Regulon of ArgR in Shewanella sp W3-18-1

Properties
Regulator type:	Transcription factor
TF locus tag:	Sputw3181_0721
Regulator family:	ArgR
Regulation mode:	repressor (activator)
Biological process:	Arginine degradation; Arginine biosynthesis
Effector:	Arginine
Regulog:	ArgR - Shewanellaceae
Statistics of regulated genes:
- Genes	41
- Operons	21
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 502 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By trascription factor - ArgR
By TF family - ArgR
By effector - Arginine
By pathway - Arginine degradation
By pathway - Arginine biosynthesis

Regulated operons
	Locus Tag	Name	Function
Position: -193 Score: 4.2 Sequence: TATGAAAATAAATTAAAA Position: -180 Score: 4 Sequence: TAAAAATATATATTCACA Position: -57 Score: 4 Sequence: AGTGAATAAAATAACAAT Locus tag: Sputw3181_3860 Name: argC Funciton: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
	Sputw3181_3860	argC	N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
Position: -112 Score: 5.3 Sequence: GATGCATTTAAATTCACA Locus tag: Sputw3181_0037 Name: SO4732 Funciton: Conserved hypothetical protein
	Sputw3181_0037	SO4732	Conserved hypothetical protein
Position: -156 Score: 5.6 Sequence: ATTGAATTTTTATTCACA Locus tag: Sputw3181_1531 Name: aprE Funciton: Alkaline serine protease
	Sputw3181_1531	aprE	Alkaline serine protease
Position: -84 Score: 4.5 Sequence: TTTGAACAAACATTCAAA Position: -60 Score: 4.7 Sequence: CTTGAATGTTCATTCAAA Position: -33 Score: 4 Sequence: CTTGAATGCACATTCAAG Locus tag: Sputw3181_1292 Name: SO3392 Funciton: NADH-dependent flavin oxidoreductase, Oye family
	Sputw3181_1292	SO3392	NADH-dependent flavin oxidoreductase, Oye family
Position: -332 Score: 5.3 Sequence: GATGAATTTATATGCATT Locus tag: Sputw3181_0230 Name: mcp(Arg) Funciton: Methyl-accepting chemotaxis protein
	Sputw3181_0230	mcp(Arg)	Methyl-accepting chemotaxis protein
Position: -225 Score: 4 Sequence: AGTCACTTTTTAATCAAA Position: -131 Score: 4.2 Sequence: TATGCATTTATCGTCAAA Locus tag: Sputw3181_1757 Name: astB Funciton: Succinylarginine dihydrolase (EC 3.5.3.23)
	Sputw3181_1757	astB	Succinylarginine dihydrolase (EC 3.5.3.23)
Position: -230 Score: 4.6 Sequence: TATGATTGATAATGCAAT Locus tag: Sputw3181_3070 Name: potF Funciton: Putrescine ABC transporter, substrate-binding protein (TC 3.A.1.11.2) Locus tag: Sputw3181_3069 Name: potG Funciton: Putrescine ABC transporter, ATP-binding protein (TC 3.A.1.11.2) Locus tag: Sputw3181_3068 Name: potH Funciton: Putrescine ABC transporter, permease protein 1 (TC 3.A.1.11.2) Locus tag: Sputw3181_3067 Name: potI Funciton: Putrescine ABC transporter, permease protein 2 (TC 3.A.1.11.2)
	Sputw3181_3070	potF	Putrescine ABC transporter, substrate-binding protein (TC 3.A.1.11.2)
	Sputw3181_3069	potG	Putrescine ABC transporter, ATP-binding protein (TC 3.A.1.11.2)
	Sputw3181_3068	potH	Putrescine ABC transporter, permease protein 1 (TC 3.A.1.11.2)
	Sputw3181_3067	potI	Putrescine ABC transporter, permease protein 2 (TC 3.A.1.11.2)
Position: -852 Score: 4.9 Sequence: TATGCATAACAATTCAAA Locus tag: Sputw3181_3820 Name: null Funciton: Transposase, IS4 family Locus tag: Sputw3181_3821 Name: speF Funciton: Ornithine decarboxylase (EC 4.1.1.17) Locus tag: Sputw3181_3822 Name: potE Funciton: Putrescine/proton symporter, putrescine/ornithine antiporter PotE Locus tag: Sputw3181_3823 Name: SO0312 Funciton: Predicted outer membrane porin
	Sputw3181_3820		Transposase, IS4 family
	Sputw3181_3821	speF	Ornithine decarboxylase (EC 4.1.1.17)
	Sputw3181_3822	potE	Putrescine/proton symporter, putrescine/ornithine antiporter PotE
	Sputw3181_3823	SO0312	Predicted outer membrane porin
Position: -25 Score: 4.7 Sequence: AATGAAAATAAATTCAGG Locus tag: Sputw3181_2358 Name: ggt2 Funciton: Gamma-glutamyltranspeptidase (EC 2.3.2.2)
	Sputw3181_2358	ggt2	Gamma-glutamyltranspeptidase (EC 2.3.2.2)
Position: -60 Score: 4.9 Sequence: AATGCATAAAGATTCATT Locus tag: Sputw3181_3859 Name: argB Funciton: Acetylglutamate kinase (EC 2.7.2.8) Locus tag: Sputw3181_3858 Name: argF Funciton: Ornithine carbamoyltransferase (EC 2.1.3.3) Locus tag: Sputw3181_3857 Name: argG Funciton: Argininosuccinate synthase (EC 6.3.4.5) Locus tag: Sputw3181_3856 Name: argH Funciton: Argininosuccinate lyase (EC 4.3.2.1)
	Sputw3181_3859	argB	Acetylglutamate kinase (EC 2.7.2.8)
	Sputw3181_3858	argF	Ornithine carbamoyltransferase (EC 2.1.3.3)
	Sputw3181_3857	argG	Argininosuccinate synthase (EC 6.3.4.5)
	Sputw3181_3856	argH	Argininosuccinate lyase (EC 4.3.2.1)
Position: -214 Score: 4.2 Sequence: CGTGATTATTAAATCACA Locus tag: Sputw3181_3754 Name: ilvG Funciton: Acetolactate synthase large subunit (EC 2.2.1.6) Locus tag: Sputw3181_3753 Name: ilvM Funciton: Acetolactate synthase small subunit (EC 2.2.1.6) Locus tag: Sputw3181_3752 Name: ilvD Funciton: Dihydroxy-acid dehydratase (EC 4.2.1.9) Locus tag: Sputw3181_3751 Name: ilvA Funciton: Threonine dehydratase biosynthetic (EC 4.3.1.19)
	Sputw3181_3754	ilvG	Acetolactate synthase large subunit (EC 2.2.1.6)
	Sputw3181_3753	ilvM	Acetolactate synthase small subunit (EC 2.2.1.6)
	Sputw3181_3752	ilvD	Dihydroxy-acid dehydratase (EC 4.2.1.9)
	Sputw3181_3751	ilvA	Threonine dehydratase biosynthetic (EC 4.3.1.19)
Position: -124 Score: 4.9 Sequence: GTTGAATGAAAATGCACC Locus tag: Sputw3181_1204 Name: argW Funciton: Predicted arginine uptake transporter, COG3314 family
	Sputw3181_1204	argW	Predicted arginine uptake transporter, COG3314 family
Position: -265 Score: 4.3 Sequence: TATCCTTATAAATTCACT Position: -154 Score: 4.3 Sequence: TGTGAATATTTAGTCTTT Position: -133 Score: 4 Sequence: TGTGATTTTATATGCTGC Locus tag: Sputw3181_3136 Name: oadG Funciton: Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3) Locus tag: Sputw3181_3135 Name: oadA Funciton: Oxaloacetate decarboxylase, alpha chain (EC 4.1.1.3) Locus tag: Sputw3181_3134 Name: oadB Funciton: Oxaloacetate decarboxylase, beta chain (EC 4.1.1.3)
	Sputw3181_3136	oadG	Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3)
	Sputw3181_3135	oadA	Oxaloacetate decarboxylase, alpha chain (EC 4.1.1.3)
	Sputw3181_3134	oadB	Oxaloacetate decarboxylase, beta chain (EC 4.1.1.3)
Position: -358 Score: 4.8 Sequence: GGAGAATAAAAATTCACT Position: -312 Score: 4.3 Sequence: TTTGCAATAAAAATCACT Locus tag: Sputw3181_3028 Name: gltB Funciton: Glutamate synthase [NADPH] large chain (EC 1.4.1.13) Locus tag: Sputw3181_3029 Name: gltD Funciton: Glutamate synthase [NADPH] small chain (EC 1.4.1.13)
	Sputw3181_3028	gltB	Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
	Sputw3181_3029	gltD	Glutamate synthase [NADPH] small chain (EC 1.4.1.13)
Position: -517 Score: 3.8 Sequence: GATGCATATTTGTTAATT Position: -478 Score: 4 Sequence: TGTGCATAAAAATTACAT Locus tag: Sputw3181_2068 Name: omp(Arg) Funciton: TonB-dependent receptor
	Sputw3181_2068	omp(Arg)	TonB-dependent receptor
Position: -307 Score: 4.1 Sequence: ATTGTGTAGTTATTCATA Position: -247 Score: 4 Sequence: TCTGACTAAATATGCTAC Locus tag: Sputw3181_3529 Name: astC Funciton: Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81) Locus tag: Sputw3181_3528 Name: astA Funciton: Arginine N-succinyltransferase (EC 2.3.1.109) Locus tag: Sputw3181_3527 Name: astD Funciton: Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71) Locus tag: Sputw3181_3526 Name: SO0620 Funciton: Conserved hypothetical protein
	Sputw3181_3529	astC	Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81)
	Sputw3181_3528	astA	Arginine N-succinyltransferase (EC 2.3.1.109)
	Sputw3181_3527	astD	Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71)
	Sputw3181_3526	SO0620	Conserved hypothetical protein
Position: -71 Score: 4.6 Sequence: ACTGTATATAAAATCAGT Position: -49 Score: 3.7 Sequence: ACTGTTTATCAATACAGT Locus tag: Sputw3181_1241 Name: recN Funciton: DNA repair protein RecN
	Sputw3181_1241	recN	DNA repair protein RecN
Position: -444 Score: 4.1 Sequence: AATGCATTTGCAATCAAC Position: -193 Score: 3.6 Sequence: AATAACTTATCAATCAGT Position: -172 Score: 5 Sequence: AGTGCATAAAAATACATT Locus tag: Sputw3181_2420 Name: SO2753 Funciton: Prolyl endopeptidase (EC 3.4.21.26)
	Sputw3181_2420	SO2753	Prolyl endopeptidase (EC 3.4.21.26)
Position: -106 Score: 5.1 Sequence: AATGAATTTATAGTCACA Position: -85 Score: 4 Sequence: AAAGCATAATTATTGACA Locus tag: Sputw3181_0918 Name: artI Funciton: Arginine ABC transporter, substrate-binding protein Locus tag: Sputw3181_0917 Name: artQ Funciton: Arginine ABC transporter, permease protein Locus tag: Sputw3181_0916 Name: artM Funciton: Arginine ABC transporter, ATP-binding protein
	Sputw3181_0918	artI	Arginine ABC transporter, substrate-binding protein
	Sputw3181_0917	artQ	Arginine ABC transporter, permease protein
	Sputw3181_0916	artM	Arginine ABC transporter, ATP-binding protein
Position: -117 Score: 3.9 Sequence: AGTGAGAATAAATTCTTT Position: -96 Score: 5.5 Sequence: TGTGAATTAAAATGCAAT Locus tag: Sputw3181_0368 Name: argA Funciton: N-acetylglutamate synthase (EC 2.3.1.1)
	Sputw3181_0368	argA	N-acetylglutamate synthase (EC 2.3.1.1)
Position: -96 Score: 5.5 Sequence: AGTGAATTTTTATTCAAC Locus tag: Sputw3181_0721 Name: argR Funciton: Arginine metabolism transcriptional regulator ArgR
	Sputw3181_0721	argR	Arginine metabolism transcriptional regulator ArgR

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of ArgR in Shewanella sp W3-18-1

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --