Regulon of CcpA in Staphylococcus haemolyticus JCSC1435

Properties
Regulator type:	Transcription factor
TF locus tag:	SH1186
Regulator family:	LacI
Regulation mode:	repressor (activator)
Biological process:	Carbon catabolism
Effector:	HPr, phosphocarrier protein; Fructose-1,6-diphosphate
Regulog:	CcpA - Staphylococcaceae
Statistics of regulated genes:
- Genes	96
- Operons	54
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 391 sites [see more]

Member of regulog collections

By taxonomy - Staphylococcaceae
By trascription factor - CcpA
By TF family - LacI
By effector - HPr, phosphocarrier protein
By effector - Fructose-1,6-diphosphate
By pathway - Carbon catabolism

Regulated operons
	Locus Tag	Name	Function
Position: -95 Score: 4.8 Sequence: TAGAAAACGCTTTCTT Position: -37 Score: 4.9 Sequence: ATGATAACGTTTTCAT Locus tag: SH0208 Name: xylB Funciton: putative xylulokinase
	SH0208	xylB	putative xylulokinase
Position: -69 Score: 4.9 Sequence: ATGAAAGCCTTTACAA Locus tag: SH2538 Name: treP Funciton: phosphotransferase system trehalose-specific enzyme IIBC component homolog Locus tag: SH2537 Name: treA Funciton: trehalose-6-phosphate hydrolase Locus tag: SH2536 Name: treR Funciton: trehalose-6-phosphate-responsive transcriptional regulator
	SH2538	treP	phosphotransferase system trehalose-specific enzyme IIBC component homolog
	SH2537	treA	trehalose-6-phosphate hydrolase
	SH2536	treR	trehalose-6-phosphate-responsive transcriptional regulator
Position: -29 Score: 5.3 Sequence: ATGAAAACGTTTTCAT Locus tag: SH0371 Name: SH0371 Funciton: hypothetical transcriptional regulator, LacI family Locus tag: SH0372 Name: SH0372 Funciton: hypothetical Zn-dependent hydrolase Locus tag: SH0373 Name: adhC Funciton: Zn-dependent alcohol dehydrogenase, class III
	SH0371	SH0371	hypothetical transcriptional regulator, LacI family
	SH0372	SH0372	hypothetical Zn-dependent hydrolase
	SH0373	adhC	Zn-dependent alcohol dehydrogenase, class III
Position: -248 Score: 4.7 Sequence: ATTAAAACGCTTTCTT Locus tag: SH0692 Name: SE1944 Funciton: putative glycosyltransferase
	SH0692	SE1944	putative glycosyltransferase
Position: -285 Score: 4.7 Sequence: ATGGAAGCGTTTTCTA Position: -61 Score: 4 Sequence: TTGAAAAGACTTTCTT Locus tag: SH1814 Name: sdhC Funciton: succinate dehydrogenase cytochrome b subunit Locus tag: SH1813 Name: sdhA Funciton: succinate dehydrogenase flavoprotein subunit Locus tag: SH1812 Name: sdhB Funciton: succinate dehydrogenase iron-sulfur protein subunit
	SH1814	sdhC	succinate dehydrogenase cytochrome b subunit
	SH1813	sdhA	succinate dehydrogenase flavoprotein subunit
	SH1812	sdhB	succinate dehydrogenase iron-sulfur protein subunit
Position: -63 Score: 4.4 Sequence: TTGGAACCGGTTACAA Locus tag: SH0671 Name: scrA Funciton: PTS system sucrose-specific IIBC component
	SH0671	scrA	PTS system sucrose-specific IIBC component
Position: -63 Score: 4.7 Sequence: TTGAAAACGATTACAC Locus tag: SH0868 Name: SAS074 Funciton: hypothetical protein
	SH0868	SAS074	hypothetical protein
Position: -173 Score: 4.8 Sequence: ATGGAAGCGATTTCAA Locus tag: SH0739 Name: SA2109 Funciton: probable amino-acid or metabolite transporter
	SH0739	SA2109	probable amino-acid or metabolite transporter
Position: -127 Score: 4.7 Sequence: TTGTAAGCGTTTTCCT Locus tag: SH0745 Name: SA2105 Funciton: hypothetical protein
	SH0745	SA2105	hypothetical protein
Position: -129 Score: 4.7 Sequence: GTGTAATCGTTTTCAA Locus tag: SH0869 Name: SA1975 Funciton: predicted membrane-bound hydrolase Locus tag: SH0870 Name: SA1974 Funciton: UDP-N-acetylglucosamine pyrophosphorylase Locus tag: SH0871 Name: SA1973 Funciton: hemolysin III
	SH0869	SA1975	predicted membrane-bound hydrolase
	SH0870	SA1974	UDP-N-acetylglucosamine pyrophosphorylase
	SH0871	SA1973	hemolysin III
Position: -189 Score: 4.8 Sequence: AAGTAAGCGATTACAT Locus tag: SH1310 Name: SA1437 Funciton: allophanate hydrolase subunit 1 Locus tag: SH1311 Name: SA1436 Funciton: allophanate hydrolase subunit 2 Locus tag: SH1312 Name: SA1435 Funciton: acetyl-CoA carboxylase (biotin carboxyl carrier subunit) Locus tag: SH1313 Name: SA1434 Funciton: acetyl-CoA carboxylase (biotin carboxylase subunit) Locus tag: SH1314 Name: SA1433 Funciton: putative lactame utilization protein Locus tag: SH1315 Name: SA1432 Funciton: putative transporter
	SH1310	SA1437	allophanate hydrolase subunit 1
	SH1311	SA1436	allophanate hydrolase subunit 2
	SH1312	SA1435	acetyl-CoA carboxylase (biotin carboxyl carrier subunit)
	SH1313	SA1434	acetyl-CoA carboxylase (biotin carboxylase subunit)
	SH1314	SA1433	putative lactame utilization protein
	SH1315	SA1432	putative transporter
Position: -29 Score: 4.8 Sequence: ATGAAAGCGTTTCCTT Locus tag: SH1581 Name: SA1162 Funciton: hypothetical protein
	SH1581	SA1162	hypothetical protein
Position: -93 Score: 4.9 Sequence: TTGTAAACCTTTTCAA Locus tag: SH1944 Name: SA0873 Funciton: DJ-1/PfpI family protein
	SH1944	SA0873	DJ-1/PfpI family protein
Position: -101 Score: 4.4 Sequence: AAGAAAGCGCTTTTAT Locus tag: SH2450 Name: SA0511 Funciton: uncharacterized epimerase/dehydratase
	SH2450	SA0511	uncharacterized epimerase/dehydratase
Position: -33 Score: 3.8 Sequence: ATGTAAGTGATTACAG Locus tag: SH0743 Name: SA0184 Funciton: hypothetical protein Locus tag: SH0742 Name: murQ Funciton: N-acetylmuramic acid 6-phosphate etherase Locus tag: SH0741 Name: murT Funciton: predicted N-acetylmuramate PTS system, IIBC components Locus tag: SH0740 Name: murR Funciton: predicted N-acetylmuramate-6-phosphate-responsive transcriptional regulator, RpiR family
	SH0743	SA0184	hypothetical protein
	SH0742	murQ	N-acetylmuramic acid 6-phosphate etherase
	SH0741	murT	predicted N-acetylmuramate PTS system, IIBC components
	SH0740	murR	predicted N-acetylmuramate-6-phosphate-responsive transcriptional regulator, RpiR family
Position: -128 Score: 4.7 Sequence: ATGTAAGCGATTGCAA Locus tag: SH0500 Name: rocA Funciton: 1-pyrroline-5-carboxylate dehydrogenase
	SH0500	rocA	1-pyrroline-5-carboxylate dehydrogenase
Position: -161 Score: 4.5 Sequence: CTGTAAGGGCTTTCAT Locus tag: SH1993 Name: rocD Funciton: ornithine aminotransferase
	SH1993	rocD	ornithine aminotransferase
Position: -31 Score: 5 Sequence: ATGTAAGCGGTTACAT Locus tag: SH0174 Name: rbsR2 Funciton: transcriptional repressor of ribose operon Locus tag: SH0175 Name: rbsK Funciton: ribokinase Locus tag: SH0176 Name: rbsD Funciton: ribose ABC transporter permease protein Locus tag: SH0177 Name: rbsA Funciton: ribose ABC transporter ATP-binding protein Locus tag: SH0178 Name: rbsC Funciton: ribose ABC transporter permease Locus tag: SH0179 Name: rbsB Funciton: ribose ABC transporter (ribose-binding protein)
	SH0174	rbsR2	transcriptional repressor of ribose operon
	SH0175	rbsK	ribokinase
	SH0176	rbsD	ribose ABC transporter permease protein
	SH0177	rbsA	ribose ABC transporter ATP-binding protein
	SH0178	rbsC	ribose ABC transporter permease
	SH0179	rbsB	ribose ABC transporter (ribose-binding protein)
Position: -81 Score: 5 Sequence: TTGAAAACGCTTTCTA Locus tag: SH1157 Name: putA Funciton: proline dehydrogenase
	SH1157	putA	proline dehydrogenase
Position: -101 Score: 3.9 Sequence: TCAAAAGCGCTTACAT Locus tag: SH1198 Name: ptaA Funciton: PTS system N-acetylglucosamine-specific IIBC component Locus tag: SH1199 Name: SE1402 Funciton: hypothetical hydrolase
	SH1198	ptaA	PTS system N-acetylglucosamine-specific IIBC component
	SH1199	SE1402	hypothetical hydrolase
Position: -270 Score: 4.9 Sequence: TTGAAAAGGTTTACAA Position: -116 Score: 4.8 Sequence: TTGAAATCGTTTTCTT Locus tag: SH0537 Name: pfoR Funciton: putative PTS transporter Locus tag: SH0538 Name: sdaAB Funciton: L-serine dehydratase beta chain Locus tag: SH0539 Name: sdaAA Funciton: L-serine dehydratase alpha chain
	SH0537	pfoR	putative PTS transporter
	SH0538	sdaAB	L-serine dehydratase beta chain
	SH0539	sdaAA	L-serine dehydratase alpha chain
Position: -152 Score: 4.6 Sequence: TATAAAACGTTTACAT Locus tag: SH1226 Name: pfkA Funciton: 6-phosphofructokinase Locus tag: SH1227 Name: pykA Funciton: pyruvate kinase
	SH1226	pfkA	6-phosphofructokinase
	SH1227	pykA	pyruvate kinase
Position: -53 Score: 4.9 Sequence: ATGTAAAGGCTTACAA Locus tag: SH1137 Name: pckA Funciton: phosphoenolpyruvate carboxykinase
	SH1137	pckA	phosphoenolpyruvate carboxykinase
Position: -150 Score: 4.9 Sequence: TTGTAAACGCTATCAT Locus tag: SH0281 Name: nanK Funciton: predicted N-acetyl-D-mannosamine kinase, ROK family
	SH0281	nanK	predicted N-acetyl-D-mannosamine kinase, ROK family
Position: -108 Score: 4.9 Sequence: ATGATAGCGTTTACAA Locus tag: SH0282 Name: nanA Funciton: N-acetylneuraminate lyase Locus tag: SH0283 Name: nanT Funciton: predicted sialic acid transporter
	SH0282	nanA	N-acetylneuraminate lyase
	SH0283	nanT	predicted sialic acid transporter
Position: -77 Score: 4.7 Sequence: AAGAAAGCGTTTTAAT Locus tag: SH0693 Name: mqo Funciton: malate:quinone oxidoreductase
	SH0693	mqo	malate:quinone oxidoreductase
Position: -159 Score: 5 Sequence: TTGAAAGCGTTTACTA Locus tag: SH1407 Name: malR Funciton: maltose operon transcriptional repressor Locus tag: SH1408 Name: malA Funciton: alpha-D-1,4-glucosidase
	SH1407	malR	maltose operon transcriptional repressor
	SH1408	malA	alpha-D-1,4-glucosidase
Position: -169 Score: 4.7 Sequence: ATGTAAACGCTTTCTC Locus tag: SH0168 Name: lip Funciton: triacylglycerol lipase precursor
	SH0168	lip	triacylglycerol lipase precursor
Position: -74 Score: 4.3 Sequence: ATGATAGTGCTTTCAT Locus tag: SH2457 Name: kbl Funciton: 2-amino-3-ketobutyrate coenzyme A ligase
	SH2457	kbl	2-amino-3-ketobutyrate coenzyme A ligase
Position: -41 Score: 3.9 Sequence: TTGTAAGTGTATTCTA Locus tag: SH0376 Name: ipdC Funciton: indole-3-pyruvate decarboxylase homolog
	SH0376	ipdC	indole-3-pyruvate decarboxylase homolog
Position: -241 Score: 5 Sequence: TTGAAAACGATTTCAA Locus tag: SH0566 Name: gudP Funciton: glucarate transporter
	SH0566	gudP	glucarate transporter
Position: -77 Score: 4.5 Sequence: TTGAAAACCCTTTAAA Position: -35 Score: 4.3 Sequence: ATGAAAGCGAAATCAT Locus tag: SH1992 Name: gudB Funciton: NAD-specific glutamate dehydrogenase
	SH1992	gudB	NAD-specific glutamate dehydrogenase
Position: -81 Score: 4.7 Sequence: AAGAAAGCGTTTGCAA Locus tag: SH0574 Name: gntR Funciton: gluconate operon transcriptional repressor Locus tag: SH0575 Name: gntK Funciton: gluconokinase Locus tag: SH0576 Name: gntP Funciton: gluconate permease
	SH0574	gntR	gluconate operon transcriptional repressor
	SH0575	gntK	gluconokinase
	SH0576	gntP	gluconate permease
Position: -142 Score: 4.3 Sequence: ATAAAAGCGTTTTCTT Position: -115 Score: 4.7 Sequence: TAGTAAACGCTTACAC Locus tag: SH0731 Name: glvR Funciton: transcriptional regulator of maltose utilization, RpiR family
	SH0731	glvR	transcriptional regulator of maltose utilization, RpiR family
Position: -121 Score: 4.7 Sequence: GTGTAAGCGTTTACTA Locus tag: SH0732 Name: glvC Funciton: maltose-specific enzyme IICB of PTS system
	SH0732	glvC	maltose-specific enzyme IICB of PTS system
Position: -64 Score: 4.5 Sequence: TTTATAGCGCTTACAA Locus tag: SH0713 Name: gltS Funciton: sodium/glutamate symporter
	SH0713	gltS	sodium/glutamate symporter
Position: -128 Score: 4.7 Sequence: TTGACAACGCTTACAA Locus tag: SH1614 Name: glpF Funciton: glycerol uptake facilitator Locus tag: SH1609 Name: glpK Funciton: glycerol kinase Locus tag: SH1608 Name: glpD Funciton: aerobic glycerol-3-phosphate dehydrogenase
	SH1614	glpF	glycerol uptake facilitator
	SH1609	glpK	glycerol kinase
	SH1608	glpD	aerobic glycerol-3-phosphate dehydrogenase
Position: -171 Score: 4.6 Sequence: TTGAAAACGCTTTATA Locus tag: SH0521 Name: glcA Funciton: glucose-specific PTS enzyme IIABC
	SH0521	glcA	glucose-specific PTS enzyme IIABC
Position: -45 Score: 4.3 Sequence: ATGTAAGCGTACACAT Locus tag: SH2196 Name: fruR Funciton: transcription repressor of fructose operon, DeoR family Locus tag: SH2195 Name: fruB Funciton: fructose 1-phosphate kinase Locus tag: SH2194 Name: fruA Funciton: PTS system fructose-specific IIABC component
	SH2196	fruR	transcription repressor of fructose operon, DeoR family
	SH2195	fruB	fructose 1-phosphate kinase
	SH2194	fruA	PTS system fructose-specific IIABC component
Position: -138 Score: 4.3 Sequence: TTGGAAACGCTCTCAA Locus tag: SH1190 Name: fhs Funciton: formyltetrahydrofolate synthetase
	SH1190	fhs	formyltetrahydrofolate synthetase
Position: -64 Score: 4.3 Sequence: ATGTAAGCGGTTTTAT Locus tag: SH0559 Name: fbp Funciton: fructose-bisphosphatase
	SH0559	fbp	fructose-bisphosphatase
Position: -97 Score: 5 Sequence: TTGAAAACGATTACAT Locus tag: SH0300 Name: drp35 Funciton: lactonase Drp35
	SH0300	drp35	lactonase Drp35
Position: -64 Score: 4.6 Sequence: ATGATAGCGCATACAT Locus tag: SH2244 Name: dhaK Funciton: dihydroxyacetone kinase, DhaK subunit Locus tag: SH2243 Name: dhaL Funciton: dihydroxyacetone kinase, DhaL subunit Locus tag: SH2242 Name: SA0607 Funciton: hypothetical protein
	SH2244	dhaK	dihydroxyacetone kinase, DhaK subunit
	SH2243	dhaL	dihydroxyacetone kinase, DhaL subunit
	SH2242	SA0607	hypothetical protein
Position: -42 Score: 4.4 Sequence: TTGGAAGCCATTACAT Locus tag: SH1230 Name: citZ Funciton: citrate synthase Locus tag: SH1231 Name: citC Funciton: isocitrate dehyrogenase
	SH1230	citZ	citrate synthase
	SH1231	citC	isocitrate dehyrogenase
Position: -56 Score: 5 Sequence: ATGAAAACGTTTTCTA Locus tag: SH0421 Name: citM Funciton: citrate/H+ symporter, CitMHS family
	SH0421	citM	citrate/H+ symporter, CitMHS family
Position: -26 Score: 4.6 Sequence: AATAAAACGCTTACAA Locus tag: SH1186 Name: ccpA Funciton: catabolite control protein A
	SH1186	ccpA	catabolite control protein A
Position: -50 Score: 4.7 Sequence: ATGAAAGCGCTTTATA Locus tag: SH0367 Name: arcA Funciton: arginine deiminase Locus tag: SH0368 Name: arcD Funciton: arginine/ornithine antiporter Locus tag: SH0369 Name: arcR Funciton: transcription regulator of arginine catabolism, Crp/Fnr family
	SH0367	arcA	arginine deiminase
	SH0368	arcD	arginine/ornithine antiporter
	SH0369	arcR	transcription regulator of arginine catabolism, Crp/Fnr family
Position: -77 Score: 5.1 Sequence: AAGTAAACGCTTACAT Locus tag: SH0547 Name: aldA Funciton: aldehyde dehydrogenase
	SH0547	aldA	aldehyde dehydrogenase
Position: -52 Score: 4.1 Sequence: CTGATTGCGCTTTCAT Locus tag: SH1216 Name: ald Funciton: alanine dehydrogenase
	SH1216	ald	alanine dehydrogenase
Position: -144 Score: 4.9 Sequence: ATGAAATCGCTTTCTT Locus tag: SH1188 Name: acuA Funciton: acetoin utilization protein AcuA Locus tag: SH1187 Name: acuC Funciton: acetoin utilization protein AcuC
	SH1188	acuA	acetoin utilization protein AcuA
	SH1187	acuC	acetoin utilization protein AcuC
Position: -36 Score: 4.9 Sequence: AAGAAAGCGATTTCAT Locus tag: SH1189 Name: acsA Funciton: acetyl-CoA synthetase
	SH1189	acsA	acetyl-CoA synthetase
Position: -91 Score: 4.6 Sequence: ATAAAAGCGCTTACAA Locus tag: SH0227 Name: acoL2 Funciton: dihydrolipoamide dehydrogenase
	SH0227	acoL2	dihydrolipoamide dehydrogenase
Position: -103 Score: 4.7 Sequence: GAGAAAACGCTTACAT Locus tag: SH0223 Name: acoL Funciton: dihydrolipoamide dehydrogenase Locus tag: SH0224 Name: acoA Funciton: acetoin dehydrogenase E1 subunit alpha Locus tag: SH0225 Name: acoB Funciton: acetoin dehydrogenase E1 subunit beta Locus tag: SH0226 Name: acoC Funciton: acetoin dehydrogenase E2 component
	SH0223	acoL	dihydrolipoamide dehydrogenase
	SH0224	acoA	acetoin dehydrogenase E1 subunit alpha
	SH0225	acoB	acetoin dehydrogenase E1 subunit beta
	SH0226	acoC	acetoin dehydrogenase E2 component
Position: -61 Score: 5 Sequence: AAGAAAGCGTTTACAA Locus tag: SH0623 Name: aapA Funciton: D-serine/D-alanine/glycine transporter
	SH0623	aapA	D-serine/D-alanine/glycine transporter

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of CcpA in Staphylococcus haemolyticus JCSC1435

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --