Regulon of ArgR in Shewanella sp MR-7

Properties
Regulator type:	Transcription factor
TF locus tag:	Shewmr7_0613
Regulator family:	ArgR
Regulation mode:	repressor (activator)
Biological process:	Arginine degradation; Arginine biosynthesis
Effector:	Arginine
Regulog:	ArgR - Shewanellaceae
Statistics of regulated genes:
- Genes	43
- Operons	24
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 502 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By trascription factor - ArgR
By TF family - ArgR
By effector - Arginine
By pathway - Arginine degradation
By pathway - Arginine biosynthesis

Regulated operons
	Locus Tag	Name	Function
Position: -219 Score: 4.5 Sequence: AGTGATTATTAAATCACA Locus tag: Shewmr7_3664 Name: ilvG Funciton: Acetolactate synthase large subunit (EC 2.2.1.6) Locus tag: Shewmr7_3663 Name: ilvM Funciton: Acetolactate synthase small subunit (EC 2.2.1.6) Locus tag: Shewmr7_3662 Name: ilvD Funciton: Dihydroxy-acid dehydratase (EC 4.2.1.9) Locus tag: Shewmr7_3661 Name: ilvA Funciton: Threonine dehydratase biosynthetic (EC 4.3.1.19)
	Shewmr7_3664	ilvG	Acetolactate synthase large subunit (EC 2.2.1.6)
	Shewmr7_3663	ilvM	Acetolactate synthase small subunit (EC 2.2.1.6)
	Shewmr7_3662	ilvD	Dihydroxy-acid dehydratase (EC 4.2.1.9)
	Shewmr7_3661	ilvA	Threonine dehydratase biosynthetic (EC 4.3.1.19)
Position: -265 Score: 3.8 Sequence: CCAGAATTTTAATTTATT Position: -211 Score: 4 Sequence: TTCGATTAAAAATGCACC Locus tag: Shewmr7_0590 Name: SO0762 Funciton: Isochorismate hydrolase (EC 3.3.2.1)
	Shewmr7_0590	SO0762	Isochorismate hydrolase (EC 3.3.2.1)
Position: -97 Score: 5 Sequence: AATGAATTTTTAATCAAA Position: -76 Score: 4 Sequence: AAAGCATAATTATTGACA Locus tag: Shewmr7_0919 Name: artI Funciton: Arginine ABC transporter, substrate-binding protein Locus tag: Shewmr7_0918 Name: artQ Funciton: Arginine ABC transporter, permease protein Locus tag: Shewmr7_0917 Name: artM Funciton: Arginine ABC transporter, ATP-binding protein
	Shewmr7_0919	artI	Arginine ABC transporter, substrate-binding protein
	Shewmr7_0918	artQ	Arginine ABC transporter, permease protein
	Shewmr7_0917	artM	Arginine ABC transporter, ATP-binding protein
Position: -190 Score: 4.9 Sequence: TATGAGTATTTATTCATT Position: -123 Score: 3.8 Sequence: ATTTAATTTACAAACACT Locus tag: Shewmr7_1455 Name: aprE Funciton: Alkaline serine protease
	Shewmr7_1455	aprE	Alkaline serine protease
Position: -227 Score: 4 Sequence: AGTCACTTTTTAATCAAA Position: -142 Score: 3.6 Sequence: AAGAAATAGTTATGCATT Locus tag: Shewmr7_1659 Name: astB Funciton: Succinylarginine dihydrolase (EC 3.5.3.23)
	Shewmr7_1659	astB	Succinylarginine dihydrolase (EC 3.5.3.23)
Position: -25 Score: 4.7 Sequence: AATGAAAATAAATTCAGG Locus tag: Shewmr7_2369 Name: ggt2 Funciton: Gamma-glutamyltranspeptidase (EC 2.3.2.2)
	Shewmr7_2369	ggt2	Gamma-glutamyltranspeptidase (EC 2.3.2.2)
Position: -71 Score: 5.1 Sequence: ACTGTATATAAATTCAGT Position: -49 Score: 3.7 Sequence: ACTGTTTATCAATACAGT Locus tag: Shewmr7_1170 Name: recN Funciton: DNA repair protein RecN
	Shewmr7_1170	recN	DNA repair protein RecN
Position: -106 Score: 4.2 Sequence: TTTAAATTCACATTCAGT Locus tag: Shewmr7_4005 Name: SO4732 Funciton: Conserved hypothetical protein
	Shewmr7_4005	SO4732	Conserved hypothetical protein
Position: -307 Score: 4.1 Sequence: ATTGTGTAGTTATTCATA Position: -247 Score: 4 Sequence: TCTGACTAAATATGCTAA Locus tag: Shewmr7_3419 Name: astC Funciton: Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81) Locus tag: Shewmr7_3418 Name: astA Funciton: Arginine N-succinyltransferase (EC 2.3.1.109) Locus tag: Shewmr7_3417 Name: astD Funciton: Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71) Locus tag: Shewmr7_3416 Name: SO0620 Funciton: Conserved hypothetical protein
	Shewmr7_3419	astC	Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81)
	Shewmr7_3418	astA	Arginine N-succinyltransferase (EC 2.3.1.109)
	Shewmr7_3417	astD	Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71)
	Shewmr7_3416	SO0620	Conserved hypothetical protein
Position: -327 Score: 4.4 Sequence: ACTGAGTTATTAAGCAGT Position: -249 Score: 4 Sequence: TAAAAATATATATTCACA Locus tag: Shewmr7_0236 Name: argC Funciton: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
	Shewmr7_0236	argC	N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
Position: -60 Score: 4.9 Sequence: AATGCATAAAGATTCACT Locus tag: Shewmr7_0237 Name: argB Funciton: Acetylglutamate kinase (EC 2.7.2.8) Locus tag: Shewmr7_0238 Name: argF Funciton: Ornithine carbamoyltransferase (EC 2.1.3.3) Locus tag: Shewmr7_0239 Name: argG Funciton: Argininosuccinate synthase (EC 6.3.4.5) Locus tag: Shewmr7_0240 Name: argH Funciton: Argininosuccinate lyase (EC 4.3.2.1)
	Shewmr7_0237	argB	Acetylglutamate kinase (EC 2.7.2.8)
	Shewmr7_0238	argF	Ornithine carbamoyltransferase (EC 2.1.3.3)
	Shewmr7_0239	argG	Argininosuccinate synthase (EC 6.3.4.5)
	Shewmr7_0240	argH	Argininosuccinate lyase (EC 4.3.2.1)
Position: -84 Score: 4.5 Sequence: TTTGAACAAACATTCAAA Position: -60 Score: 3.9 Sequence: CTTGAATGATCGTTCAAA Position: -33 Score: 4.2 Sequence: CTTGAATGCATATTCAAG Locus tag: Shewmr7_1229 Name: SO3392 Funciton: NADH-dependent flavin oxidoreductase, Oye family
	Shewmr7_1229	SO3392	NADH-dependent flavin oxidoreductase, Oye family
Position: -100 Score: 3.8 Sequence: AATGAGAATAAATTCTTT Position: -79 Score: 5.4 Sequence: GGTGAATTAAAATGCAAT Locus tag: Shewmr7_0362 Name: argA Funciton: N-acetylglutamate synthase (EC 2.3.1.1)
	Shewmr7_0362	argA	N-acetylglutamate synthase (EC 2.3.1.1)
Position: -741 Score: 4.9 Sequence: TTTGCATTTTTATGCAAG Locus tag: Shewmr7_0278 Name: speF Funciton: Ornithine decarboxylase (EC 4.1.1.17) Locus tag: Shewmr7_0277 Name: potE Funciton: Putrescine/proton symporter, putrescine/ornithine antiporter PotE Locus tag: Shewmr7_0276 Name: SO0312 Funciton: Predicted outer membrane porin
	Shewmr7_0278	speF	Ornithine decarboxylase (EC 4.1.1.17)
	Shewmr7_0277	potE	Putrescine/proton symporter, putrescine/ornithine antiporter PotE
	Shewmr7_0276	SO0312	Predicted outer membrane porin
Position: -427 Score: 4.4 Sequence: AGTGCTTTTAAATTGAAA Position: -375 Score: 4.2 Sequence: TGTGAAATCTCATTCAAT Position: -164 Score: 4.2 Sequence: TGTGCTTGTTAATGCAAG Locus tag: Shewmr7_3000 Name: potF Funciton: Putrescine ABC transporter, substrate-binding protein (TC 3.A.1.11.2) Locus tag: Shewmr7_2999 Name: potG Funciton: Putrescine ABC transporter, ATP-binding protein (TC 3.A.1.11.2) Locus tag: Shewmr7_2998 Name: potH Funciton: Putrescine ABC transporter, permease protein 1 (TC 3.A.1.11.2) Locus tag: Shewmr7_2997 Name: potI Funciton: Putrescine ABC transporter, permease protein 2 (TC 3.A.1.11.2)
	Shewmr7_3000	potF	Putrescine ABC transporter, substrate-binding protein (TC 3.A.1.11.2)
	Shewmr7_2999	potG	Putrescine ABC transporter, ATP-binding protein (TC 3.A.1.11.2)
	Shewmr7_2998	potH	Putrescine ABC transporter, permease protein 1 (TC 3.A.1.11.2)
	Shewmr7_2997	potI	Putrescine ABC transporter, permease protein 2 (TC 3.A.1.11.2)
Position: -260 Score: 5.2 Sequence: TATGCATATTAATTCAGA Locus tag: Shewmr7_1767 Name: SO1443 Funciton: Conserved hypothetical protein
	Shewmr7_1767	SO1443	Conserved hypothetical protein
Position: -274 Score: 5.5 Sequence: TATGAATTTATATTCATT Position: -253 Score: 4.8 Sequence: TGTGATTTTCAATTCAAT Locus tag: Shewmr7_3758 Name: mcp(Arg) Funciton: Methyl-accepting chemotaxis protein
	Shewmr7_3758	mcp(Arg)	Methyl-accepting chemotaxis protein
Position: -189 Score: 4.3 Sequence: GCTGCTTAGTTATTCATT Locus tag: Shewmr7_3195 Name: pbpG Funciton: D-alanyl-D-alanine endopeptidase
	Shewmr7_3195	pbpG	D-alanyl-D-alanine endopeptidase
Position: -457 Score: 3.5 Sequence: AATCACAAGTTATTCATT Position: -373 Score: 3.9 Sequence: TGTGCATAATTAATCGAC Position: -105 Score: 3.6 Sequence: ACTGAATGAAAGTGAATC Locus tag: Shewmr7_2075 Name: omp(Arg) Funciton: TonB-dependent receptor
	Shewmr7_2075	omp(Arg)	TonB-dependent receptor
Position: -359 Score: 4.5 Sequence: AAAGAATAACAATTCACT Position: -313 Score: 4.3 Sequence: TTTGCAATAAAAATCACT Locus tag: Shewmr7_2954 Name: gltB Funciton: Glutamate synthase [NADPH] large chain (EC 1.4.1.13) Locus tag: Shewmr7_2955 Name: gltD Funciton: Glutamate synthase [NADPH] small chain (EC 1.4.1.13)
	Shewmr7_2954	gltB	Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
	Shewmr7_2955	gltD	Glutamate synthase [NADPH] small chain (EC 1.4.1.13)
Position: -445 Score: 4.1 Sequence: AATGCATTTGCAATCAAC Position: -172 Score: 5 Sequence: AATGCATAAAAATACACT Locus tag: Shewmr7_2445 Name: SO2753 Funciton: Prolyl endopeptidase (EC 3.4.21.26)
	Shewmr7_2445	SO2753	Prolyl endopeptidase (EC 3.4.21.26)
Position: -93 Score: 5.2 Sequence: ACTGCATTTTTATTCATC Locus tag: Shewmr7_0613 Name: argR Funciton: Arginine metabolism transcriptional regulator ArgR
	Shewmr7_0613	argR	Arginine metabolism transcriptional regulator ArgR
Position: -322 Score: 3.9 Sequence: ATTCAATTTAAAGGCCAT Position: -176 Score: 3.7 Sequence: AACGAATGTTCATTTAAT Locus tag: Shewmr7_3069 Name: oadG Funciton: Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3) Locus tag: Shewmr7_3068 Name: oadA Funciton: Oxaloacetate decarboxylase, alpha chain (EC 4.1.1.3) Locus tag: Shewmr7_3067 Name: oadB Funciton: Oxaloacetate decarboxylase, beta chain (EC 4.1.1.3)
	Shewmr7_3069	oadG	Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3)
	Shewmr7_3068	oadA	Oxaloacetate decarboxylase, alpha chain (EC 4.1.1.3)
	Shewmr7_3067	oadB	Oxaloacetate decarboxylase, beta chain (EC 4.1.1.3)
Position: -98 Score: 4.8 Sequence: GTTGAATGAAAATGCATC Locus tag: Shewmr7_1129 Name: argW Funciton: Predicted arginine uptake transporter, COG3314 family
	Shewmr7_1129	argW	Predicted arginine uptake transporter, COG3314 family

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of ArgR in Shewanella sp MR-7

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --