Regulon of ArgR in Shewanella pealeana ATCC 700345

Properties
Regulator type:	Transcription factor
TF locus tag:	Spea_0849
Regulator family:	ArgR
Regulation mode:	repressor (activator)
Biological process:	Arginine degradation; Arginine biosynthesis
Effector:	Arginine
Regulog:	ArgR - Shewanellaceae
Statistics of regulated genes:
- Genes	34
- Operons	19
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 502 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By trascription factor - ArgR
By TF family - ArgR
By effector - Arginine
By pathway - Arginine degradation
By pathway - Arginine biosynthesis

Regulated operons
	Locus Tag	Name	Function
Position: -266 Score: 3.8 Sequence: CCCAAATATATATTCAAA Locus tag: Spea_0227 Name: argC Funciton: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
	Spea_0227	argC	N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
Position: -137 Score: 5 Sequence: TGTGCATTTCAATTCAAA Locus tag: Spea_1534 Name: astB Funciton: Succinylarginine dihydrolase (EC 3.5.3.23)
	Spea_1534	astB	Succinylarginine dihydrolase (EC 3.5.3.23)
Position: -281 Score: 3.7 Sequence: CGTGAATAACTAGTAATT Position: -242 Score: 4 Sequence: TGTGACTATTTATGCTTA Locus tag: Spea_3516 Name: astC Funciton: Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81) Locus tag: Spea_3515 Name: astA Funciton: Arginine N-succinyltransferase (EC 2.3.1.109) Locus tag: Spea_3514 Name: astD Funciton: Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71) Locus tag: Spea_3513 Name: SO0620 Funciton: Conserved hypothetical protein
	Spea_3516	astC	Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81)
	Spea_3515	astA	Arginine N-succinyltransferase (EC 2.3.1.109)
	Spea_3514	astD	Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71)
	Spea_3513	SO0620	Conserved hypothetical protein
Position: -256 Score: 4.2 Sequence: ATTGCCAATACATTCAAA Locus tag: Spea_2300 Name: aprE2 Funciton: Cold-active alkaline serine protease (EC 3.4.21.62)
	Spea_2300	aprE2	Cold-active alkaline serine protease (EC 3.4.21.62)
Position: -56 Score: 4.9 Sequence: AGTGCATAAAGATTCACT Locus tag: Spea_0228 Name: argB Funciton: Acetylglutamate kinase (EC 2.7.2.8) Locus tag: Spea_0229 Name: argF Funciton: Ornithine carbamoyltransferase (EC 2.1.3.3) Locus tag: Spea_0230 Name: argG Funciton: Argininosuccinate synthase (EC 6.3.4.5) Locus tag: Spea_0231 Name: argH Funciton: Argininosuccinate lyase (EC 4.3.2.1)
	Spea_0228	argB	Acetylglutamate kinase (EC 2.7.2.8)
	Spea_0229	argF	Ornithine carbamoyltransferase (EC 2.1.3.3)
	Spea_0230	argG	Argininosuccinate synthase (EC 6.3.4.5)
	Spea_0231	argH	Argininosuccinate lyase (EC 4.3.2.1)
Position: -198 Score: 4.8 Sequence: TTTGAACTAATATTCAGT Locus tag: Spea_0917 Name: aprE2 Funciton: Cold-active alkaline serine protease (EC 3.4.21.62)
	Spea_0917	aprE2	Cold-active alkaline serine protease (EC 3.4.21.62)
Position: -101 Score: 4.2 Sequence: GTTGCTTAAAAATTGATT Locus tag: Spea_0764 Name: Swoo_0949 Funciton: Peptidase U32
	Spea_0764	Swoo_0949	Peptidase U32
Position: -120 Score: 4.3 Sequence: AGTGAAAATAAATGCTTT Position: -99 Score: 5.6 Sequence: AATGAATTTAAATGCAAT Position: -34 Score: 4.4 Sequence: GGTGAATATCTATTTATT Locus tag: Spea_3834 Name: argA Funciton: N-acetylglutamate synthase (EC 2.3.1.1)
	Spea_3834	argA	N-acetylglutamate synthase (EC 2.3.1.1)
Position: -27 Score: 3.8 Sequence: TTTGAATATATATTTGGG Locus tag: Spea_0226 Name: argE Funciton: Acetylornithine deacetylase (EC 3.5.1.16)
	Spea_0226	argE	Acetylornithine deacetylase (EC 3.5.1.16)
Position: -152 Score: 4.9 Sequence: CGTGCATATAAATGCACC Locus tag: Spea_0832 Name: SO0762 Funciton: Isochorismate hydrolase (EC 3.3.2.1)
	Spea_0832	SO0762	Isochorismate hydrolase (EC 3.3.2.1)
Position: -104 Score: 5.4 Sequence: GGTGAATAAATATTCAGT Locus tag: Spea_2233 Name: SO2306 Funciton: Cell division protein FtsK
	Spea_2233	SO2306	Cell division protein FtsK
Position: -93 Score: 4.9 Sequence: GTTGAATGGATATTCAAT Locus tag: Spea_3024 Name: argW Funciton: Predicted arginine uptake transporter, COG3314 family
	Spea_3024	argW	Predicted arginine uptake transporter, COG3314 family
Position: -188 Score: 4 Sequence: TATGCATTATGATTCTGT Locus tag: Spea_2361 Name: omp(Arg) Funciton: TonB-dependent receptor
	Spea_2361	omp(Arg)	TonB-dependent receptor
Position: -354 Score: 4.9 Sequence: AATGCATAAATAGTCACA Position: -330 Score: 4.3 Sequence: AGTGATTATCATTTCACT Position: -309 Score: 4.3 Sequence: TCTGCAAAAAAAATCACT Locus tag: Spea_1013 Name: gltB Funciton: Glutamate synthase [NADPH] large chain (EC 1.4.1.13) Locus tag: Spea_1012 Name: gltD Funciton: Glutamate synthase [NADPH] small chain (EC 1.4.1.13)
	Spea_1013	gltB	Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
	Spea_1012	gltD	Glutamate synthase [NADPH] small chain (EC 1.4.1.13)
Position: -297 Score: 4.2 Sequence: ATTGAATAAAGATGAACT Position: -215 Score: 3.9 Sequence: CATGATATTTAATTCATC Locus tag: Spea_2569 Name: SO2753 Funciton: Prolyl endopeptidase (EC 3.4.21.26)
	Spea_2569	SO2753	Prolyl endopeptidase (EC 3.4.21.26)
Position: -73 Score: 4.2 Sequence: TGTGAATGAATAGTGAAT Position: -62 Score: 4.1 Sequence: AGTGAATATTTATTTTTA Locus tag: Spea_1198 Name: oadG Funciton: Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3) Locus tag: Spea_1199 Name: oadA Funciton: Oxaloacetate decarboxylase, alpha chain (EC 4.1.1.3) Locus tag: Spea_1200 Name: oadB Funciton: Oxaloacetate decarboxylase, beta chain (EC 4.1.1.3)
	Spea_1198	oadG	Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3)
	Spea_1199	oadA	Oxaloacetate decarboxylase, alpha chain (EC 4.1.1.3)
	Spea_1200	oadB	Oxaloacetate decarboxylase, beta chain (EC 4.1.1.3)
Position: -95 Score: 5.5 Sequence: AATGAATTTTTATTCAGA Locus tag: Spea_0849 Name: argR Funciton: Arginine metabolism transcriptional regulator ArgR
	Spea_0849	argR	Arginine metabolism transcriptional regulator ArgR
Position: -239 Score: 4.7 Sequence: AGTACATATTTATTCACA Position: -98 Score: 4.3 Sequence: ATCGAATTTTTACGCATT Position: -77 Score: 4.1 Sequence: GATGCATAAGTATTGATT Position: -51 Score: 4 Sequence: TATCAGTTTATAGTCAAT Locus tag: Spea_3397 Name: artI Funciton: Arginine ABC transporter, substrate-binding protein Locus tag: Spea_3398 Name: artQ Funciton: Arginine ABC transporter, permease protein Locus tag: Spea_3399 Name: artM Funciton: Arginine ABC transporter, ATP-binding protein
	Spea_3397	artI	Arginine ABC transporter, substrate-binding protein
	Spea_3398	artQ	Arginine ABC transporter, permease protein
	Spea_3399	artM	Arginine ABC transporter, ATP-binding protein
Position: -181 Score: 4.2 Sequence: CGTGATTATTAAATCACA Locus tag: Spea_0345 Name: ilvG Funciton: Acetolactate synthase large subunit (EC 2.2.1.6) Locus tag: Spea_0346 Name: ilvM Funciton: Acetolactate synthase small subunit (EC 2.2.1.6) Locus tag: Spea_0347 Name: ilvE Funciton: Branched-chain amino acid aminotransferase (EC 2.6.1.42) Locus tag: Spea_0348 Name: ilvD Funciton: Dihydroxy-acid dehydratase (EC 4.2.1.9) Locus tag: Spea_0349 Name: ilvA Funciton: Threonine dehydratase biosynthetic (EC 4.3.1.19)
	Spea_0345	ilvG	Acetolactate synthase large subunit (EC 2.2.1.6)
	Spea_0346	ilvM	Acetolactate synthase small subunit (EC 2.2.1.6)
	Spea_0347	ilvE	Branched-chain amino acid aminotransferase (EC 2.6.1.42)
	Spea_0348	ilvD	Dihydroxy-acid dehydratase (EC 4.2.1.9)
	Spea_0349	ilvA	Threonine dehydratase biosynthetic (EC 4.3.1.19)

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of ArgR in Shewanella pealeana ATCC 700345

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --