Regulon of ArgR in Shewanella putrefaciens CN-32

Properties
Regulator type:	Transcription factor
TF locus tag:	Sputcn32_3220
Regulator family:	ArgR
Regulation mode:	repressor (activator)
Biological process:	Arginine degradation; Arginine biosynthesis
Effector:	Arginine
Regulog:	ArgR - Shewanellaceae
Statistics of regulated genes:
- Genes	40
- Operons	21
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 502 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By trascription factor - ArgR
By TF family - ArgR
By effector - Arginine
By pathway - Arginine degradation
By pathway - Arginine biosynthesis

Regulated operons
	Locus Tag	Name	Function
Position: -307 Score: 4.1 Sequence: ATTGTGTAGTTATTCATA Position: -247 Score: 4 Sequence: TCTGACTAAATATGCTAC Locus tag: Sputcn32_0645 Name: astC Funciton: Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81) Locus tag: Sputcn32_0646 Name: astA Funciton: Arginine N-succinyltransferase (EC 2.3.1.109) Locus tag: Sputcn32_0647 Name: astD Funciton: Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71) Locus tag: Sputcn32_0648 Name: SO0620 Funciton: Conserved hypothetical protein
	Sputcn32_0645	astC	Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81)
	Sputcn32_0646	astA	Arginine N-succinyltransferase (EC 2.3.1.109)
	Sputcn32_0647	astD	Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71)
	Sputcn32_0648	SO0620	Conserved hypothetical protein
Position: -225 Score: 4 Sequence: AGTCACTTTTTAATCAAA Position: -131 Score: 4.2 Sequence: TATGCATTTATCGTCAAA Locus tag: Sputcn32_2251 Name: astB Funciton: Succinylarginine dihydrolase (EC 3.5.3.23)
	Sputcn32_2251	astB	Succinylarginine dihydrolase (EC 3.5.3.23)
Position: -156 Score: 5.6 Sequence: ATTGAATTTTTATTCACA Locus tag: Sputcn32_2477 Name: aprE Funciton: Alkaline serine protease
	Sputcn32_2477	aprE	Alkaline serine protease
Position: -117 Score: 3.9 Sequence: AGTGAGAATAAATTCTTT Position: -96 Score: 5.5 Sequence: TGTGAATTAAAATGCAAT Locus tag: Sputcn32_0465 Name: argA Funciton: N-acetylglutamate synthase (EC 2.3.1.1)
	Sputcn32_0465	argA	N-acetylglutamate synthase (EC 2.3.1.1)
Position: -60 Score: 4.9 Sequence: AATGCATAAAGATTCATT Locus tag: Sputcn32_3716 Name: argB Funciton: Acetylglutamate kinase (EC 2.7.2.8) Locus tag: Sputcn32_3715 Name: argF Funciton: Ornithine carbamoyltransferase (EC 2.1.3.3) Locus tag: Sputcn32_3714 Name: argG Funciton: Argininosuccinate synthase (EC 6.3.4.5) Locus tag: Sputcn32_3713 Name: argH Funciton: Argininosuccinate lyase (EC 4.3.2.1)
	Sputcn32_3716	argB	Acetylglutamate kinase (EC 2.7.2.8)
	Sputcn32_3715	argF	Ornithine carbamoyltransferase (EC 2.1.3.3)
	Sputcn32_3714	argG	Argininosuccinate synthase (EC 6.3.4.5)
	Sputcn32_3713	argH	Argininosuccinate lyase (EC 4.3.2.1)
Position: -71 Score: 4.6 Sequence: ACTGTATATAAAATCAGT Position: -49 Score: 3.7 Sequence: ACTGTTTATCAATACAGT Locus tag: Sputcn32_2771 Name: recN Funciton: DNA repair protein RecN
	Sputcn32_2771	recN	DNA repair protein RecN
Position: -332 Score: 5.3 Sequence: GATGAATTTATATGCATT Locus tag: Sputcn32_0380 Name: mcp(Arg) Funciton: Methyl-accepting chemotaxis protein
	Sputcn32_0380	mcp(Arg)	Methyl-accepting chemotaxis protein
Position: -84 Score: 4.5 Sequence: TTTGAACAAACATTCAAA Position: -60 Score: 4.7 Sequence: CTTGAATGTTCATTCAAA Position: -33 Score: 4 Sequence: CTTGAATGCACATTCAAG Locus tag: Sputcn32_2720 Name: SO3392 Funciton: NADH-dependent flavin oxidoreductase, Oye family
	Sputcn32_2720	SO3392	NADH-dependent flavin oxidoreductase, Oye family
Position: -230 Score: 4.6 Sequence: TATGATTGATAATGCAAT Locus tag: Sputcn32_1094 Name: potF Funciton: Putrescine ABC transporter, substrate-binding protein (TC 3.A.1.11.2) Locus tag: Sputcn32_1095 Name: potG Funciton: Putrescine ABC transporter, ATP-binding protein (TC 3.A.1.11.2) Locus tag: Sputcn32_1096 Name: potH Funciton: Putrescine ABC transporter, permease protein 1 (TC 3.A.1.11.2) Locus tag: Sputcn32_1097 Name: potI Funciton: Putrescine ABC transporter, permease protein 2 (TC 3.A.1.11.2)
	Sputcn32_1094	potF	Putrescine ABC transporter, substrate-binding protein (TC 3.A.1.11.2)
	Sputcn32_1095	potG	Putrescine ABC transporter, ATP-binding protein (TC 3.A.1.11.2)
	Sputcn32_1096	potH	Putrescine ABC transporter, permease protein 1 (TC 3.A.1.11.2)
	Sputcn32_1097	potI	Putrescine ABC transporter, permease protein 2 (TC 3.A.1.11.2)
Position: -25 Score: 4.7 Sequence: AATGAAAATAAATTCAGG Locus tag: Sputcn32_1667 Name: ggt2 Funciton: Gamma-glutamyltranspeptidase (EC 2.3.2.2)
	Sputcn32_1667	ggt2	Gamma-glutamyltranspeptidase (EC 2.3.2.2)
Position: -754 Score: 4.9 Sequence: TATGCATAACAATTCAAA Locus tag: Sputcn32_3679 Name: speF Funciton: Ornithine decarboxylase (EC 4.1.1.17) Locus tag: Sputcn32_3680 Name: potE Funciton: Putrescine/proton symporter, putrescine/ornithine antiporter PotE Locus tag: Sputcn32_3681 Name: SO0312 Funciton: Predicted outer membrane porin
	Sputcn32_3679	speF	Ornithine decarboxylase (EC 4.1.1.17)
	Sputcn32_3680	potE	Putrescine/proton symporter, putrescine/ornithine antiporter PotE
	Sputcn32_3681	SO0312	Predicted outer membrane porin
Position: -112 Score: 5.3 Sequence: GATGCATTTAAATTCACA Locus tag: Sputcn32_3915 Name: SO4732 Funciton: Conserved hypothetical protein
	Sputcn32_3915	SO4732	Conserved hypothetical protein
Position: -214 Score: 4.2 Sequence: CGTGATTATTAAATCACA Locus tag: Sputcn32_3614 Name: ilvG Funciton: Acetolactate synthase large subunit (EC 2.2.1.6) Locus tag: Sputcn32_3613 Name: ilvM Funciton: Acetolactate synthase small subunit (EC 2.2.1.6) Locus tag: Sputcn32_3612 Name: ilvD Funciton: Dihydroxy-acid dehydratase (EC 4.2.1.9) Locus tag: Sputcn32_3611 Name: ilvA Funciton: Threonine dehydratase biosynthetic (EC 4.3.1.19)
	Sputcn32_3614	ilvG	Acetolactate synthase large subunit (EC 2.2.1.6)
	Sputcn32_3613	ilvM	Acetolactate synthase small subunit (EC 2.2.1.6)
	Sputcn32_3612	ilvD	Dihydroxy-acid dehydratase (EC 4.2.1.9)
	Sputcn32_3611	ilvA	Threonine dehydratase biosynthetic (EC 4.3.1.19)
Position: -192 Score: 4.2 Sequence: TATGAAAATAAATTAAAA Position: -57 Score: 3.8 Sequence: AGTGAATAAAATAACAAC Locus tag: Sputcn32_3717 Name: argC Funciton: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
	Sputcn32_3717	argC	N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
Position: -358 Score: 4.7 Sequence: GAAGAATAAAAATTCACT Position: -312 Score: 4.3 Sequence: TTTGCAATAAAAATCACT Locus tag: Sputcn32_1136 Name: gltB Funciton: Glutamate synthase [NADPH] large chain (EC 1.4.1.13) Locus tag: Sputcn32_1135 Name: gltD Funciton: Glutamate synthase [NADPH] small chain (EC 1.4.1.13)
	Sputcn32_1136	gltB	Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
	Sputcn32_1135	gltD	Glutamate synthase [NADPH] small chain (EC 1.4.1.13)
Position: -124 Score: 4.9 Sequence: GTTGAATGAAAATGCACC Locus tag: Sputcn32_2808 Name: argW Funciton: Predicted arginine uptake transporter, COG3314 family
	Sputcn32_2808	argW	Predicted arginine uptake transporter, COG3314 family
Position: -478 Score: 4 Sequence: TGTGCATAAAAATTACAT Locus tag: Sputcn32_1940 Name: omp(Arg) Funciton: TonB-dependent receptor
	Sputcn32_1940	omp(Arg)	TonB-dependent receptor
Position: -265 Score: 4.3 Sequence: TATCCTTATAAATTCACT Position: -154 Score: 4.3 Sequence: TGTGAATATTTAGTCTTT Position: -133 Score: 4 Sequence: TGTGATTTTATATGCTGC Locus tag: Sputcn32_1029 Name: oadG Funciton: Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3) Locus tag: Sputcn32_1030 Name: oadA Funciton: Oxaloacetate decarboxylase, alpha chain (EC 4.1.1.3) Locus tag: Sputcn32_1031 Name: oadB Funciton: Oxaloacetate decarboxylase, beta chain (EC 4.1.1.3)
	Sputcn32_1029	oadG	Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3)
	Sputcn32_1030	oadA	Oxaloacetate decarboxylase, alpha chain (EC 4.1.1.3)
	Sputcn32_1031	oadB	Oxaloacetate decarboxylase, beta chain (EC 4.1.1.3)
Position: -96 Score: 5.5 Sequence: AGTGAATTTTTATTCAAC Locus tag: Sputcn32_3220 Name: argR Funciton: Arginine metabolism transcriptional regulator ArgR
	Sputcn32_3220	argR	Arginine metabolism transcriptional regulator ArgR
Position: -444 Score: 4.1 Sequence: AATGCATTTGCAATCAAC Position: -193 Score: 3.6 Sequence: AATAACTTATCAATCAGT Position: -172 Score: 5 Sequence: AGTGCATAAAAATACATT Locus tag: Sputcn32_1602 Name: SO2753 Funciton: Prolyl endopeptidase (EC 3.4.21.26)
	Sputcn32_1602	SO2753	Prolyl endopeptidase (EC 3.4.21.26)
Position: -106 Score: 5.1 Sequence: AATGAATTTATAGTCACA Position: -85 Score: 4 Sequence: AAAGCATAATTATTGACA Locus tag: Sputcn32_3027 Name: artI Funciton: Arginine ABC transporter, substrate-binding protein Locus tag: Sputcn32_3028 Name: artQ Funciton: Arginine ABC transporter, permease protein Locus tag: Sputcn32_3029 Name: artM Funciton: Arginine ABC transporter, ATP-binding protein
	Sputcn32_3027	artI	Arginine ABC transporter, substrate-binding protein
	Sputcn32_3028	artQ	Arginine ABC transporter, permease protein
	Sputcn32_3029	artM	Arginine ABC transporter, ATP-binding protein

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of ArgR in Shewanella putrefaciens CN-32

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --