Regulon of Cobalamin in Burkholderia vietnamiensis G4
| Regulator type: | RNA regulatory element |
| Name: | Cobalamin |
| RFAM: | RF00174 |
| Regulation mode: | |
| Biological process: | Cobalamin biosynthesis |
| Effector: | Adenosylcobalamin |
| Regulog: | Cobalamin - Burkholderia |
| Under regulation: | |
| - Genes | 19 |
| - Operons | 5 |
Member of regulog collections
- By taxonomy - Burkholderia
- By RNA motif - Cobalamin
- By effector - Adenosylcobalamin
- By pathway - Cobalamin biosynthesis
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -296
Score: 86.9 Sequence: CTACGGCCGTTCGTT...
Locus tag: Bcep1808_1610
Name: cobG Funciton: Cobalamin biosynthesis protein CobG
Locus tag: Bcep1808_1609
Name: cbiC Funciton: Cobalt-precorrin-8x methylmutase (EC 5.4.1.2)
Locus tag: Bcep1808_1608
Name: cbiL Funciton: Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130)
Locus tag: Bcep1808_1607
Name: cbiGH Funciton: Cobalamin biosynthesis protein CbiG / Cobalt-precorrin-3b C17-methyltransferase |
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cobG
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Cobalamin biosynthesis protein CobG
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cbiC
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Cobalt-precorrin-8x methylmutase (EC 5.4.1.2)
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cbiL
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Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130)
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cbiGH
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Cobalamin biosynthesis protein CbiG / Cobalt-precorrin-3b C17-methyltransferase
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Position: -449
Score: 39.2 Sequence: ACACTCGCACGCGTT...
Locus tag: Bcep1808_1600
Name: hoxN Funciton: HoxN/HupN/NixA family cobalt transporter
Locus tag: Bcep1808_1601
Name: cobW Funciton: CobW GTPase involved in cobalt insertion for B12 biosynthesis
Locus tag: Bcep1808_1602
Name: cobN Funciton: CobN component of cobalt chelatase involved in B12 biosynthesis
Locus tag: Bcep1808_1603
Name: chlI Funciton: ChlI component of cobalt chelatase involved in B12 biosynthesis
Locus tag: Bcep1808_1604
Name: chlD Funciton: ChlD component of cobalt chelatase involved in B12 biosynthesis |
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hoxN
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HoxN/HupN/NixA family cobalt transporter
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cobW
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CobW GTPase involved in cobalt insertion for B12 biosynthesis
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cobN
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CobN component of cobalt chelatase involved in B12 biosynthesis
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chlI
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ChlI component of cobalt chelatase involved in B12 biosynthesis
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chlD
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ChlD component of cobalt chelatase involved in B12 biosynthesis
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Position: -736
Score: 29.8 Sequence: CCTAAACTGGCGCGG...
Locus tag: Bcep1808_2539
Name: btuC Funciton: ABC-type cobalamin transport system, permease component
Locus tag: Bcep1808_2538
Name: btuD Funciton: ABC-type cobalamin transport system, ATPase components
Locus tag: Bcep1808_2537
Name: cobT Funciton: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)
Locus tag: Bcep1808_2536
Name: cobS Funciton: Cobalamin-5-phosphate synthase CobS
Locus tag: Bcep1808_2535
Name: cobC Funciton: Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73) |
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btuC
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ABC-type cobalamin transport system, permease component
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btuD
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ABC-type cobalamin transport system, ATPase components
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cobT
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Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)
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cobS
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Cobalamin-5-phosphate synthase CobS
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cobC
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Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73)
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Position: -402
Score: 107.9 Sequence: TACGCTTGCGCACCG...
Locus tag: Bcep1808_5001
Name: btuB1 Funciton: Outer membrane vitamin B12 receptor BtuB |
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btuB1
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Outer membrane vitamin B12 receptor BtuB
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Position: -399
Score: 37.6 Sequence: TATCGTATGCGCCGC...
Locus tag: Bcep1808_1599
Name: cysG Funciton: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
Locus tag: Bcep1808_1598
Name: cbiG Funciton: Cobalamin biosynthesis protein CbiG
Locus tag: Bcep1808_1597
Name: btuR Funciton: Cob(I)alamin adenosyltransferase (EC 2.5.1.17)
Locus tag: Bcep1808_1596
Name: cbiA Funciton: Cobyrinic acid A,C-diamide synthase |
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cysG
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Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
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cbiG
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Cobalamin biosynthesis protein CbiG
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btuR
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Cob(I)alamin adenosyltransferase (EC 2.5.1.17)
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cbiA
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Cobyrinic acid A,C-diamide synthase
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |