Regulon of ArgR in Shewanella halifaxensis HAW-EB4
| Regulator type: | Transcription factor |
| TF locus tag: | Shal_0902 |
| Regulator family: | ArgR |
| Regulation mode: | repressor (activator) |
| Biological process: | Arginine degradation; Arginine biosynthesis |
| Effector: | Arginine |
| Regulog: | ArgR - Shewanellaceae |
| Statistics of regulated genes: | |
| - Genes | 32 |
| - Operons | 17 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By trascription factor - ArgR
- By TF family - ArgR
- By effector - Arginine
- By pathway - Arginine degradation
- By pathway - Arginine biosynthesis
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -91
Score: 4.9 Sequence: GTTGAATGGATATTCAAT
Locus tag: Shal_3114
Name: argW Funciton: Predicted arginine uptake transporter, COG3314 family |
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argW
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Predicted arginine uptake transporter, COG3314 family
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Position: -100
Score: 5.6 Sequence: AATGAATTTAAATGCACT
Locus tag: Shal_0432
Name: argA Funciton: N-acetylglutamate synthase (EC 2.3.1.1) |
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argA
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N-acetylglutamate synthase (EC 2.3.1.1)
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Position: -267
Score: 4.5 Sequence: CCTAAATATATATTCAAA
Locus tag: Shal_4093
Name: argC Funciton: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) |
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argC
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N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
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Position: -301
Score: 4.4 Sequence: TCAGCATTTAAATTCAAG
Position: -198
Score: 4.6 Sequence: TTTGAACTATTATTCAAC
Locus tag: Shal_0969
Name: aprE2 Funciton: Cold-active alkaline serine protease (EC 3.4.21.62) |
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aprE2
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Cold-active alkaline serine protease (EC 3.4.21.62)
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Position: -103
Score: 4.9 Sequence: TATGCATAACTATTCAGT
Locus tag: Shal_2217
Name: SO2306 Funciton: Cell division protein FtsK |
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SO2306
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Cell division protein FtsK
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Position: -242
Score: 4 Sequence: TATGACTATTTATGCTTA
Locus tag: Shal_3610
Name: astC Funciton: Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81)
Locus tag: Shal_3609
Name: astA Funciton: Arginine N-succinyltransferase (EC 2.3.1.109)
Locus tag: Shal_3608
Name: astD Funciton: Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71)
Locus tag: Shal_3607
Name: SO0620 Funciton: Conserved hypothetical protein |
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astC
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Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81)
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astA
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Arginine N-succinyltransferase (EC 2.3.1.109)
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astD
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Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71)
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SO0620
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Conserved hypothetical protein
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Position: -102
Score: 4.3 Sequence: TTTGCTTAAAAATTGATT
Position: -91
Score: 3.7 Sequence: ATTGATTTAATATTAGCT
Locus tag: Shal_0816
Name: Swoo_0949 Funciton: Peptidase U32 |
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Swoo_0949
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Peptidase U32
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Position: -155
Score: 4.4 Sequence: AACGCATAAAAATGCACC
Locus tag: Shal_0887
Name: SO0762 Funciton: Isochorismate hydrolase (EC 3.3.2.1) |
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SO0762
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Isochorismate hydrolase (EC 3.3.2.1)
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Position: -53
Score: 4.9 Sequence: AGTGCATAAAGATTCATT
Locus tag: Shal_4092
Name: argB Funciton: Acetylglutamate kinase (EC 2.7.2.8)
Locus tag: Shal_4091
Name: argF Funciton: Ornithine carbamoyltransferase (EC 2.1.3.3)
Locus tag: Shal_4090
Name: argG Funciton: Argininosuccinate synthase (EC 6.3.4.5)
Locus tag: Shal_4089
Name: argH Funciton: Argininosuccinate lyase (EC 4.3.2.1) |
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argB
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Acetylglutamate kinase (EC 2.7.2.8)
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argF
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Ornithine carbamoyltransferase (EC 2.1.3.3)
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argG
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Argininosuccinate synthase (EC 6.3.4.5)
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argH
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Argininosuccinate lyase (EC 4.3.2.1)
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Position: -169
Score: 4.1 Sequence: ATTTCATTAATAGTCATC
Position: -137
Score: 4.6 Sequence: TGTGCATTTTGATGCAAA
Locus tag: Shal_1604
Name: astB Funciton: Succinylarginine dihydrolase (EC 3.5.3.23) |
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astB
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Succinylarginine dihydrolase (EC 3.5.3.23)
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Position: -228
Score: 5.3 Sequence: AATGAATTATTATTCAAC
Position: -98
Score: 4.7 Sequence: CTTGAATTTTTAATCAAA
Locus tag: Shal_3484
Name: artI Funciton: Arginine ABC transporter, substrate-binding protein
Locus tag: Shal_3485
Name: artQ Funciton: Arginine ABC transporter, permease protein
Locus tag: Shal_3486
Name: artM Funciton: Arginine ABC transporter, ATP-binding protein |
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artI
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Arginine ABC transporter, substrate-binding protein
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artQ
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Arginine ABC transporter, permease protein
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artM
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Arginine ABC transporter, ATP-binding protein
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Position: -355
Score: 4.6 Sequence: TATGCATAAATAAGCAAA
Position: -331
Score: 3.8 Sequence: AGTGACTACCATTTCACT
Position: -310
Score: 4 Sequence: TCTGCAAGAAAAATCACT
Locus tag: Shal_1061
Name: gltB Funciton: Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
Locus tag: Shal_1060
Name: gltD Funciton: Glutamate synthase [NADPH] small chain (EC 1.4.1.13) |
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gltB
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Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
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gltD
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Glutamate synthase [NADPH] small chain (EC 1.4.1.13)
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Position: -122
Score: 3.8 Sequence: ATTGAACATATATACTCT
Position: -26
Score: 4.5 Sequence: TTTGAATATATATTTAGG
Locus tag: Shal_4094
Name: argE Funciton: Acetylornithine deacetylase (EC 3.5.1.16) |
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argE
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Acetylornithine deacetylase (EC 3.5.1.16)
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Position: -230
Score: 3.9 Sequence: CATGATATTTAATTCATC
Locus tag: Shal_1686
Name: SO2753 Funciton: Prolyl endopeptidase (EC 3.4.21.26) |
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SO2753
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Prolyl endopeptidase (EC 3.4.21.26)
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Position: -95
Score: 5.5 Sequence: AATGAATTTTTATTCACA
Locus tag: Shal_0902
Name: argR Funciton: Arginine metabolism transcriptional regulator ArgR |
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argR
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Arginine metabolism transcriptional regulator ArgR
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Position: -63
Score: 4.8 Sequence: GGTGAATATTTATTGAGT
Position: -43
Score: 4.1 Sequence: CATCCATGTTTATTCACA
Locus tag: Shal_1235
Name: oadG Funciton: Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3)
Locus tag: Shal_1236
Name: oadA Funciton: Oxaloacetate decarboxylase, alpha chain (EC 4.1.1.3)
Locus tag: Shal_1237
Name: oadB Funciton: Oxaloacetate decarboxylase, beta chain (EC 4.1.1.3) |
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oadG
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Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3)
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oadA
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Oxaloacetate decarboxylase, alpha chain (EC 4.1.1.3)
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oadB
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Oxaloacetate decarboxylase, beta chain (EC 4.1.1.3)
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Position: -193
Score: 4.2 Sequence: CGTGATTATTAAATCACA
Locus tag: Shal_3944
Name: ilvG Funciton: Acetolactate synthase large subunit (EC 2.2.1.6)
Locus tag: Shal_3943
Name: ilvM Funciton: Acetolactate synthase small subunit (EC 2.2.1.6)
Locus tag: Shal_3942
Name: ilvE Funciton: Branched-chain amino acid aminotransferase (EC 2.6.1.42)
Locus tag: Shal_3941
Name: ilvD Funciton: Dihydroxy-acid dehydratase (EC 4.2.1.9)
Locus tag: Shal_3940
Name: ilvA Funciton: Threonine dehydratase biosynthetic (EC 4.3.1.19) |
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ilvG
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Acetolactate synthase large subunit (EC 2.2.1.6)
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ilvM
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Acetolactate synthase small subunit (EC 2.2.1.6)
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ilvE
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Branched-chain amino acid aminotransferase (EC 2.6.1.42)
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ilvD
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Dihydroxy-acid dehydratase (EC 4.2.1.9)
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ilvA
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Threonine dehydratase biosynthetic (EC 4.3.1.19)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |