Regulon of ArgR in Shewanella pealeana ATCC 700345
| Regulator type: | Transcription factor |
| TF locus tag: | Spea_0849 |
| Regulator family: | ArgR |
| Regulation mode: | repressor (activator) |
| Biological process: | Arginine degradation; Arginine biosynthesis |
| Effector: | Arginine |
| Regulog: | ArgR - Shewanellaceae |
| Statistics of regulated genes: | |
| - Genes | 34 |
| - Operons | 19 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By trascription factor - ArgR
- By TF family - ArgR
- By effector - Arginine
- By pathway - Arginine degradation
- By pathway - Arginine biosynthesis
| Locus Tag | Name | Function | |
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Position: -266
Score: 3.8 Sequence: CCCAAATATATATTCAAA
Locus tag: Spea_0227
Name: argC Funciton: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) |
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argC
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N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
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Position: -137
Score: 5 Sequence: TGTGCATTTCAATTCAAA
Locus tag: Spea_1534
Name: astB Funciton: Succinylarginine dihydrolase (EC 3.5.3.23) |
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astB
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Succinylarginine dihydrolase (EC 3.5.3.23)
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Position: -281
Score: 3.7 Sequence: CGTGAATAACTAGTAATT
Position: -242
Score: 4 Sequence: TGTGACTATTTATGCTTA
Locus tag: Spea_3516
Name: astC Funciton: Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81)
Locus tag: Spea_3515
Name: astA Funciton: Arginine N-succinyltransferase (EC 2.3.1.109)
Locus tag: Spea_3514
Name: astD Funciton: Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71)
Locus tag: Spea_3513
Name: SO0620 Funciton: Conserved hypothetical protein |
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astC
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Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81)
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astA
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Arginine N-succinyltransferase (EC 2.3.1.109)
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astD
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Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71)
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SO0620
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Conserved hypothetical protein
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Position: -256
Score: 4.2 Sequence: ATTGCCAATACATTCAAA
Locus tag: Spea_2300
Name: aprE2 Funciton: Cold-active alkaline serine protease (EC 3.4.21.62) |
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aprE2
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Cold-active alkaline serine protease (EC 3.4.21.62)
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Position: -56
Score: 4.9 Sequence: AGTGCATAAAGATTCACT
Locus tag: Spea_0228
Name: argB Funciton: Acetylglutamate kinase (EC 2.7.2.8)
Locus tag: Spea_0229
Name: argF Funciton: Ornithine carbamoyltransferase (EC 2.1.3.3)
Locus tag: Spea_0230
Name: argG Funciton: Argininosuccinate synthase (EC 6.3.4.5)
Locus tag: Spea_0231
Name: argH Funciton: Argininosuccinate lyase (EC 4.3.2.1) |
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argB
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Acetylglutamate kinase (EC 2.7.2.8)
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argF
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Ornithine carbamoyltransferase (EC 2.1.3.3)
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argG
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Argininosuccinate synthase (EC 6.3.4.5)
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argH
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Argininosuccinate lyase (EC 4.3.2.1)
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Position: -198
Score: 4.8 Sequence: TTTGAACTAATATTCAGT
Locus tag: Spea_0917
Name: aprE2 Funciton: Cold-active alkaline serine protease (EC 3.4.21.62) |
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aprE2
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Cold-active alkaline serine protease (EC 3.4.21.62)
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Position: -101
Score: 4.2 Sequence: GTTGCTTAAAAATTGATT
Locus tag: Spea_0764
Name: Swoo_0949 Funciton: Peptidase U32 |
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Swoo_0949
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Peptidase U32
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Position: -120
Score: 4.3 Sequence: AGTGAAAATAAATGCTTT
Position: -99
Score: 5.6 Sequence: AATGAATTTAAATGCAAT
Position: -34
Score: 4.4 Sequence: GGTGAATATCTATTTATT
Locus tag: Spea_3834
Name: argA Funciton: N-acetylglutamate synthase (EC 2.3.1.1) |
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argA
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N-acetylglutamate synthase (EC 2.3.1.1)
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Position: -27
Score: 3.8 Sequence: TTTGAATATATATTTGGG
Locus tag: Spea_0226
Name: argE Funciton: Acetylornithine deacetylase (EC 3.5.1.16) |
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argE
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Acetylornithine deacetylase (EC 3.5.1.16)
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Position: -152
Score: 4.9 Sequence: CGTGCATATAAATGCACC
Locus tag: Spea_0832
Name: SO0762 Funciton: Isochorismate hydrolase (EC 3.3.2.1) |
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SO0762
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Isochorismate hydrolase (EC 3.3.2.1)
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Position: -104
Score: 5.4 Sequence: GGTGAATAAATATTCAGT
Locus tag: Spea_2233
Name: SO2306 Funciton: Cell division protein FtsK |
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SO2306
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Cell division protein FtsK
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Position: -93
Score: 4.9 Sequence: GTTGAATGGATATTCAAT
Locus tag: Spea_3024
Name: argW Funciton: Predicted arginine uptake transporter, COG3314 family |
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argW
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Predicted arginine uptake transporter, COG3314 family
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Position: -188
Score: 4 Sequence: TATGCATTATGATTCTGT
Locus tag: Spea_2361
Name: omp(Arg) Funciton: TonB-dependent receptor |
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omp(Arg)
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TonB-dependent receptor
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Position: -354
Score: 4.9 Sequence: AATGCATAAATAGTCACA
Position: -330
Score: 4.3 Sequence: AGTGATTATCATTTCACT
Position: -309
Score: 4.3 Sequence: TCTGCAAAAAAAATCACT
Locus tag: Spea_1013
Name: gltB Funciton: Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
Locus tag: Spea_1012
Name: gltD Funciton: Glutamate synthase [NADPH] small chain (EC 1.4.1.13) |
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gltB
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Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
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gltD
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Glutamate synthase [NADPH] small chain (EC 1.4.1.13)
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Position: -297
Score: 4.2 Sequence: ATTGAATAAAGATGAACT
Position: -215
Score: 3.9 Sequence: CATGATATTTAATTCATC
Locus tag: Spea_2569
Name: SO2753 Funciton: Prolyl endopeptidase (EC 3.4.21.26) |
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SO2753
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Prolyl endopeptidase (EC 3.4.21.26)
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Position: -73
Score: 4.2 Sequence: TGTGAATGAATAGTGAAT
Position: -62
Score: 4.1 Sequence: AGTGAATATTTATTTTTA
Locus tag: Spea_1198
Name: oadG Funciton: Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3)
Locus tag: Spea_1199
Name: oadA Funciton: Oxaloacetate decarboxylase, alpha chain (EC 4.1.1.3)
Locus tag: Spea_1200
Name: oadB Funciton: Oxaloacetate decarboxylase, beta chain (EC 4.1.1.3) |
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oadG
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Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3)
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oadA
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Oxaloacetate decarboxylase, alpha chain (EC 4.1.1.3)
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oadB
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Oxaloacetate decarboxylase, beta chain (EC 4.1.1.3)
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Position: -95
Score: 5.5 Sequence: AATGAATTTTTATTCAGA
Locus tag: Spea_0849
Name: argR Funciton: Arginine metabolism transcriptional regulator ArgR |
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argR
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Arginine metabolism transcriptional regulator ArgR
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Position: -239
Score: 4.7 Sequence: AGTACATATTTATTCACA
Position: -98
Score: 4.3 Sequence: ATCGAATTTTTACGCATT
Position: -77
Score: 4.1 Sequence: GATGCATAAGTATTGATT
Position: -51
Score: 4 Sequence: TATCAGTTTATAGTCAAT
Locus tag: Spea_3397
Name: artI Funciton: Arginine ABC transporter, substrate-binding protein
Locus tag: Spea_3398
Name: artQ Funciton: Arginine ABC transporter, permease protein
Locus tag: Spea_3399
Name: artM Funciton: Arginine ABC transporter, ATP-binding protein |
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artI
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Arginine ABC transporter, substrate-binding protein
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artQ
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Arginine ABC transporter, permease protein
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artM
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Arginine ABC transporter, ATP-binding protein
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Position: -181
Score: 4.2 Sequence: CGTGATTATTAAATCACA
Locus tag: Spea_0345
Name: ilvG Funciton: Acetolactate synthase large subunit (EC 2.2.1.6)
Locus tag: Spea_0346
Name: ilvM Funciton: Acetolactate synthase small subunit (EC 2.2.1.6)
Locus tag: Spea_0347
Name: ilvE Funciton: Branched-chain amino acid aminotransferase (EC 2.6.1.42)
Locus tag: Spea_0348
Name: ilvD Funciton: Dihydroxy-acid dehydratase (EC 4.2.1.9)
Locus tag: Spea_0349
Name: ilvA Funciton: Threonine dehydratase biosynthetic (EC 4.3.1.19) |
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ilvG
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Acetolactate synthase large subunit (EC 2.2.1.6)
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ilvM
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Acetolactate synthase small subunit (EC 2.2.1.6)
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ilvE
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Branched-chain amino acid aminotransferase (EC 2.6.1.42)
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ilvD
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Dihydroxy-acid dehydratase (EC 4.2.1.9)
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ilvA
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Threonine dehydratase biosynthetic (EC 4.3.1.19)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |