Regulon of ArgR in Shewanella piezotolerans WP3

Properties
Regulator type:	Transcription factor
TF locus tag:	swp_4101
Regulator family:	ArgR
Regulation mode:	repressor (activator)
Biological process:	Arginine degradation; Arginine biosynthesis
Effector:	Arginine
Regulog:	ArgR - Shewanellaceae
Statistics of regulated genes:
- Genes	37
- Operons	17
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 502 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By trascription factor - ArgR
By TF family - ArgR
By effector - Arginine
By pathway - Arginine degradation
By pathway - Arginine biosynthesis

Regulated operons
	Locus Tag	Name	Function
Position: -90 Score: 5.2 Sequence: GTTGAATGAATATTCAAT Locus tag: swp_1256 Name: argW Funciton: Predicted arginine uptake transporter, COG3314 family
	swp_1256	argW	Predicted arginine uptake transporter, COG3314 family
Position: -151 Score: 4.5 Sequence: TATAAATATAAATGCACC Locus tag: swp_3957 Name: SO0762 Funciton: Isochorismate hydrolase (EC 3.3.2.1)
	swp_3957	SO0762	Isochorismate hydrolase (EC 3.3.2.1)
Position: -83 Score: 4.5 Sequence: TTTGAATGTTTGTTCAAA Position: -59 Score: 4.8 Sequence: CTTGAATGATTATTCAAA Position: -32 Score: 4.4 Sequence: CTTGAATGTTCATTCAAG Locus tag: swp_0975 Name: SO3392 Funciton: NADH-dependent flavin oxidoreductase, Oye family
	swp_0975	SO3392	NADH-dependent flavin oxidoreductase, Oye family
Position: -266 Score: 4.5 Sequence: CCTAAATATATATTCAAA Locus tag: swp_2055 Name: argC Funciton: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
	swp_2055	argC	N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
Position: -244 Score: 4 Sequence: TATGACTAAATATGCTTA Locus tag: swp_0747 Name: astC Funciton: Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81) Locus tag: swp_0748 Name: astA Funciton: Arginine N-succinyltransferase (EC 2.3.1.109) Locus tag: swp_0749 Name: astD Funciton: Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71) Locus tag: swp_0750 Name: SO0620 Funciton: Conserved hypothetical protein
	swp_0747	astC	Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81)
	swp_0748	astA	Arginine N-succinyltransferase (EC 2.3.1.109)
	swp_0749	astD	Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71)
	swp_0750	SO0620	Conserved hypothetical protein
Position: -55 Score: 4.9 Sequence: AATGCATAAAGATTCATT Locus tag: swp_2056 Name: argB Funciton: Acetylglutamate kinase (EC 2.7.2.8) Locus tag: swp_2057 Name: argF Funciton: Ornithine carbamoyltransferase (EC 2.1.3.3) Locus tag: swp_2058 Name: argG Funciton: Argininosuccinate synthase (EC 6.3.4.5) Locus tag: swp_2059 Name: argH Funciton: Argininosuccinate lyase (EC 4.3.2.1)
	swp_2056	argB	Acetylglutamate kinase (EC 2.7.2.8)
	swp_2057	argF	Ornithine carbamoyltransferase (EC 2.1.3.3)
	swp_2058	argG	Argininosuccinate synthase (EC 6.3.4.5)
	swp_2059	argH	Argininosuccinate lyase (EC 4.3.2.1)
Position: -167 Score: 4 Sequence: ATTTCATTATTAGTCATC Position: -135 Score: 4.6 Sequence: TGTGCATTTTGATGCAAA Locus tag: swp_1743 Name: astB Funciton: Succinylarginine dihydrolase (EC 3.5.3.23)
	swp_1743	astB	Succinylarginine dihydrolase (EC 3.5.3.23)
Position: -110 Score: 3.7 Sequence: AGTGATAATAAATGCTTT Position: -89 Score: 5.4 Sequence: ATTGCATTAAAATGCAAT Locus tag: swp_2207 Name: argA Funciton: N-acetylglutamate synthase (EC 2.3.1.1)
	swp_2207	argA	N-acetylglutamate synthase (EC 2.3.1.1)
Position: -308 Score: 5 Sequence: GTTGAATTTTTACTCAAT Position: -259 Score: 4 Sequence: GGTGAATATTAGTTAATT Locus tag: swp_4207 Name: aprE2 Funciton: Cold-active alkaline serine protease (EC 3.4.21.62)
	swp_4207	aprE2	Cold-active alkaline serine protease (EC 3.4.21.62)
Position: -292 Score: 4.4 Sequence: GATTAATTTAAATGCATC Locus tag: swp_3001 Name: hisG Funciton: ATP phosphoribosyltransferase (EC 2.4.2.17) Locus tag: swp_3003 Name: hisD Funciton: Histidinol dehydrogenase (EC 1.1.1.23) Locus tag: swp_3004 Name: hisC Funciton: Histidinol-phosphate aminotransferase (EC 2.6.1.9) Locus tag: swp_3005 Name: hisB Funciton: Histidinol-phosphatase (EC 3.1.3.15) / Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) Locus tag: swp_3006 Name: hisH Funciton: Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) Locus tag: swp_3007 Name: hisA Funciton: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16) Locus tag: swp_3008 Name: hisF Funciton: Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-) Locus tag: swp_3009 Name: hisI Funciton: Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) / Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31)
	swp_3001	hisG	ATP phosphoribosyltransferase (EC 2.4.2.17)
	swp_3003	hisD	Histidinol dehydrogenase (EC 1.1.1.23)
	swp_3004	hisC	Histidinol-phosphate aminotransferase (EC 2.6.1.9)
	swp_3005	hisB	Histidinol-phosphatase (EC 3.1.3.15) / Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19)
	swp_3006	hisH	Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-)
	swp_3007	hisA	Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16)
	swp_3008	hisF	Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-)
	swp_3009	hisI	Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) / Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31)
Position: -143 Score: 3.4 Sequence: AATACTTAATAATTGAAC Position: -27 Score: 4.5 Sequence: TTTGAATATATATTTAGG Locus tag: swp_2054 Name: argE Funciton: Acetylornithine deacetylase (EC 3.5.1.16)
	swp_2054	argE	Acetylornithine deacetylase (EC 3.5.1.16)
Position: -104 Score: 5 Sequence: TGTGAATACTTATTCACT Locus tag: swp_2592 Name: SO2306 Funciton: Cell division protein FtsK
	swp_2592	SO2306	Cell division protein FtsK
Position: -355 Score: 4.4 Sequence: TCTGCATAATTAGTCAAG Position: -331 Score: 4.3 Sequence: AGTGACTATCATTTCACT Position: -310 Score: 4.3 Sequence: TTTGCAATAAAAATCACT Locus tag: swp_3803 Name: gltB Funciton: Glutamate synthase [NADPH] large chain (EC 1.4.1.13) Locus tag: swp_3804 Name: gltD Funciton: Glutamate synthase [NADPH] small chain (EC 1.4.1.13)
	swp_3803	gltB	Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
	swp_3804	gltD	Glutamate synthase [NADPH] small chain (EC 1.4.1.13)
Position: -612 Score: 4 Sequence: TGTGATTTTTAATGCCTC Position: -393 Score: 3.7 Sequence: AGTTCATTTAATATCAAA Locus tag: swp_2362 Name: omp(Arg) Funciton: TonB-dependent receptor
	swp_2362	omp(Arg)	TonB-dependent receptor
Position: -157 Score: 3.6 Sequence: TATCAACAGAAATGCATA Position: -136 Score: 4.4 Sequence: TGTGAATAAATAGTGATT Locus tag: swp_1378 Name: oadG Funciton: Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3) Locus tag: swp_1379 Name: oadA Funciton: Oxaloacetate decarboxylase, alpha chain (EC 4.1.1.3) Locus tag: swp_1380 Name: oadB Funciton: Oxaloacetate decarboxylase, beta chain (EC 4.1.1.3)
	swp_1378	oadG	Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3)
	swp_1379	oadA	Oxaloacetate decarboxylase, alpha chain (EC 4.1.1.3)
	swp_1380	oadB	Oxaloacetate decarboxylase, beta chain (EC 4.1.1.3)
Position: -95 Score: 5.3 Sequence: CATGAATTTTTATTCAAT Locus tag: swp_4101 Name: argR Funciton: Arginine metabolism transcriptional regulator ArgR
	swp_4101	argR	Arginine metabolism transcriptional regulator ArgR
Position: -189 Score: 4.2 Sequence: CGTGATTATTAAATCACA Locus tag: swp_0359 Name: ilvG Funciton: Acetolactate synthase large subunit (EC 2.2.1.6) Locus tag: swp_0360 Name: ilvM Funciton: Acetolactate synthase small subunit (EC 2.2.1.6) Locus tag: swp_0361 Name: ilvE Funciton: Branched-chain amino acid aminotransferase (EC 2.6.1.42) Locus tag: swp_0362 Name: ilvD Funciton: Dihydroxy-acid dehydratase (EC 4.2.1.9) Locus tag: swp_0363 Name: ilvA Funciton: Threonine dehydratase biosynthetic (EC 4.3.1.19)
	swp_0359	ilvG	Acetolactate synthase large subunit (EC 2.2.1.6)
	swp_0360	ilvM	Acetolactate synthase small subunit (EC 2.2.1.6)
	swp_0361	ilvE	Branched-chain amino acid aminotransferase (EC 2.6.1.42)
	swp_0362	ilvD	Dihydroxy-acid dehydratase (EC 4.2.1.9)
	swp_0363	ilvA	Threonine dehydratase biosynthetic (EC 4.3.1.19)

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of ArgR in Shewanella piezotolerans WP3

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --