Regulon of ArgR in Shewanella sp ANA-3
| Regulator type: | Transcription factor |
| TF locus tag: | Shewana3_3510 |
| Regulator family: | ArgR |
| Regulation mode: | repressor (activator) |
| Biological process: | Arginine degradation; Arginine biosynthesis |
| Effector: | Arginine |
| Regulog: | ArgR - Shewanellaceae |
| Statistics of regulated genes: | |
| - Genes | 41 |
| - Operons | 24 |
| Visualization: | |
|
Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By trascription factor - ArgR
- By TF family - ArgR
- By effector - Arginine
- By pathway - Arginine degradation
- By pathway - Arginine biosynthesis
| Locus Tag | Name | Function | |
|---|---|---|---|
|
Position: -60
Score: 4.9 Sequence: AATGCATAAAGATTCACT
Locus tag: Shewana3_3904
Name: argB Funciton: Acetylglutamate kinase (EC 2.7.2.8)
Locus tag: Shewana3_3903
Name: argF Funciton: Ornithine carbamoyltransferase (EC 2.1.3.3)
Locus tag: Shewana3_3902
Name: argG Funciton: Argininosuccinate synthase (EC 6.3.4.5)
Locus tag: Shewana3_3901
Name: argH Funciton: Argininosuccinate lyase (EC 4.3.2.1) |
|||
|
argB
|
Acetylglutamate kinase (EC 2.7.2.8)
|
||
|
argF
|
Ornithine carbamoyltransferase (EC 2.1.3.3)
|
||
|
argG
|
Argininosuccinate synthase (EC 6.3.4.5)
|
||
|
argH
|
Argininosuccinate lyase (EC 4.3.2.1)
|
||
|
Position: -206
Score: 4.5 Sequence: GATGAATGTTTATTGAGT
Position: -61
Score: 4.8 Sequence: ACTGAATAAATATTAAAA
Locus tag: Shewana3_1690
Name: SO1915 Funciton: Serine protease, subtilase family |
|||
|
SO1915
|
Serine protease, subtilase family
|
||
|
Position: -84
Score: 4.5 Sequence: TTTGAACAAACATTCAAA
Position: -60
Score: 3.9 Sequence: CTTGAATGATCGTTCAAA
Position: -33
Score: 4 Sequence: CTTGAATGCACATTCAAG
Locus tag: Shewana3_1159
Name: SO3392 Funciton: NADH-dependent flavin oxidoreductase, Oye family |
|||
|
SO3392
|
NADH-dependent flavin oxidoreductase, Oye family
|
||
|
Position: -357
Score: 3.7 Sequence: ACTGATTTTTCAGTCTTT
Position: -327
Score: 4.4 Sequence: ACTGAGTTATTAAGCAGT
Position: -249
Score: 4 Sequence: TAAAAATATATATTCACA
Locus tag: Shewana3_3905
Name: argC Funciton: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) |
|||
|
argC
|
N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
|
||
|
Position: -106
Score: 4.2 Sequence: TTTAAATTCACATTCAGT
Locus tag: Shewana3_4118
Name: SO4732 Funciton: Conserved hypothetical protein |
|||
|
SO4732
|
Conserved hypothetical protein
|
||
|
Position: -99
Score: 4.9 Sequence: GTTGAATGAAAATGCACC
Locus tag: Shewana3_1062
Name: argW Funciton: Predicted arginine uptake transporter, COG3314 family |
|||
|
argW
|
Predicted arginine uptake transporter, COG3314 family
|
||
|
Position: -227
Score: 4 Sequence: AGTCACTTTTTAATCAAA
Position: -132
Score: 3.6 Sequence: TATGCATTTATCGTGAAA
Position: -40
Score: 4.1 Sequence: TTTGAATAAATAATAACC
Locus tag: Shewana3_1728
Name: astB Funciton: Succinylarginine dihydrolase (EC 3.5.3.23) |
|||
|
astB
|
Succinylarginine dihydrolase (EC 3.5.3.23)
|
||
|
Position: -190
Score: 4.7 Sequence: CATGAGTATTTATTCATT
Locus tag: Shewana3_1443
Name: aprE Funciton: Alkaline serine protease |
|||
|
aprE
|
Alkaline serine protease
|
||
|
Position: -289
Score: 5.1 Sequence: TTTGAATTTGTATTCAAT
Locus tag: Shewana3_0264
Name: mcp(Arg) Funciton: Methyl-accepting chemotaxis protein |
|||
|
mcp(Arg)
|
Methyl-accepting chemotaxis protein
|
||
|
Position: -141
Score: 4.3 Sequence: TTTGAAAATATAAGCACT
Position: -79
Score: 5.4 Sequence: GGTGAATTAAAATGCAAT
Locus tag: Shewana3_3767
Name: argA Funciton: N-acetylglutamate synthase (EC 2.3.1.1) |
|||
|
argA
|
N-acetylglutamate synthase (EC 2.3.1.1)
|
||
|
Position: -268
Score: 5.2 Sequence: TATGCATATTAATTCAGA
Locus tag: Shewana3_1795
Name: SO1443 Funciton: Conserved hypothetical protein |
|||
|
SO1443
|
Conserved hypothetical protein
|
||
|
Position: -376
Score: 3.9 Sequence: TTTGAAATCCCATTCAAT
Position: -164
Score: 4.2 Sequence: ACTGCTTGTTAATGCAAG
Locus tag: Shewana3_3097
Name: potF Funciton: Putrescine ABC transporter, substrate-binding protein (TC 3.A.1.11.2)
Locus tag: Shewana3_3096
Name: potG Funciton: Putrescine ABC transporter, ATP-binding protein (TC 3.A.1.11.2)
Locus tag: Shewana3_3095
Name: potH Funciton: Putrescine ABC transporter, permease protein 1 (TC 3.A.1.11.2)
Locus tag: Shewana3_3094
Name: potI Funciton: Putrescine ABC transporter, permease protein 2 (TC 3.A.1.11.2) |
|||
|
potF
|
Putrescine ABC transporter, substrate-binding protein (TC 3.A.1.11.2)
|
||
|
potG
|
Putrescine ABC transporter, ATP-binding protein (TC 3.A.1.11.2)
|
||
|
potH
|
Putrescine ABC transporter, permease protein 1 (TC 3.A.1.11.2)
|
||
|
potI
|
Putrescine ABC transporter, permease protein 2 (TC 3.A.1.11.2)
|
||
|
Position: -25
Score: 4.7 Sequence: AATGAAAATAAATTCAGG
Locus tag: Shewana3_2487
Name: ggt2 Funciton: Gamma-glutamyltranspeptidase (EC 2.3.2.2) |
|||
|
ggt2
|
Gamma-glutamyltranspeptidase (EC 2.3.2.2)
|
||
|
Position: -742
Score: 5.3 Sequence: TCTGCATTTTTATTCAAA
Locus tag: Shewana3_3871
Name: speF Funciton: Ornithine decarboxylase (EC 4.1.1.17)
Locus tag: Shewana3_3872
Name: potE Funciton: Putrescine/proton symporter, putrescine/ornithine antiporter PotE
Locus tag: Shewana3_3873
Name: SO0312 Funciton: Predicted outer membrane porin |
|||
|
speF
|
Ornithine decarboxylase (EC 4.1.1.17)
|
||
|
potE
|
Putrescine/proton symporter, putrescine/ornithine antiporter PotE
|
||
|
SO0312
|
Predicted outer membrane porin
|
||
|
Position: -209
Score: 4.2 Sequence: ATTGAATTTTTATTGGTA
Position: -165
Score: 5.3 Sequence: AGTGAATGAAAATTCAGA
Locus tag: Shewana3_3292
Name: pbpG Funciton: D-alanyl-D-alanine endopeptidase |
|||
|
pbpG
|
D-alanyl-D-alanine endopeptidase
|
||
|
Position: -201
Score: 4.5 Sequence: AGTGATTATTAAATCACA
Locus tag: Shewana3_0356
Name: ilvG Funciton: Acetolactate synthase large subunit (EC 2.2.1.6)
Locus tag: Shewana3_0357
Name: ilvM Funciton: Acetolactate synthase small subunit (EC 2.2.1.6)
Locus tag: Shewana3_0358
Name: ilvD Funciton: Dihydroxy-acid dehydratase (EC 4.2.1.9)
Locus tag: Shewana3_0359
Name: ilvA Funciton: Threonine dehydratase biosynthetic (EC 4.3.1.19) |
|||
|
ilvG
|
Acetolactate synthase large subunit (EC 2.2.1.6)
|
||
|
ilvM
|
Acetolactate synthase small subunit (EC 2.2.1.6)
|
||
|
ilvD
|
Dihydroxy-acid dehydratase (EC 4.2.1.9)
|
||
|
ilvA
|
Threonine dehydratase biosynthetic (EC 4.3.1.19)
|
||
|
Position: -307
Score: 4.1 Sequence: ATTGTGTAGTTATTCATA
Position: -247
Score: 4 Sequence: TCTGACTAAATATGCTAA
Locus tag: Shewana3_0610
Name: astC Funciton: Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81)
Locus tag: Shewana3_0611
Name: astA Funciton: Arginine N-succinyltransferase (EC 2.3.1.109)
Locus tag: Shewana3_0612
Name: astD Funciton: Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71)
Locus tag: Shewana3_0613
Name: SO0620 Funciton: Conserved hypothetical protein |
|||
|
astC
|
Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81)
|
||
|
astA
|
Arginine N-succinyltransferase (EC 2.3.1.109)
|
||
|
astD
|
Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71)
|
||
|
SO0620
|
Conserved hypothetical protein
|
||
|
Position: -468
Score: 3.9 Sequence: AATCACAATTTATTCATT
Position: -384
Score: 3.8 Sequence: TATGCATATTTCTCCATA
Position: -106
Score: 3.6 Sequence: ACTGAATGAAAGTGAATC
Locus tag: Shewana3_1958
Name: omp(Arg) Funciton: TonB-dependent receptor |
|||
|
omp(Arg)
|
TonB-dependent receptor
|
||
|
Position: -360
Score: 4.5 Sequence: ATAGAATAACAATTCATT
Position: -339
Score: 4 Sequence: TATAAATTTTTATACATC
Position: -314
Score: 4.3 Sequence: TTTGCAATAAAAATCACT
Locus tag: Shewana3_3050
Name: gltB Funciton: Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
Locus tag: Shewana3_3051
Name: gltD Funciton: Glutamate synthase [NADPH] small chain (EC 1.4.1.13) |
|||
|
gltB
|
Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
|
||
|
gltD
|
Glutamate synthase [NADPH] small chain (EC 1.4.1.13)
|
||
|
Position: -71
Score: 5.1 Sequence: ACTGTATATAAATTCAGT
Position: -49
Score: 3.7 Sequence: ACTGTTTATCAATACAGT
Locus tag: Shewana3_1104
Name: recN Funciton: DNA repair protein RecN |
|||
|
recN
|
DNA repair protein RecN
|
||
|
Position: -93
Score: 5.5 Sequence: ATTGCATTTTTATTCAGT
Locus tag: Shewana3_3510
Name: argR Funciton: Arginine metabolism transcriptional regulator ArgR |
|||
|
argR
|
Arginine metabolism transcriptional regulator ArgR
|
||
|
Position: -444
Score: 4.1 Sequence: AATGCATTTGCAATCAAC
Position: -172
Score: 5 Sequence: AATGCATAAAAATACACT
Locus tag: Shewana3_2536
Name: SO2753 Funciton: Prolyl endopeptidase (EC 3.4.21.26) |
|||
|
SO2753
|
Prolyl endopeptidase (EC 3.4.21.26)
|
||
|
Position: -254
Score: 4.4 Sequence: AATGAATAAAAAATGATA
Position: -97
Score: 4.8 Sequence: TATGCATTTTTAATCATT
Position: -76
Score: 4 Sequence: AAAGCATAATTATTGAAA
Locus tag: Shewana3_0882
Name: artI Funciton: Arginine ABC transporter, substrate-binding protein
Locus tag: Shewana3_0881
Name: artQ Funciton: Arginine ABC transporter, permease protein
Locus tag: Shewana3_0880
Name: artM Funciton: Arginine ABC transporter, ATP-binding protein |
|||
|
artI
|
Arginine ABC transporter, substrate-binding protein
|
||
|
artQ
|
Arginine ABC transporter, permease protein
|
||
|
artM
|
Arginine ABC transporter, ATP-binding protein
|
||
|
Position: -234
Score: 3.9 Sequence: ATTGATTTTAAATAAATA
Position: -195
Score: 4.1 Sequence: ACCGATTAAAAATGCACC
Locus tag: Shewana3_3533
Name: SO0762 Funciton: Isochorismate hydrolase (EC 3.3.2.1) |
|||
|
SO0762
|
Isochorismate hydrolase (EC 3.3.2.1)
|
||
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |