Regulon of ArgR in Shewanella oneidensis MR-1

Properties
Regulator type:	Transcription factor
TF locus tag:	SO0769
Regulator family:	ArgR
Regulation mode:	repressor (activator)
Biological process:	Arginine degradation; Arginine biosynthesis
Effector:	Arginine
Regulog:	ArgR - Shewanellaceae
Statistics of regulated genes:
- Genes	39
- Operons	22
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 502 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By trascription factor - ArgR
By TF family - ArgR
By effector - Arginine
By pathway - Arginine degradation
By pathway - Arginine biosynthesis

Regulated operons
	Locus Tag	Name	Function
Position: -227 Score: 4 Sequence: AGTCACTTTTTAATCAAA Position: -142 Score: 3.6 Sequence: AAGAAATAGTTATGCATT Position: -40 Score: 4.1 Sequence: TTTGAATAAATAATAACC Locus tag: SO_2706 Name: astB Funciton: Succinylarginine dihydrolase (EC 3.5.3.23)
	SO_2706	astB	Succinylarginine dihydrolase (EC 3.5.3.23)
Position: -63 Score: 4.6 Sequence: GCTGAATAAATATTAAAA Locus tag: SO_1915 Name: SO1915 Funciton: Serine protease, subtilase family
	SO_1915	SO1915	Serine protease, subtilase family
Position: -84 Score: 4.6 Sequence: ATTGAACAAACATTCAAA Position: -60 Score: 4.6 Sequence: CTTGAATGATCATTCAAA Locus tag: SO_3392 Name: SO3392 Funciton: NADH-dependent flavin oxidoreductase, Oye family
	SO_3392	SO3392	NADH-dependent flavin oxidoreductase, Oye family
Position: -307 Score: 4.1 Sequence: ATTGTGTAGTTATTCATA Position: -247 Score: 4 Sequence: TCTGACTAAATATGCTAA Locus tag: SO_0617 Name: astC Funciton: Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81) Locus tag: SO_0618 Name: astA Funciton: Arginine N-succinyltransferase (EC 2.3.1.109) Locus tag: SO_0619 Name: astD Funciton: Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71) Locus tag: SO_0620 Name: SO0620 Funciton: Conserved hypothetical protein
	SO_0617	astC	Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81)
	SO_0618	astA	Arginine N-succinyltransferase (EC 2.3.1.109)
	SO_0619	astD	Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71)
	SO_0620	SO0620	Conserved hypothetical protein
Position: -327 Score: 3.6 Sequence: ATTGAAATATTAAGTAGT Position: -249 Score: 4 Sequence: TAAAAATATATATTCACA Position: -127 Score: 3.7 Sequence: AGTGAATAAAATAACAAG Locus tag: SO_0275 Name: argC Funciton: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
	SO_0275	argC	N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
Position: -60 Score: 4.9 Sequence: AGTGCATAAAGATTCACT Locus tag: SO_0276 Name: argB Funciton: Acetylglutamate kinase (EC 2.7.2.8) Locus tag: SO_0277 Name: argF Funciton: Ornithine carbamoyltransferase (EC 2.1.3.3) Locus tag: SO_0278 Name: argG Funciton: Argininosuccinate synthase (EC 6.3.4.5) Locus tag: SO_0279 Name: argH Funciton: Argininosuccinate lyase (EC 4.3.2.1)
	SO_0276	argB	Acetylglutamate kinase (EC 2.7.2.8)
	SO_0277	argF	Ornithine carbamoyltransferase (EC 2.1.3.3)
	SO_0278	argG	Argininosuccinate synthase (EC 6.3.4.5)
	SO_0279	argH	Argininosuccinate lyase (EC 4.3.2.1)
Position: -141 Score: 4.3 Sequence: TTTGAAAATATAAGCACT Position: -79 Score: 5.4 Sequence: GGTGAATTAAAATGCAAT Locus tag: SO_4245 Name: argA Funciton: N-acetylglutamate synthase (EC 2.3.1.1)
	SO_4245	argA	N-acetylglutamate synthase (EC 2.3.1.1)
Position: -71 Score: 4.6 Sequence: ACTGTATATAAAATCAGT Position: -49 Score: 3.7 Sequence: ACTGTTTATCAATACAGT Locus tag: SO_3462 Name: recN Funciton: DNA repair protein RecN
	SO_3462	recN	DNA repair protein RecN
Position: -286 Score: 5.5 Sequence: TGTGAATATATATGCAAT Locus tag: SO_4466 Name: mcp(Arg) Funciton: Methyl-accepting chemotaxis protein
	SO_4466	mcp(Arg)	Methyl-accepting chemotaxis protein
Position: -299 Score: 5.2 Sequence: TATGCATATTAATTCAGA Locus tag: SO_1443 Name: SO1443 Funciton: Conserved hypothetical protein
	SO_1443	SO1443	Conserved hypothetical protein
Position: -106 Score: 4.2 Sequence: TTTAAATTCACATTCAGT Locus tag: SO_4732 Name: SO4732 Funciton: Conserved hypothetical protein
	SO_4732	SO4732	Conserved hypothetical protein
Position: -25 Score: 4.7 Sequence: AATGAAAATAAATTCAGG Locus tag: SO_1952 Name: ggt2 Funciton: Gamma-glutamyltranspeptidase (EC 2.3.2.2)
	SO_1952	ggt2	Gamma-glutamyltranspeptidase (EC 2.3.2.2)
Position: -736 Score: 5.1 Sequence: TCTGCATTTTTATGCAAA Locus tag: SO_0314 Name: speF Funciton: Ornithine decarboxylase (EC 4.1.1.17) Locus tag: SO_0313 Name: potE Funciton: Putrescine/proton symporter, putrescine/ornithine antiporter PotE Locus tag: SO_0312 Name: SO0312 Funciton: Predicted outer membrane porin
	SO_0314	speF	Ornithine decarboxylase (EC 4.1.1.17)
	SO_0313	potE	Putrescine/proton symporter, putrescine/ornithine antiporter PotE
	SO_0312	SO0312	Predicted outer membrane porin
Position: -195 Score: 4.6 Sequence: TGTGCCTAAAAATGCACC Locus tag: SO_0762 Name: SO0762 Funciton: Isochorismate hydrolase (EC 3.3.2.1)
	SO_0762	SO0762	Isochorismate hydrolase (EC 3.3.2.1)
Position: -359 Score: 4.5 Sequence: AAAGAATAACAATTCACT Position: -313 Score: 4.3 Sequence: TTTGCAATAAAAATCACT Locus tag: SO_1325 Name: gltB Funciton: Glutamate synthase [NADPH] large chain (EC 1.4.1.13) Locus tag: SO_1324 Name: gltD Funciton: Glutamate synthase [NADPH] small chain (EC 1.4.1.13)
	SO_1325	gltB	Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
	SO_1324	gltD	Glutamate synthase [NADPH] small chain (EC 1.4.1.13)
Position: -383 Score: 4.7 Sequence: TATGCATATTTTTTCATT Position: -204 Score: 3.7 Sequence: TATGTGTAAGCATTCAAT Locus tag: SO_2427 Name: omp(Arg) Funciton: TonB-dependent receptor
	SO_2427	omp(Arg)	TonB-dependent receptor
Position: -93 Score: 5.5 Sequence: ATTGCATTTTTATTCAGT Locus tag: SO_0769 Name: argR Funciton: Arginine metabolism transcriptional regulator ArgR
	SO_0769	argR	Arginine metabolism transcriptional regulator ArgR
Position: -226 Score: 4.2 Sequence: TTTGCTTGTTAATGCAAG Locus tag: SO_1270 Name: potF Funciton: Putrescine ABC transporter, substrate-binding protein (TC 3.A.1.11.2) Locus tag: SO_1271 Name: potG Funciton: Putrescine ABC transporter, ATP-binding protein (TC 3.A.1.11.2) Locus tag: SO_1272 Name: potH Funciton: Putrescine ABC transporter, permease protein 1 (TC 3.A.1.11.2) Locus tag: SO_1273 Name: potI Funciton: Putrescine ABC transporter, permease protein 2 (TC 3.A.1.11.2)
	SO_1270	potF	Putrescine ABC transporter, substrate-binding protein (TC 3.A.1.11.2)
	SO_1271	potG	Putrescine ABC transporter, ATP-binding protein (TC 3.A.1.11.2)
	SO_1272	potH	Putrescine ABC transporter, permease protein 1 (TC 3.A.1.11.2)
	SO_1273	potI	Putrescine ABC transporter, permease protein 2 (TC 3.A.1.11.2)
Position: -445 Score: 4.1 Sequence: AATGCATTTGCAATCAAC Position: -173 Score: 5 Sequence: AATGCATAAAAATACACT Locus tag: SO_2753 Name: SO2753 Funciton: Prolyl endopeptidase (EC 3.4.21.26)
	SO_2753	SO2753	Prolyl endopeptidase (EC 3.4.21.26)
Position: -97 Score: 5.1 Sequence: AATGAATTTTTAGTCACA Position: -76 Score: 4 Sequence: AAAGCATAATTATTGACA Locus tag: SO_1044 Name: artI Funciton: Arginine ABC transporter, substrate-binding protein Locus tag: SO_1043 Name: artQ Funciton: Arginine ABC transporter, permease protein Locus tag: SO_1042 Name: artM Funciton: Arginine ABC transporter, ATP-binding protein
	SO_1044	artI	Arginine ABC transporter, substrate-binding protein
	SO_1043	artQ	Arginine ABC transporter, permease protein
	SO_1042	artM	Arginine ABC transporter, ATP-binding protein
Position: -99 Score: 4.8 Sequence: GTTGAATGAAAATGCAGC Locus tag: SO_1245 Name: argW Funciton: Predicted arginine uptake transporter, COG3314 family
	SO_1245	argW	Predicted arginine uptake transporter, COG3314 family
Position: -216 Score: 4.2 Sequence: CGTGATTATTAAATCACA Locus tag: SO_4347 Name: ilvG Funciton: Acetolactate synthase large subunit (EC 2.2.1.6) Locus tag: SO_4346 Name: ilvM Funciton: Acetolactate synthase small subunit (EC 2.2.1.6) Locus tag: SO_4345 Name: ilvD Funciton: Dihydroxy-acid dehydratase (EC 4.2.1.9) Locus tag: SO_4344 Name: ilvA Funciton: Threonine dehydratase biosynthetic (EC 4.3.1.19)
	SO_4347	ilvG	Acetolactate synthase large subunit (EC 2.2.1.6)
	SO_4346	ilvM	Acetolactate synthase small subunit (EC 2.2.1.6)
	SO_4345	ilvD	Dihydroxy-acid dehydratase (EC 4.2.1.9)
	SO_4344	ilvA	Threonine dehydratase biosynthetic (EC 4.3.1.19)

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of ArgR in Shewanella oneidensis MR-1

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --