Regulon of ArgR in Shewanella sp ANA-3

Properties
Regulator type:	Transcription factor
TF locus tag:	Shewana3_3510
Regulator family:	ArgR
Regulation mode:	repressor (activator)
Biological process:	Arginine degradation; Arginine biosynthesis
Effector:	Arginine
Regulog:	ArgR - Shewanellaceae
Statistics of regulated genes:
- Genes	41
- Operons	24
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 502 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By trascription factor - ArgR
By TF family - ArgR
By effector - Arginine
By pathway - Arginine degradation
By pathway - Arginine biosynthesis

Regulated operons
	Locus Tag	Name	Function
Position: -60 Score: 4.9 Sequence: AATGCATAAAGATTCACT Locus tag: Shewana3_3904 Name: argB Funciton: Acetylglutamate kinase (EC 2.7.2.8) Locus tag: Shewana3_3903 Name: argF Funciton: Ornithine carbamoyltransferase (EC 2.1.3.3) Locus tag: Shewana3_3902 Name: argG Funciton: Argininosuccinate synthase (EC 6.3.4.5) Locus tag: Shewana3_3901 Name: argH Funciton: Argininosuccinate lyase (EC 4.3.2.1)
	Shewana3_3904	argB	Acetylglutamate kinase (EC 2.7.2.8)
	Shewana3_3903	argF	Ornithine carbamoyltransferase (EC 2.1.3.3)
	Shewana3_3902	argG	Argininosuccinate synthase (EC 6.3.4.5)
	Shewana3_3901	argH	Argininosuccinate lyase (EC 4.3.2.1)
Position: -206 Score: 4.5 Sequence: GATGAATGTTTATTGAGT Position: -61 Score: 4.8 Sequence: ACTGAATAAATATTAAAA Locus tag: Shewana3_1690 Name: SO1915 Funciton: Serine protease, subtilase family
	Shewana3_1690	SO1915	Serine protease, subtilase family
Position: -84 Score: 4.5 Sequence: TTTGAACAAACATTCAAA Position: -60 Score: 3.9 Sequence: CTTGAATGATCGTTCAAA Position: -33 Score: 4 Sequence: CTTGAATGCACATTCAAG Locus tag: Shewana3_1159 Name: SO3392 Funciton: NADH-dependent flavin oxidoreductase, Oye family
	Shewana3_1159	SO3392	NADH-dependent flavin oxidoreductase, Oye family
Position: -357 Score: 3.7 Sequence: ACTGATTTTTCAGTCTTT Position: -327 Score: 4.4 Sequence: ACTGAGTTATTAAGCAGT Position: -249 Score: 4 Sequence: TAAAAATATATATTCACA Locus tag: Shewana3_3905 Name: argC Funciton: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
	Shewana3_3905	argC	N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
Position: -106 Score: 4.2 Sequence: TTTAAATTCACATTCAGT Locus tag: Shewana3_4118 Name: SO4732 Funciton: Conserved hypothetical protein
	Shewana3_4118	SO4732	Conserved hypothetical protein
Position: -99 Score: 4.9 Sequence: GTTGAATGAAAATGCACC Locus tag: Shewana3_1062 Name: argW Funciton: Predicted arginine uptake transporter, COG3314 family
	Shewana3_1062	argW	Predicted arginine uptake transporter, COG3314 family
Position: -227 Score: 4 Sequence: AGTCACTTTTTAATCAAA Position: -132 Score: 3.6 Sequence: TATGCATTTATCGTGAAA Position: -40 Score: 4.1 Sequence: TTTGAATAAATAATAACC Locus tag: Shewana3_1728 Name: astB Funciton: Succinylarginine dihydrolase (EC 3.5.3.23)
	Shewana3_1728	astB	Succinylarginine dihydrolase (EC 3.5.3.23)
Position: -190 Score: 4.7 Sequence: CATGAGTATTTATTCATT Locus tag: Shewana3_1443 Name: aprE Funciton: Alkaline serine protease
	Shewana3_1443	aprE	Alkaline serine protease
Position: -289 Score: 5.1 Sequence: TTTGAATTTGTATTCAAT Locus tag: Shewana3_0264 Name: mcp(Arg) Funciton: Methyl-accepting chemotaxis protein
	Shewana3_0264	mcp(Arg)	Methyl-accepting chemotaxis protein
Position: -141 Score: 4.3 Sequence: TTTGAAAATATAAGCACT Position: -79 Score: 5.4 Sequence: GGTGAATTAAAATGCAAT Locus tag: Shewana3_3767 Name: argA Funciton: N-acetylglutamate synthase (EC 2.3.1.1)
	Shewana3_3767	argA	N-acetylglutamate synthase (EC 2.3.1.1)
Position: -268 Score: 5.2 Sequence: TATGCATATTAATTCAGA Locus tag: Shewana3_1795 Name: SO1443 Funciton: Conserved hypothetical protein
	Shewana3_1795	SO1443	Conserved hypothetical protein
Position: -376 Score: 3.9 Sequence: TTTGAAATCCCATTCAAT Position: -164 Score: 4.2 Sequence: ACTGCTTGTTAATGCAAG Locus tag: Shewana3_3097 Name: potF Funciton: Putrescine ABC transporter, substrate-binding protein (TC 3.A.1.11.2) Locus tag: Shewana3_3096 Name: potG Funciton: Putrescine ABC transporter, ATP-binding protein (TC 3.A.1.11.2) Locus tag: Shewana3_3095 Name: potH Funciton: Putrescine ABC transporter, permease protein 1 (TC 3.A.1.11.2) Locus tag: Shewana3_3094 Name: potI Funciton: Putrescine ABC transporter, permease protein 2 (TC 3.A.1.11.2)
	Shewana3_3097	potF	Putrescine ABC transporter, substrate-binding protein (TC 3.A.1.11.2)
	Shewana3_3096	potG	Putrescine ABC transporter, ATP-binding protein (TC 3.A.1.11.2)
	Shewana3_3095	potH	Putrescine ABC transporter, permease protein 1 (TC 3.A.1.11.2)
	Shewana3_3094	potI	Putrescine ABC transporter, permease protein 2 (TC 3.A.1.11.2)
Position: -25 Score: 4.7 Sequence: AATGAAAATAAATTCAGG Locus tag: Shewana3_2487 Name: ggt2 Funciton: Gamma-glutamyltranspeptidase (EC 2.3.2.2)
	Shewana3_2487	ggt2	Gamma-glutamyltranspeptidase (EC 2.3.2.2)
Position: -742 Score: 5.3 Sequence: TCTGCATTTTTATTCAAA Locus tag: Shewana3_3871 Name: speF Funciton: Ornithine decarboxylase (EC 4.1.1.17) Locus tag: Shewana3_3872 Name: potE Funciton: Putrescine/proton symporter, putrescine/ornithine antiporter PotE Locus tag: Shewana3_3873 Name: SO0312 Funciton: Predicted outer membrane porin
	Shewana3_3871	speF	Ornithine decarboxylase (EC 4.1.1.17)
	Shewana3_3872	potE	Putrescine/proton symporter, putrescine/ornithine antiporter PotE
	Shewana3_3873	SO0312	Predicted outer membrane porin
Position: -209 Score: 4.2 Sequence: ATTGAATTTTTATTGGTA Position: -165 Score: 5.3 Sequence: AGTGAATGAAAATTCAGA Locus tag: Shewana3_3292 Name: pbpG Funciton: D-alanyl-D-alanine endopeptidase
	Shewana3_3292	pbpG	D-alanyl-D-alanine endopeptidase
Position: -201 Score: 4.5 Sequence: AGTGATTATTAAATCACA Locus tag: Shewana3_0356 Name: ilvG Funciton: Acetolactate synthase large subunit (EC 2.2.1.6) Locus tag: Shewana3_0357 Name: ilvM Funciton: Acetolactate synthase small subunit (EC 2.2.1.6) Locus tag: Shewana3_0358 Name: ilvD Funciton: Dihydroxy-acid dehydratase (EC 4.2.1.9) Locus tag: Shewana3_0359 Name: ilvA Funciton: Threonine dehydratase biosynthetic (EC 4.3.1.19)
	Shewana3_0356	ilvG	Acetolactate synthase large subunit (EC 2.2.1.6)
	Shewana3_0357	ilvM	Acetolactate synthase small subunit (EC 2.2.1.6)
	Shewana3_0358	ilvD	Dihydroxy-acid dehydratase (EC 4.2.1.9)
	Shewana3_0359	ilvA	Threonine dehydratase biosynthetic (EC 4.3.1.19)
Position: -307 Score: 4.1 Sequence: ATTGTGTAGTTATTCATA Position: -247 Score: 4 Sequence: TCTGACTAAATATGCTAA Locus tag: Shewana3_0610 Name: astC Funciton: Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81) Locus tag: Shewana3_0611 Name: astA Funciton: Arginine N-succinyltransferase (EC 2.3.1.109) Locus tag: Shewana3_0612 Name: astD Funciton: Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71) Locus tag: Shewana3_0613 Name: SO0620 Funciton: Conserved hypothetical protein
	Shewana3_0610	astC	Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81)
	Shewana3_0611	astA	Arginine N-succinyltransferase (EC 2.3.1.109)
	Shewana3_0612	astD	Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71)
	Shewana3_0613	SO0620	Conserved hypothetical protein
Position: -468 Score: 3.9 Sequence: AATCACAATTTATTCATT Position: -384 Score: 3.8 Sequence: TATGCATATTTCTCCATA Position: -106 Score: 3.6 Sequence: ACTGAATGAAAGTGAATC Locus tag: Shewana3_1958 Name: omp(Arg) Funciton: TonB-dependent receptor
	Shewana3_1958	omp(Arg)	TonB-dependent receptor
Position: -360 Score: 4.5 Sequence: ATAGAATAACAATTCATT Position: -339 Score: 4 Sequence: TATAAATTTTTATACATC Position: -314 Score: 4.3 Sequence: TTTGCAATAAAAATCACT Locus tag: Shewana3_3050 Name: gltB Funciton: Glutamate synthase [NADPH] large chain (EC 1.4.1.13) Locus tag: Shewana3_3051 Name: gltD Funciton: Glutamate synthase [NADPH] small chain (EC 1.4.1.13)
	Shewana3_3050	gltB	Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
	Shewana3_3051	gltD	Glutamate synthase [NADPH] small chain (EC 1.4.1.13)
Position: -71 Score: 5.1 Sequence: ACTGTATATAAATTCAGT Position: -49 Score: 3.7 Sequence: ACTGTTTATCAATACAGT Locus tag: Shewana3_1104 Name: recN Funciton: DNA repair protein RecN
	Shewana3_1104	recN	DNA repair protein RecN
Position: -93 Score: 5.5 Sequence: ATTGCATTTTTATTCAGT Locus tag: Shewana3_3510 Name: argR Funciton: Arginine metabolism transcriptional regulator ArgR
	Shewana3_3510	argR	Arginine metabolism transcriptional regulator ArgR
Position: -444 Score: 4.1 Sequence: AATGCATTTGCAATCAAC Position: -172 Score: 5 Sequence: AATGCATAAAAATACACT Locus tag: Shewana3_2536 Name: SO2753 Funciton: Prolyl endopeptidase (EC 3.4.21.26)
	Shewana3_2536	SO2753	Prolyl endopeptidase (EC 3.4.21.26)
Position: -254 Score: 4.4 Sequence: AATGAATAAAAAATGATA Position: -97 Score: 4.8 Sequence: TATGCATTTTTAATCATT Position: -76 Score: 4 Sequence: AAAGCATAATTATTGAAA Locus tag: Shewana3_0882 Name: artI Funciton: Arginine ABC transporter, substrate-binding protein Locus tag: Shewana3_0881 Name: artQ Funciton: Arginine ABC transporter, permease protein Locus tag: Shewana3_0880 Name: artM Funciton: Arginine ABC transporter, ATP-binding protein
	Shewana3_0882	artI	Arginine ABC transporter, substrate-binding protein
	Shewana3_0881	artQ	Arginine ABC transporter, permease protein
	Shewana3_0880	artM	Arginine ABC transporter, ATP-binding protein
Position: -234 Score: 3.9 Sequence: ATTGATTTTAAATAAATA Position: -195 Score: 4.1 Sequence: ACCGATTAAAAATGCACC Locus tag: Shewana3_3533 Name: SO0762 Funciton: Isochorismate hydrolase (EC 3.3.2.1)
	Shewana3_3533	SO0762	Isochorismate hydrolase (EC 3.3.2.1)

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of ArgR in Shewanella sp ANA-3

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --