Regulon of ArgR in Shewanella piezotolerans WP3
| Regulator type: | Transcription factor |
| TF locus tag: | swp_4101 |
| Regulator family: | ArgR |
| Regulation mode: | repressor (activator) |
| Biological process: | Arginine degradation; Arginine biosynthesis |
| Effector: | Arginine |
| Regulog: | ArgR - Shewanellaceae |
| Statistics of regulated genes: | |
| - Genes | 37 |
| - Operons | 17 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By trascription factor - ArgR
- By TF family - ArgR
- By effector - Arginine
- By pathway - Arginine degradation
- By pathway - Arginine biosynthesis
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -90
Score: 5.2 Sequence: GTTGAATGAATATTCAAT
Locus tag: swp_1256
Name: argW Funciton: Predicted arginine uptake transporter, COG3314 family |
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argW
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Predicted arginine uptake transporter, COG3314 family
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Position: -151
Score: 4.5 Sequence: TATAAATATAAATGCACC
Locus tag: swp_3957
Name: SO0762 Funciton: Isochorismate hydrolase (EC 3.3.2.1) |
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SO0762
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Isochorismate hydrolase (EC 3.3.2.1)
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Position: -83
Score: 4.5 Sequence: TTTGAATGTTTGTTCAAA
Position: -59
Score: 4.8 Sequence: CTTGAATGATTATTCAAA
Position: -32
Score: 4.4 Sequence: CTTGAATGTTCATTCAAG
Locus tag: swp_0975
Name: SO3392 Funciton: NADH-dependent flavin oxidoreductase, Oye family |
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SO3392
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NADH-dependent flavin oxidoreductase, Oye family
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Position: -266
Score: 4.5 Sequence: CCTAAATATATATTCAAA
Locus tag: swp_2055
Name: argC Funciton: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) |
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argC
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N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
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Position: -244
Score: 4 Sequence: TATGACTAAATATGCTTA
Locus tag: swp_0747
Name: astC Funciton: Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81)
Locus tag: swp_0748
Name: astA Funciton: Arginine N-succinyltransferase (EC 2.3.1.109)
Locus tag: swp_0749
Name: astD Funciton: Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71)
Locus tag: swp_0750
Name: SO0620 Funciton: Conserved hypothetical protein |
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astC
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Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81)
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astA
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Arginine N-succinyltransferase (EC 2.3.1.109)
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astD
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Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71)
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SO0620
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Conserved hypothetical protein
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Position: -55
Score: 4.9 Sequence: AATGCATAAAGATTCATT
Locus tag: swp_2056
Name: argB Funciton: Acetylglutamate kinase (EC 2.7.2.8)
Locus tag: swp_2057
Name: argF Funciton: Ornithine carbamoyltransferase (EC 2.1.3.3)
Locus tag: swp_2058
Name: argG Funciton: Argininosuccinate synthase (EC 6.3.4.5)
Locus tag: swp_2059
Name: argH Funciton: Argininosuccinate lyase (EC 4.3.2.1) |
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argB
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Acetylglutamate kinase (EC 2.7.2.8)
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argF
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Ornithine carbamoyltransferase (EC 2.1.3.3)
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argG
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Argininosuccinate synthase (EC 6.3.4.5)
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argH
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Argininosuccinate lyase (EC 4.3.2.1)
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Position: -167
Score: 4 Sequence: ATTTCATTATTAGTCATC
Position: -135
Score: 4.6 Sequence: TGTGCATTTTGATGCAAA
Locus tag: swp_1743
Name: astB Funciton: Succinylarginine dihydrolase (EC 3.5.3.23) |
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astB
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Succinylarginine dihydrolase (EC 3.5.3.23)
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Position: -110
Score: 3.7 Sequence: AGTGATAATAAATGCTTT
Position: -89
Score: 5.4 Sequence: ATTGCATTAAAATGCAAT
Locus tag: swp_2207
Name: argA Funciton: N-acetylglutamate synthase (EC 2.3.1.1) |
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argA
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N-acetylglutamate synthase (EC 2.3.1.1)
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Position: -308
Score: 5 Sequence: GTTGAATTTTTACTCAAT
Position: -259
Score: 4 Sequence: GGTGAATATTAGTTAATT
Locus tag: swp_4207
Name: aprE2 Funciton: Cold-active alkaline serine protease (EC 3.4.21.62) |
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aprE2
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Cold-active alkaline serine protease (EC 3.4.21.62)
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Position: -292
Score: 4.4 Sequence: GATTAATTTAAATGCATC
Locus tag: swp_3001
Name: hisG Funciton: ATP phosphoribosyltransferase (EC 2.4.2.17)
Locus tag: swp_3003
Name: hisD Funciton: Histidinol dehydrogenase (EC 1.1.1.23)
Locus tag: swp_3004
Name: hisC Funciton: Histidinol-phosphate aminotransferase (EC 2.6.1.9)
Locus tag: swp_3005
Name: hisB Funciton: Histidinol-phosphatase (EC 3.1.3.15) / Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19)
Locus tag: swp_3006
Name: hisH Funciton: Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-)
Locus tag: swp_3007
Name: hisA Funciton: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16)
Locus tag: swp_3008
Name: hisF Funciton: Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-)
Locus tag: swp_3009
Name: hisI Funciton: Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) / Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) |
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hisG
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ATP phosphoribosyltransferase (EC 2.4.2.17)
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hisD
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Histidinol dehydrogenase (EC 1.1.1.23)
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hisC
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Histidinol-phosphate aminotransferase (EC 2.6.1.9)
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hisB
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Histidinol-phosphatase (EC 3.1.3.15) / Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19)
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hisH
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Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-)
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hisA
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Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16)
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hisF
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Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-)
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hisI
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Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) / Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31)
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Position: -143
Score: 3.4 Sequence: AATACTTAATAATTGAAC
Position: -27
Score: 4.5 Sequence: TTTGAATATATATTTAGG
Locus tag: swp_2054
Name: argE Funciton: Acetylornithine deacetylase (EC 3.5.1.16) |
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argE
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Acetylornithine deacetylase (EC 3.5.1.16)
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Position: -104
Score: 5 Sequence: TGTGAATACTTATTCACT
Locus tag: swp_2592
Name: SO2306 Funciton: Cell division protein FtsK |
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SO2306
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Cell division protein FtsK
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Position: -355
Score: 4.4 Sequence: TCTGCATAATTAGTCAAG
Position: -331
Score: 4.3 Sequence: AGTGACTATCATTTCACT
Position: -310
Score: 4.3 Sequence: TTTGCAATAAAAATCACT
Locus tag: swp_3803
Name: gltB Funciton: Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
Locus tag: swp_3804
Name: gltD Funciton: Glutamate synthase [NADPH] small chain (EC 1.4.1.13) |
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gltB
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Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
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gltD
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Glutamate synthase [NADPH] small chain (EC 1.4.1.13)
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Position: -612
Score: 4 Sequence: TGTGATTTTTAATGCCTC
Position: -393
Score: 3.7 Sequence: AGTTCATTTAATATCAAA
Locus tag: swp_2362
Name: omp(Arg) Funciton: TonB-dependent receptor |
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omp(Arg)
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TonB-dependent receptor
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Position: -157
Score: 3.6 Sequence: TATCAACAGAAATGCATA
Position: -136
Score: 4.4 Sequence: TGTGAATAAATAGTGATT
Locus tag: swp_1378
Name: oadG Funciton: Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3)
Locus tag: swp_1379
Name: oadA Funciton: Oxaloacetate decarboxylase, alpha chain (EC 4.1.1.3)
Locus tag: swp_1380
Name: oadB Funciton: Oxaloacetate decarboxylase, beta chain (EC 4.1.1.3) |
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oadG
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Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3)
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oadA
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Oxaloacetate decarboxylase, alpha chain (EC 4.1.1.3)
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oadB
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Oxaloacetate decarboxylase, beta chain (EC 4.1.1.3)
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Position: -95
Score: 5.3 Sequence: CATGAATTTTTATTCAAT
Locus tag: swp_4101
Name: argR Funciton: Arginine metabolism transcriptional regulator ArgR |
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argR
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Arginine metabolism transcriptional regulator ArgR
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Position: -189
Score: 4.2 Sequence: CGTGATTATTAAATCACA
Locus tag: swp_0359
Name: ilvG Funciton: Acetolactate synthase large subunit (EC 2.2.1.6)
Locus tag: swp_0360
Name: ilvM Funciton: Acetolactate synthase small subunit (EC 2.2.1.6)
Locus tag: swp_0361
Name: ilvE Funciton: Branched-chain amino acid aminotransferase (EC 2.6.1.42)
Locus tag: swp_0362
Name: ilvD Funciton: Dihydroxy-acid dehydratase (EC 4.2.1.9)
Locus tag: swp_0363
Name: ilvA Funciton: Threonine dehydratase biosynthetic (EC 4.3.1.19) |
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ilvG
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Acetolactate synthase large subunit (EC 2.2.1.6)
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ilvM
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Acetolactate synthase small subunit (EC 2.2.1.6)
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ilvE
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Branched-chain amino acid aminotransferase (EC 2.6.1.42)
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ilvD
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Dihydroxy-acid dehydratase (EC 4.2.1.9)
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ilvA
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Threonine dehydratase biosynthetic (EC 4.3.1.19)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |