truncated transcriptional antiterminator

Position: -79
Score: 4.9
Sequence: ATGAATGCGTTTACAA
Locus tag: SSP0230
Name: null
Funciton: L-lactate permease paralog
L-lactate permease paralog

Position: -72
Score: 4.9
Sequence: TTGATAGCGTTTTCAT
Locus tag: SSP0206
Name: SSP0206
Funciton: putative truncated permease of the major facilitator superfamily
Locus tag: SSP0207
Name: SSP0207
Funciton: major facilitator family sugar transporter
SSP0206
putative truncated permease of the major facilitator superfamily
SSP0207
major facilitator family sugar transporter

Position: -65
Score: 5
Sequence: TTGTAAGCGCTTACTA
Locus tag: SSP0114
Name: null
Funciton: putative oxidoreductase
putative oxidoreductase

Position: -56
Score: 5.2
Sequence: TTGTAAACGTTTACAA
Locus tag: SSP0236
Name: SH0372
Funciton: hypothetical Zn-dependent hydrolase
Locus tag: SSP0237
Name: adhC
Funciton: Zn-dependent alcohol dehydrogenase, class III
SH0372
hypothetical Zn-dependent hydrolase
adhC
Zn-dependent alcohol dehydrogenase, class III

Position: -318
Score: 4.1
Sequence: AGTAAAGCGTTTTCTA
Locus tag: SSP0538
Name: SE1944
Funciton: putative glycosyltransferase
SE1944
putative glycosyltransferase

Position: -47
Score: 4.7
Sequence: ATGAAAGCGTATACTT
Locus tag: SSP0532
Name: SE0247
Funciton: putative permease of the major facilitator superfamily
SE0247
putative permease of the major facilitator superfamily

Position: -232
Score: 4.7
Sequence: ATGGAAGCGTTTTCTA
Locus tag: SSP1648
Name: sdhC
Funciton: succinate dehydrogenase cytochrome b subunit
Locus tag: SSP1647
Name: sdhA
Funciton: succinate dehydrogenase flavoprotein subunit
Locus tag: SSP1646
Name: sdhB
Funciton: succinate dehydrogenase iron-sulfur protein subunit
sdhC
succinate dehydrogenase cytochrome b subunit
sdhA
succinate dehydrogenase flavoprotein subunit
sdhB
succinate dehydrogenase iron-sulfur protein subunit

Position: -100
Score: 4.6
Sequence: ATGTAAACGATTTAAA
Locus tag: SSP0875
Name: sdcS
Funciton: sodium-dependent dicarboxylate transporter
sdcS
sodium-dependent dicarboxylate transporter

Position: -68
Score: 4.4
Sequence: TTTAAAGCGATTCCAT
Locus tag: SSP0836
Name: null
Funciton: sucrose operon repressor
sucrose operon repressor

Position: -66
Score: 4.4
Sequence: TTGGAACCGGTTACAA
Locus tag: SSP0512
Name: scrA
Funciton: PTS system sucrose-specific IIBC component
scrA
PTS system sucrose-specific IIBC component

Position: -64
Score: 4.6
Sequence: TTGAAAACGATTGCAA
Locus tag: SSP0714
Name: SAS074
Funciton: hypothetical protein
SAS074
hypothetical protein

Position: -114
Score: 5
Sequence: ATGTAAACCCTTACAT
Locus tag: SSP0591
Name: SA2109
Funciton: probable amino-acid or metabolite transporter
SA2109
probable amino-acid or metabolite transporter

Position: -109
Score: 5.1
Sequence: ATGTAAGCGTTTTCTT
Locus tag: SSP0598
Name: SA2105
Funciton: hypothetical protein
SA2105
hypothetical protein

Position: -128
Score: 4.6
Sequence: TTGCAATCGTTTTCAA
Locus tag: SSP0715
Name: SA1975
Funciton: predicted membrane-bound hydrolase
Locus tag: SSP0716
Name: SA1974
Funciton: UDP-N-acetylglucosamine pyrophosphorylase
Locus tag: SSP0717
Name: SA1973
Funciton: hemolysin III
SA1975
predicted membrane-bound hydrolase
SA1974
UDP-N-acetylglucosamine pyrophosphorylase
SA1973
hemolysin III

Position: -33
Score: 4.7
Sequence: TTGGAAACGCTTACTT
Locus tag: SSP1440
Name: SA1162
Funciton: hypothetical protein
SA1162
hypothetical protein

Position: -164
Score: 4.3
Sequence: TTGAAATCGCAATCAA
Position: -98
Score: 3.9
Sequence: AATAAAGCGTTTTTAT
Locus tag: SSP2164
Name: SA0511
Funciton: uncharacterized epimerase/dehydratase
SA0511
uncharacterized epimerase/dehydratase

Position: -36
Score: 4.6
Sequence: ATGTAAGCGCAATCAT
Locus tag: SSP2425
Name: SA0225
Funciton: short-chain acyl-CoA oxidase
Locus tag: SSP2424
Name: fadN
Funciton: putative 3-hydroxyacyl-CoA dehydrogenase
Locus tag: SSP2423
Name: fadA
Funciton: putative acetyl-CoA acetyltransferase
SA0225
short-chain acyl-CoA oxidase
fadN
putative 3-hydroxyacyl-CoA dehydrogenase
fadA
putative acetyl-CoA acetyltransferase

Position: -35
Score: 4.2
Sequence: ATGAAACCGATTACAG
Locus tag: SSP0596
Name: SA0184
Funciton: hypothetical protein
Locus tag: SSP0595
Name: murQ
Funciton: N-acetylmuramic acid 6-phosphate etherase
Locus tag: SSP0594
Name: murT
Funciton: predicted N-acetylmuramate PTS system, IIBC components
Locus tag: SSP0593
Name: murR
Funciton: predicted N-acetylmuramate-6-phosphate-responsive transcriptional regulator, RpiR family
SA0184
hypothetical protein
murQ
N-acetylmuramic acid 6-phosphate etherase
murT
predicted N-acetylmuramate PTS system, IIBC components
murR
predicted N-acetylmuramate-6-phosphate-responsive transcriptional regulator, RpiR family

Position: -101
Score: 4.7
Sequence: ATGTAAGCGATTGCAT
Locus tag: SSP0311
Name: rocA
Funciton: 1-pyrroline-5-carboxylate dehydrogenase
rocA
1-pyrroline-5-carboxylate dehydrogenase

Position: -198
Score: 5
Sequence: ATGTAAGGGCTTACAT
Locus tag: SSP1818
Name: rocD
Funciton: ornithine aminotransferase
rocD
ornithine aminotransferase

Position: -33
Score: 4.4
Sequence: ATGTAACGGGTTACAT
Locus tag: SSP1395
Name: rbsD
Funciton: ribose ABC transporter permease protein
Locus tag: SSP1394
Name: rbsA
Funciton: ribose ABC transporter ATP-binding protein
Locus tag: SSP1393
Name: rbsC
Funciton: ribose ABC transporter permease
Locus tag: SSP1392
Name: rbsB
Funciton: ribose ABC transporter (ribose-binding protein)
rbsD
ribose ABC transporter permease protein
rbsA
ribose ABC transporter ATP-binding protein
rbsC
ribose ABC transporter permease
rbsB
ribose ABC transporter (ribose-binding protein)

Position: -302
Score: 5
Sequence: TAGAAAACGCTTTCAA
Position: -30
Score: 5
Sequence: ATGAAAACGGTTACAT
Locus tag: SSP1396
Name: rbsR2
Funciton: transcriptional repressor of ribose operon
rbsR2
transcriptional repressor of ribose operon

Position: -137
Score: 4.1
Sequence: ATGGAAGCGCTTAACA
Locus tag: SSP0889
Name: putP
Funciton: high affinity proline permease
putP
high affinity proline permease

Position: -80
Score: 5
Sequence: TTGTAAACGATTTCAT
Locus tag: SSP0999
Name: putA
Funciton: proline dehydrogenase
putA
proline dehydrogenase

Position: -86
Score: 4.1
Sequence: AGTAAATCGTTTACAT
Locus tag: SSP1037
Name: ptaA
Funciton: PTS system N-acetylglucosamine-specific IIBC component
Locus tag: SSP1038
Name: SE1402
Funciton: hypothetical hydrolase
ptaA
PTS system N-acetylglucosamine-specific IIBC component
SE1402
hypothetical hydrolase

Position: -148
Score: 4.8
Sequence: TTTAAAACGTTTACAT
Locus tag: SSP1068
Name: pfkA
Funciton: 6-phosphofructokinase
Locus tag: SSP1069
Name: pykA
Funciton: pyruvate kinase
pfkA
6-phosphofructokinase
pykA
pyruvate kinase

Position: -43
Score: 4.9
Sequence: TTGTAAAGGCTTACAT
Locus tag: SSP0975
Name: pckA
Funciton: phosphoenolpyruvate carboxykinase
pckA
phosphoenolpyruvate carboxykinase

Position: -65
Score: 4.2
Sequence: ATGTAAGTGCTATCAA
Locus tag: SSP2235
Name: nupC
Funciton: pyrimidine nucleoside transporter
nupC
pyrimidine nucleoside transporter

Position: -157
Score: 4.6
Sequence: TTGTAAACGCTACCAT
Locus tag: SSP0374
Name: nanK
Funciton: predicted N-acetyl-D-mannosamine kinase, ROK family
nanK
predicted N-acetyl-D-mannosamine kinase, ROK family

Position: -182
Score: 4.6
Sequence: ATGGTAGCGTTTACAA
Locus tag: SSP0375
Name: nanA
Funciton: N-acetylneuraminate lyase
Locus tag: SSP0376
Name: nanT
Funciton: predicted sialic acid transporter
nanA
N-acetylneuraminate lyase
nanT
predicted sialic acid transporter

Position: -90
Score: 4.1
Sequence: TAGAAAACGCTTTACT
Locus tag: SSP0539
Name: mqo
Funciton: malate:quinone oxidoreductase
mqo
malate:quinone oxidoreductase

Position: -145
Score: 5.1
Sequence: ATGTAAGCGTTTTCTT
Locus tag: SSP2297
Name: lip
Funciton: triacylglycerol lipase precursor
lip
triacylglycerol lipase precursor

Position: -100
Score: 4.8
Sequence: TAGAAAACGCTTTCTA
Locus tag: SSP2205
Name: kbl
Funciton: 2-amino-3-ketobutyrate coenzyme A ligase
kbl
2-amino-3-ketobutyrate coenzyme A ligase

Position: -56
Score: 4.3
Sequence: ATGTAAGCGTATACTC
Locus tag: SSP0008
Name: hutH
Funciton: histidine ammonia-lyase
hutH
histidine ammonia-lyase

Position: -37
Score: 5
Sequence: ATGAAAGCGTTTTCTA
Locus tag: SSP0524
Name: gutB
Funciton: putative dehydrogenase
Locus tag: SSP0525
Name: dhaK
Funciton: PTS-dependent dihydroxyacetone kinase, dihydroxyacetone-binding subunit dhaK
Locus tag: SSP0526
Name: dhaL
Funciton: PTS-dependent dihydroxyacetone kinase, ADP-binding subunit dhaL
Locus tag: SSP0527
Name: rpiB
Funciton: putative ribose 5-phosphate isomerase
gutB
putative dehydrogenase
dhaK
PTS-dependent dihydroxyacetone kinase, dihydroxyacetone-binding subunit dhaK
dhaL
PTS-dependent dihydroxyacetone kinase, ADP-binding subunit dhaL
rpiB
putative ribose 5-phosphate isomerase

Position: -112
Score: 4.8
Sequence: ATGAAATCGTTTTCTT
Locus tag: SSP0231
Name: csbX
Funciton: putative alpha-ketoglutarate permease
csbX
putative alpha-ketoglutarate permease

Position: -86
Score: 5.1
Sequence: TTGTAAGCGATTTCAT
Locus tag: SSP0401
Name: gudP
Funciton: glucarate transporter
gudP
glucarate transporter

Position: -83
Score: 4.6
Sequence: TTGCAAGCGCTTGCAA
Locus tag: SSP0410
Name: gntR
Funciton: gluconate operon transcriptional repressor
Locus tag: SSP0411
Name: gntK
Funciton: gluconokinase
Locus tag: SSP0412
Name: gntP
Funciton: gluconate permease
gntR
gluconate operon transcriptional repressor
gntK
gluconokinase
gntP
gluconate permease

Position: -113
Score: 4.8
Sequence: AAGGAAACGCTTACAT
Locus tag: SSP0582
Name: glvR
Funciton: transcriptional regulator of maltose utilization, RpiR family
glvR
transcriptional regulator of maltose utilization, RpiR family

Position: -117
Score: 4.8
Sequence: ATGTAAGCGTTTCCTT
Locus tag: SSP0583
Name: glvC
Funciton: maltose-specific enzyme IICB of PTS system
glvC
maltose-specific enzyme IICB of PTS system

Position: -74
Score: 5
Sequence: TTGTAAACGTTTACTT
Locus tag: SSP0557
Name: gltS
Funciton: sodium/glutamate symporter
gltS
sodium/glutamate symporter

Position: -28
Score: 5
Sequence: ATGAAATCGTTTACAA
Locus tag: SSP0178
Name: glpK
Funciton: glycerate kinase
glpK
glycerate kinase

Position: -145
Score: 4.7
Sequence: TTGACAACGCTTACAA
Locus tag: SSP1461
Name: glpF
Funciton: glycerol uptake facilitator
Locus tag: SSP1460
Name: glpK
Funciton: glycerol kinase
Locus tag: SSP1459
Name: glpD
Funciton: aerobic glycerol-3-phosphate dehydrogenase
glpF
glycerol uptake facilitator
glpK
glycerol kinase
glpD
aerobic glycerol-3-phosphate dehydrogenase

Position: -44
Score: 4.3
Sequence: AAGAAAGCGTAAACAT
Locus tag: SSP2019
Name: fruR
Funciton: transcription repressor of fructose operon, DeoR family
Locus tag: SSP2018
Name: fruB
Funciton: fructose 1-phosphate kinase
Locus tag: SSP2017
Name: fruA
Funciton: PTS system fructose-specific IIABC component
fruR
transcription repressor of fructose operon, DeoR family
fruB
fructose 1-phosphate kinase
fruA
PTS system fructose-specific IIABC component

Position: -147
Score: 4.4
Sequence: TTGAAAGCGCTATCTC
Locus tag: SSP1031
Name: fhs
Funciton: formyltetrahydrofolate synthetase
Locus tag: SSP1032
Name: fhs
Funciton: formyltetrahydrofolate synthetase
fhs
formyltetrahydrofolate synthetase
fhs
formyltetrahydrofolate synthetase

Position: -101
Score: 4.6
Sequence: ATAAAAACGCTTACAA
Locus tag: SSP0759
Name: fbaA
Funciton: fructose-bisphosphate aldolase
fbaA
fructose-bisphosphate aldolase

Position: -91
Score: 5
Sequence: ATGTAAGGGCTTACAT
Locus tag: SSP2427
Name: fadX
Funciton: putative acetyl-CoA transferase
Locus tag: SSP2426
Name: fadE
Funciton: putative acyl-CoA synthetase
fadX
putative acetyl-CoA transferase
fadE
putative acyl-CoA synthetase

Position: -57
Score: 4.3
Sequence: ATGAAAGGCTTTGCAT
Locus tag: SSP0327
Name: drp35
Funciton: lactonase Drp35
drp35
lactonase Drp35

Position: -67
Score: 4.2
Sequence: ATATTAGCGTTTACAT
Locus tag: SSP2070
Name: dhaK
Funciton: dihydroxyacetone kinase, DhaK subunit
Locus tag: SSP2069
Name: dhaL
Funciton: dihydroxyacetone kinase, DhaL subunit
Locus tag: SSP2068
Name: SA0607
Funciton: hypothetical protein
dhaK
dihydroxyacetone kinase, DhaK subunit
dhaL
dihydroxyacetone kinase, DhaL subunit
SA0607
hypothetical protein

Position: -39
Score: 5
Sequence: AAGAAAACGCTTTCAA
Locus tag: SSP2440
Name: cstA
Funciton: carbon starvation protein CstA
cstA
carbon starvation protein CstA

Position: -42
Score: 4.8
Sequence: ATGAAAGCCATTTCAT
Locus tag: SSP1071
Name: citZ
Funciton: citrate synthase
Locus tag: SSP1072
Name: citC
Funciton: isocitrate dehydrogenase
citZ
citrate synthase
citC
isocitrate dehydrogenase

Position: -26
Score: 4.8
Sequence: AAGAAATCGTTTTCAA
Locus tag: SSP1027
Name: ccpA
Funciton: catabolite control protein A
ccpA
catabolite control protein A

Position: -73
Score: 4.3
Sequence: ATGTAAGCACTATCAT
Locus tag: SSP0563
Name: araB2
Funciton: putative L-ribulokinase
araB2
putative L-ribulokinase

Position: -149
Score: 5
Sequence: TAGTAAACGCTTACAT
Position: -38
Score: 4.5
Sequence: AGGAAAGCGTTTTCTT
Locus tag: SSP2178
Name: araB
Funciton: putative L-ribulokinase
araB
putative L-ribulokinase

Position: -52
Score: 4.6
Sequence: TTGATTGCGCTTTCAT
Locus tag: SSP1057
Name: ald
Funciton: alanine dehydrogenase
ald
alanine dehydrogenase

Position: -162
Score: 4.5
Sequence: ATGAAATCGCTTGCTT
Locus tag: SSP1029
Name: acuA
Funciton: acetoin utilization protein AcuA
Locus tag: SSP1028
Name: acuC
Funciton: acetoin utilization protein AcuC
acuA
acetoin utilization protein AcuA
acuC
acetoin utilization protein AcuC

Position: -33
Score: 4.5
Sequence: AAGCAAGCGATTTCAT
Locus tag: SSP1030
Name: acsA
Funciton: acetyl-CoA synthetase
acsA
acetyl-CoA synthetase
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