Regulon of CcpA in Bacillus pumilus SAFR-032
| Regulator type: | Transcription factor |
| TF locus tag: | BPUM_2620 |
| Regulator family: | LacI |
| Regulation mode: | |
| Biological process: | Carbon catabolism |
| Effector: | HPr, phosphocarrier protein |
| Regulog: | CcpA - Bacillales |
| Statistics of regulated genes: | |
| - Genes | 146 |
| - Operons | 66 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Bacillales
- By trascription factor - CcpA
- By TF family - LacI
- By effector - HPr, phosphocarrier protein
- By pathway - Carbon catabolism
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: 411
Score: 5.2 Sequence: ATGAAAGCGCTGACAA
Locus tag: BPUM_2513
Name: lcfA Funciton: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
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lcfA
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Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
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Position: -76
Score: 4.6 Sequence: ATGTAAATGTTTACAT
Locus tag: BPUM_2208
Name: yqgY Funciton: Uncharacterized short membrane protein |
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yqgY
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Uncharacterized short membrane protein
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Position: -40
Score: 4.8 Sequence: ATGAAAACGGTTAAAA
Locus tag: BPUM_2210
Name: yqgW Funciton: Alkaliphily related protein |
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yqgW
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Alkaliphily related protein
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Position: -59
Score: 5.1 Sequence: TTGAAAGCGCTTTTAT
Locus tag: BPUM_0455
Name: acoR Funciton: Transcriptional activator of acetoin dehydrogenase operon AcoR |
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acoR
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Transcriptional activator of acetoin dehydrogenase operon AcoR
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Position: -68
Score: 4.5 Sequence: TTGTAAACGCTTCATT
Locus tag: BPUM_2534
Name: lrgA Funciton: Antiholin-like protein LrgA
Locus tag: BPUM_2533
Name: lrgB Funciton: LrgA-associated membrane protein LrgB |
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lrgA
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Antiholin-like protein LrgA
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lrgB
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LrgA-associated membrane protein LrgB
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Position: -82
Score: 4.5 Sequence: TTGTAAACGGTTTATA
Locus tag: BPUM_2081
Name: drm Funciton: Phosphopentomutase (EC 5.4.2.7)
Locus tag: BPUM_2080
Name: punA Funciton: Purine nucleoside phosphorylase (EC 2.4.2.1) |
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drm
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Phosphopentomutase (EC 5.4.2.7)
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punA
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Purine nucleoside phosphorylase (EC 2.4.2.1)
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Position: -31
Score: 4.5 Sequence: ATGTAAACGAATTCAT
Locus tag: BPUM_3586
Name: nupC Funciton: Nucleoside permease NupC
Locus tag: BPUM_3585
Name: pdp Funciton: Pyrimidine-nucleoside phosphorylase (EC 2.4.2.2) |
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nupC
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Nucleoside permease NupC
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pdp
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Pyrimidine-nucleoside phosphorylase (EC 2.4.2.2)
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Position: -106
Score: 4.1 Sequence: GTGAAAGCGTTTTACG
Locus tag: BPUM_0369
Name: mtlA Funciton: PTS family mannitol-permease II, BC component
Locus tag: BPUM_0370
Name: mtlF Funciton: PTS mannitol-specific enzyme IIA component
Locus tag: BPUM_0371
Name: mtlD Funciton: Mannitol-1-phosphate 5-dehydrogenase (EC 1.1.1.17) |
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mtlA
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PTS family mannitol-permease II, BC component
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mtlF
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PTS mannitol-specific enzyme IIA component
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mtlD
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Mannitol-1-phosphate 5-dehydrogenase (EC 1.1.1.17)
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Position: -60
Score: 5 Sequence: TTGAAAGCGTTTTATA
Locus tag: BPUM_0388
Name: mtlR Funciton: Mannitol operon activator, BglG family |
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mtlR
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Mannitol operon activator, BglG family
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Position: -254
Score: 4.9 Sequence: TTGATAGCGGTTTCAA
Locus tag: BPUM_2330
Name: araR Funciton: Transcriptional repressor of arabinoside utilization operon, GntR family |
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araR
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Transcriptional repressor of arabinoside utilization operon, GntR family
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Position: -51
Score: 4.8 Sequence: AAGAAAGCGTTTTCTT
Locus tag: BPUM_3613
Name: cycB Funciton: Maltose/maltodextrin ABC transporter, substrate binding periplasmic protein
Locus tag: BPUM_3614
Name: ganP Funciton: Maltose/maltodextrin ABC transporter, permease protein
Locus tag: BPUM_3615
Name: ganQ Funciton: ABC-type maltose/maltodextrin transport system, permease component
Locus tag: BPUM_3616
Name: yvfO Funciton: Extracellular arabinogalactan endo-1,4-beta-galactosidase (EC 3.2.1.89)
Locus tag: BPUM_3617
Name: ganA Funciton: Beta-galactosidase (EC 3.2.1.23) |
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cycB
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Maltose/maltodextrin ABC transporter, substrate binding periplasmic protein
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ganP
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Maltose/maltodextrin ABC transporter, permease protein
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ganQ
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ABC-type maltose/maltodextrin transport system, permease component
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yvfO
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Extracellular arabinogalactan endo-1,4-beta-galactosidase (EC 3.2.1.89)
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ganA
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Beta-galactosidase (EC 3.2.1.23)
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Position: -74
Score: 4.4 Sequence: GTGAAACCGTTTTAAT
Locus tag: BPUM_2617
Name: acuA Funciton: Acetyltransferase AcuA, acetyl-CoA synthetase inhibitor
Locus tag: BPUM_2618
Name: acuB Funciton: Component of the acetoin degradation regulation pathway
Locus tag: BPUM_2619
Name: acuC Funciton: Acetoin dehydrogenase |
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acuA
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Acetyltransferase AcuA, acetyl-CoA synthetase inhibitor
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acuB
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Component of the acetoin degradation regulation pathway
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acuC
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Acetoin dehydrogenase
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Position: -156
Score: 4.5 Sequence: ATTATAGCGCTTACAA
Locus tag: BPUM_3416
Name: ywfI Funciton: Predicted heme peroxidase involved in anaerobic stress response |
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ywfI
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Predicted heme peroxidase involved in anaerobic stress response
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Position: -59
Score: 5.1 Sequence: ATGAAAGCGTTTAAAT
Locus tag: BPUM_2978
Name: dapA Funciton: Dihydrodipicolinate synthase family
Locus tag: BPUM_2977
Name: eutG Funciton: Alcohol dehydrogenase (EC 1.1.1.1)
Locus tag: BPUM_2976
Name: BPUM_2976 Funciton: Probable sodium:solute symporter
Locus tag: BPUM_2975
Name: BPUM_2975 Funciton: Hypothetical protein
Locus tag: BPUM_2974
Name: BLi03703 Funciton: Sigma-L-dependent transcriptional regulator
Locus tag: BPUM_2973
Name: hop Funciton: Candidate type III effector Hop protein
Locus tag: BPUM_2972
Name: pdxA Funciton: 4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262) |
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dapA
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Dihydrodipicolinate synthase family
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eutG
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Alcohol dehydrogenase (EC 1.1.1.1)
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BPUM_2976
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Probable sodium:solute symporter
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BPUM_2975
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Hypothetical protein
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BLi03703
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Sigma-L-dependent transcriptional regulator
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hop
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Candidate type III effector Hop protein
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pdxA
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4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262)
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Position: -58
Score: 4.8 Sequence: ATGAAAACGCCTTCAA
Locus tag: BPUM_1403
Name: ylbP Funciton: Uncharacterized N-acetyltransferase (EC 2.3.1.-) |
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ylbP
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Uncharacterized N-acetyltransferase (EC 2.3.1.-)
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Position: -104
Score: 4.9 Sequence: TTGAAAGGGTTTTCAA
Locus tag: BPUM_1233
Name: ykoM Funciton: Putative transcriptional regulator, MarR family |
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ykoM
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Putative transcriptional regulator, MarR family
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Position: -57
Score: 4.8 Sequence: ATGAAAGCGCAGTCTA
Locus tag: BPUM_1507
Name: sucC Funciton: Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)
Locus tag: BPUM_1508
Name: sucD Funciton: Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) |
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sucC
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Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)
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sucD
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Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5)
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Position: -49
Score: 4.2 Sequence: CTGAAAGCGCATTTAT
Locus tag: BPUM_2216
Name: yqgQ Funciton: Hypothetical Cytosolic Protein
Locus tag: BPUM_2215
Name: glcK Funciton: Glucokinase (EC 2.7.1.2) |
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yqgQ
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Hypothetical Cytosolic Protein
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glcK
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Glucokinase (EC 2.7.1.2)
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Position: -41
Score: 4.1 Sequence: AGTGAAGCGCTTTCAA
Locus tag: BPUM_0922
Name: msmX Funciton: Maltose/maltodextrin transport ATP-binding protein (EC 3.6.3.19) |
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msmX
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Maltose/maltodextrin transport ATP-binding protein (EC 3.6.3.19)
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Position: -103
Score: 4.4 Sequence: TTTTAACCGTTTTCAT
Locus tag: BPUM_2209
Name: yqgX Funciton: Similar to Hydroxyacylglutathione hydrolase, but in an organism lacking glutathione biosynthesis |
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yqgX
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Similar to Hydroxyacylglutathione hydrolase, but in an organism lacking glutathione biosynthesis
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Position: -216
Score: 5.2 Sequence: ATGTAAGCGTTTTCTT
Locus tag: BPUM_0244
Name: glsA1 Funciton: Glutaminase (EC 3.5.1.2)
Locus tag: BPUM_0243
Name: glnT Funciton: Glutamine permease |
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glsA1
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Glutaminase (EC 3.5.1.2)
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glnT
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Glutamine permease
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Position: -35
Score: 4.7 Sequence: ATGAAAGCGGTTAATT
Locus tag: BPUM_2326
Name: araE Funciton: Arabinose-proton symporter |
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araE
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Arabinose-proton symporter
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Position: -200
Score: 4.6 Sequence: GTGTAAGCGTATACAT
Locus tag: BPUM_2473
Name: dat Funciton: Branched-chain amino acid aminotransferase (EC 2.6.1.42) |
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dat
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Branched-chain amino acid aminotransferase (EC 2.6.1.42)
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Position: -35
Score: 4.8 Sequence: ATGTAAACGCTTACCA
Locus tag: BPUM_1785
Name: yngI Funciton: Long-chain fatty-acid-CoA ligase (EC 6.2.1.3)
Locus tag: BPUM_1784
Name: yngH Funciton: Biotin carboxylase of methylcrotonyl-CoA carboxylase (EC 6.3.4.14)
Locus tag: BPUM_1783
Name: yngHB Funciton: Biotin carboxyl carrier protein of methylcrotonyl-CoA carboxylase ( EC:6.4.1.2 )
Locus tag: BPUM_1782
Name: yngG Funciton: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
Locus tag: BPUM_1781
Name: yngF Funciton: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
Locus tag: BPUM_1780
Name: yngE Funciton: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
Locus tag: BPUM_1779
Name: acsA2 Funciton: Acetoacetyl-CoA synthetase [leucine] (EC 6.2.1.16) |
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yngI
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Long-chain fatty-acid-CoA ligase (EC 6.2.1.3)
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yngH
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Biotin carboxylase of methylcrotonyl-CoA carboxylase (EC 6.3.4.14)
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yngHB
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Biotin carboxyl carrier protein of methylcrotonyl-CoA carboxylase ( EC:6.4.1.2 )
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yngG
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Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
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yngF
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Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
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yngE
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Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
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acsA2
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Acetoacetyl-CoA synthetase [leucine] (EC 6.2.1.16)
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Position: -120
Score: 4.6 Sequence: ATGAAAGCGGTTGCCT
Position: -32
Score: 4.5 Sequence: ATGTAAACGGTTTATT
Locus tag: BPUM_3618
Name: citMII Funciton: Magnesium citrate secondary transporter |
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citMII
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Magnesium citrate secondary transporter
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Position: -221
Score: 4.6 Sequence: AAGAAAGCGTTGACAT
Locus tag: BPUM_0209
Name: bglP1 Funciton: PTS system, beta-glucoside-specific enzyme II, ABC component
Locus tag: BPUM_0210
Name: bglB Funciton: Beta-glucosidase (EC 3.2.1.21); 6-phospho-beta-glucosidase (EC 3.2.1.86) |
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bglP1
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PTS system, beta-glucoside-specific enzyme II, ABC component
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bglB
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Beta-glucosidase (EC 3.2.1.21); 6-phospho-beta-glucosidase (EC 3.2.1.86)
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Position: -35
Score: 4.6 Sequence: TTGTAAACGAATTCAA
Locus tag: BPUM_0145
Name: mrp Funciton: Scaffold protein for [4Fe-4S] cluster assembly ApbC, MRP-like |
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mrp
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Scaffold protein for [4Fe-4S] cluster assembly ApbC, MRP-like
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Position: -28
Score: 5 Sequence: ATGATAACGCTTTCAA
Locus tag: BPUM_2666
Name: ytcP Funciton: ABC superfamily ATP binding cassette transporter, membrane protein
Locus tag: BPUM_2665
Name: ytcQ Funciton: Sugar ABC transporter substrate-binding protein |
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ytcP
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ABC superfamily ATP binding cassette transporter, membrane protein
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ytcQ
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Sugar ABC transporter substrate-binding protein
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Position: 951
Score: 4.7 Sequence: ATGAAACCGCTTACGA
Locus tag: BPUM_3063
Name: sigL Funciton: DNA-directed RNA polymerase sigma subunit SigL |
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sigL
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DNA-directed RNA polymerase sigma subunit SigL
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Position: -330
Score: 4.8 Sequence: ATGAAAACGCTTTTTT
Locus tag: BPUM_2252
Name: cccA Funciton: Membrane-attached cytochrome c550 |
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cccA
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Membrane-attached cytochrome c550
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Position: -180
Score: 4.7 Sequence: ATGTAAGCGGTAACAG
Locus tag: BPUM_2579
Name: ackA Funciton: Acetate kinase (EC 2.7.2.1) |
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ackA
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Acetate kinase (EC 2.7.2.1)
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Position: 415
Score: 4.9 Sequence: ATGTAAGCGTTTGCTT
Locus tag: BPUM_0451
Name: acoA Funciton: Acetoin dehydrogenase E1 component alpha-subunit (EC 1.2.4.-)
Locus tag: BPUM_0452
Name: acoB Funciton: Acetoin dehydrogenase E1 component beta-subunit (EC 1.2.4.-)
Locus tag: BPUM_0453
Name: acoC Funciton: Dihydrolipoamide acetyltransferase component (E2) of acetoin dehydrogenase complex (EC 2.3.1.-)
Locus tag: BPUM_0454
Name: acoL Funciton: Dihydrolipoamide dehydrogenase of acetoin dehydrogenase (EC 1.8.1.4) |
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acoA
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Acetoin dehydrogenase E1 component alpha-subunit (EC 1.2.4.-)
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acoB
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Acetoin dehydrogenase E1 component beta-subunit (EC 1.2.4.-)
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acoC
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Dihydrolipoamide acetyltransferase component (E2) of acetoin dehydrogenase complex (EC 2.3.1.-)
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acoL
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Dihydrolipoamide dehydrogenase of acetoin dehydrogenase (EC 1.8.1.4)
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Position: -30
Score: 4.7 Sequence: TTGTAAACGTATGCAA
Locus tag: BPUM_2616
Name: acsA Funciton: Acetyl-coenzyme A synthetase (EC 6.2.1.1) |
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acsA
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Acetyl-coenzyme A synthetase (EC 6.2.1.1)
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Position: -38
Score: 5 Sequence: AAGAAAACGCTTTCAA
Locus tag: BPUM_0463
Name: bglS Funciton: Endo-beta-1,3-1,4 glucanase (Licheninase) (EC 3.2.1.73) |
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bglS
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Endo-beta-1,3-1,4 glucanase (Licheninase) (EC 3.2.1.73)
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Position: -71
Score: 5.3 Sequence: ATGAAAGCGGTTTCAT
Locus tag: BPUM_3506
Name: licB Funciton: PTS system, lichenan-specific IIB component (EC 2.7.1.69); PTS system, cellobiose-specific IIB component (EC 2.7.1.69)
Locus tag: BPUM_3505
Name: licC Funciton: PTS system, lichenan-specific IIC component (EC 2.7.1.69)
Locus tag: BPUM_3504
Name: licA Funciton: PTS system, lichenan-specific IIA component (EC 2.7.1.69)
Locus tag: BPUM_3503
Name: licH Funciton: 6-phospho-beta-glucosidase (EC 3.2.1.86) |
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licB
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PTS system, lichenan-specific IIB component (EC 2.7.1.69); PTS system, cellobiose-specific IIB component (EC 2.7.1.69)
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licC
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PTS system, lichenan-specific IIC component (EC 2.7.1.69)
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licA
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PTS system, lichenan-specific IIA component (EC 2.7.1.69)
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licH
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6-phospho-beta-glucosidase (EC 3.2.1.86)
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Position: -30
Score: 4.7 Sequence: ATGAATACGTTTTCAA
Locus tag: BPUM_1334
Name: fruR Funciton: Transcriptional regulator of fructose utilization, DeoR family
Locus tag: BPUM_1335
Name: fruK Funciton: Tagatose-6-phosphate kinase (EC 2.7.1.144) / 1-phosphofructokinase (EC 2.7.1.56)
Locus tag: BPUM_1336
Name: fruA Funciton: PTS system fructose-specific enzyme II, ABC subunits (EC 2.7.1.69) |
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fruR
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Transcriptional regulator of fructose utilization, DeoR family
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fruK
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Tagatose-6-phosphate kinase (EC 2.7.1.144) / 1-phosphofructokinase (EC 2.7.1.56)
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fruA
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PTS system fructose-specific enzyme II, ABC subunits (EC 2.7.1.69)
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Position: -38
Score: 4.2 Sequence: GTGTAAACGGTTACAC
Locus tag: BPUM_3263
Name: rbsR Funciton: Ribose operon repressor, LacI family
Locus tag: BPUM_3264
Name: rbsK Funciton: Ribokinase (EC 2.7.1.15)
Locus tag: BPUM_3265
Name: rbsD Funciton: Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1)
Locus tag: BPUM_3266
Name: rbsA Funciton: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)
Locus tag: BPUM_3267
Name: rbsC Funciton: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)
Locus tag: BPUM_3268
Name: rbsB Funciton: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) |
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rbsR
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Ribose operon repressor, LacI family
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rbsK
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Ribokinase (EC 2.7.1.15)
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rbsD
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Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1)
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rbsA
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Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)
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rbsC
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Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)
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rbsB
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Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)
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Position: -139
Score: 4.2 Sequence: ATGTACGCGGTTTCTT
Locus tag: BPUM_2503
Name: sdhC Funciton: Succinate dehydrogenase cytochrome b558 subunit
Locus tag: BPUM_2502
Name: sdhA Funciton: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Locus tag: BPUM_2501
Name: sdhB Funciton: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
Locus tag: BPUM_2500
Name: ysmA Funciton: 4-hydroxybenzoyl-CoA thioesterase, putative |
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sdhC
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Succinate dehydrogenase cytochrome b558 subunit
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sdhA
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Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
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sdhB
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Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
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ysmA
|
4-hydroxybenzoyl-CoA thioesterase, putative
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Position: -191
Score: 4.9 Sequence: TTGACAACGTTTTCAT
Locus tag: BPUM_0882
Name: glpF Funciton: Glycerol uptake facilitator protein
Locus tag: BPUM_0883
Name: glpK Funciton: Glycerol kinase (EC 2.7.1.30) |
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glpF
|
Glycerol uptake facilitator protein
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glpK
|
Glycerol kinase (EC 2.7.1.30)
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Position: -35
Score: 5 Sequence: TTGAAACCGCTATCAA
Locus tag: BPUM_2329
Name: null Funciton: Ribulokinase (EC 2.7.1.16)
Locus tag: BPUM_2328
Name: araD Funciton: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)
Locus tag: BPUM_2327
Name: araA Funciton: L-arabinose isomerase (EC 5.3.1.4) |
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Ribulokinase (EC 2.7.1.16)
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araD
|
L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)
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araA
|
L-arabinose isomerase (EC 5.3.1.4)
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Position: -33
Score: 5.2 Sequence: ATGAAAGCGTATACAA
Locus tag: BPUM_0710
Name: citM Funciton: Mg(2+) Citrate transporter (TC 2.A.11.1.1) |
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citM
|
Mg(2+) Citrate transporter (TC 2.A.11.1.1)
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Position: -73
Score: 4.8 Sequence: TTGTAAACGATTACAA
Locus tag: BPUM_2987
Name: uxaC Funciton: Uronate isomerase (EC 5.3.1.12) |
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uxaC
|
Uronate isomerase (EC 5.3.1.12)
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Position: -52
Score: 4.9 Sequence: ATGAAAGCGGTTTTAT
Locus tag: BPUM_2986
Name: exuR Funciton: Transcriptional repressor of hexuronate utilization operon, LacI family
Locus tag: BPUM_2985
Name: uxaB Funciton: Altronate oxidoreductase (EC 1.1.1.58)
Locus tag: BPUM_2984
Name: uxaA Funciton: Altronate hydrolase (EC 4.2.1.7)
Locus tag: BPUM_2983
Name: null Funciton: Polygalacturonase (EC 3.2.1.15) |
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exuR
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Transcriptional repressor of hexuronate utilization operon, LacI family
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uxaB
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Altronate oxidoreductase (EC 1.1.1.58)
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uxaA
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Altronate hydrolase (EC 4.2.1.7)
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Polygalacturonase (EC 3.2.1.15)
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Position: -215
Score: 5 Sequence: ATGTAAGCGCTACCAA
Locus tag: BPUM_0644
Name: gatC Funciton: Aspartyl (EC 6.3.5.6)/Glutamyl (EC 6.3.5.7) -tRNA amidotransferase subunit C
Locus tag: BPUM_0645
Name: gatA Funciton: Aspartyl (EC 6.3.5.6)/Glutamyl (EC 6.3.5.7) -tRNA amidotransferase subunit A
Locus tag: BPUM_0646
Name: gatB Funciton: Aspartyl (EC 6.3.5.6)/Glutamyl (EC 6.3.5.7) -tRNA amidotransferase subunit B |
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gatC
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Aspartyl (EC 6.3.5.6)/Glutamyl (EC 6.3.5.7) -tRNA amidotransferase subunit C
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gatA
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Aspartyl (EC 6.3.5.6)/Glutamyl (EC 6.3.5.7) -tRNA amidotransferase subunit A
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gatB
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Aspartyl (EC 6.3.5.6)/Glutamyl (EC 6.3.5.7) -tRNA amidotransferase subunit B
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Position: -90
Score: 5.1 Sequence: TTGAAAGCGCTTTATA
Locus tag: BPUM_1832
Name: xynP Funciton: Putative H+-xyloside symporter
Locus tag: BPUM_1831
Name: xynB Funciton: Beta-xylosidase (EC 3.2.1.37) |
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xynP
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Putative H+-xyloside symporter
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xynB
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Beta-xylosidase (EC 3.2.1.37)
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Position: -111
Score: 4.6 Sequence: ATGTAAGCATTTTCTT
Position: -69
Score: 4.5 Sequence: TGGATAGCGCTTTCAA
Locus tag: BPUM_2556
Name: citZ Funciton: Citrate synthase (si) (EC 2.3.3.1)
Locus tag: BPUM_2555
Name: icd Funciton: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)
Locus tag: BPUM_2554
Name: mdh Funciton: Malate dehydrogenase (EC 1.1.1.37) |
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citZ
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Citrate synthase (si) (EC 2.3.3.1)
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icd
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Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)
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mdh
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Malate dehydrogenase (EC 1.1.1.37)
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Position: -43
Score: 4.3 Sequence: ATGTAAGCCTATACAT
Locus tag: BPUM_2004
Name: ndk Funciton: Nucleoside diphosphate kinase (EC 2.7.4.6) |
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ndk
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Nucleoside diphosphate kinase (EC 2.7.4.6)
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Position: -32
Score: 4.9 Sequence: ATGTAAGCGGTAACAA
Locus tag: BPUM_3373
Name: mmgA Funciton: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
Locus tag: BPUM_3372
Name: mmgB Funciton: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)
Locus tag: BPUM_3371
Name: mmgC Funciton: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
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mmgA
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3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
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mmgB
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3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)
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mmgC
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Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
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Position: -111
Score: 4.6 Sequence: ATGTAAGCATTTTCTT
Position: -69
Score: 4.5 Sequence: TGGATAGCGCTTTCAA
Locus tag: BPUM_2556
Name: mmgD Funciton: Citrate synthase (si) (EC 2.3.3.1) |
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mmgD
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Citrate synthase (si) (EC 2.3.3.1)
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Position: -122
Score: 4.7 Sequence: AAGAAAGCGATTTCAA
Position: -64
Score: 4.3 Sequence: TTGAAACCGATACCAA
Locus tag: BPUM_3246
Name: kduI Funciton: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17)
Locus tag: BPUM_3247
Name: kduD Funciton: 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125) |
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kduI
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4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17)
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kduD
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2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125)
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Position: -72
Score: 4.8 Sequence: TTGAAATCGCTATCAT
Locus tag: BPUM_0419
Name: dctA Funciton: C4-dicarboxylate transport protein |
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dctA
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C4-dicarboxylate transport protein
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Position: -100
Score: 4.9 Sequence: TTGTAAGCGCTATAAT
Locus tag: BPUM_3415
Name: pta Funciton: Phosphate acetyltransferase (EC 2.3.1.8) |
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pta
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Phosphate acetyltransferase (EC 2.3.1.8)
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Position: -320
Score: 4.6 Sequence: AAGAAAGCGTTGACAT
Locus tag: BPUM_3566
Name: bglP Funciton: PTS system, aryl-phospho-beta-glucoside-specific component IIABC (EC 2.7.1.69)
Locus tag: BPUM_3565
Name: bglH Funciton: Aryl-phospho-beta-D-glucosidase (EC 3.2.1.86) |
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bglP
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PTS system, aryl-phospho-beta-glucoside-specific component IIABC (EC 2.7.1.69)
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bglH
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Aryl-phospho-beta-D-glucosidase (EC 3.2.1.86)
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Position: -145
Score: 5.1 Sequence: ATGAAAGCGTAATCAA
Locus tag: BPUM_3452
Name: sacP Funciton: PTS sucrose-specific enzyme IIBC component
Locus tag: BPUM_3451
Name: sacA Funciton: Sucrose-6-phosphate hydrolase (EC 3.2.1.26) |
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sacP
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PTS sucrose-specific enzyme IIBC component
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sacA
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Sucrose-6-phosphate hydrolase (EC 3.2.1.26)
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Position: -32
Score: 4.5 Sequence: TTGAAACCGGTACCAA
Locus tag: BPUM_3244
Name: kdgK Funciton: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)
Locus tag: BPUM_3243
Name: kdgA Funciton: 4-Hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) / 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) |
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kdgK
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2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)
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kdgA
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4-Hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) / 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
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Position: -53
Score: 4.2 Sequence: TTGAAATCGGTTTCGA
Locus tag: BPUM_3245
Name: kdgR Funciton: Transcriptional regulator of pectin utilization, LacI family |
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kdgR
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Transcriptional regulator of pectin utilization, LacI family
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Position: -166
Score: 4.8 Sequence: TTGAAGGCGTTTTCAT
Locus tag: BPUM_1404
Name: apbA Funciton: 2-dehydropantoate 2-reductase (EC 1.1.1.169)
Locus tag: BPUM_1405
Name: yllA Funciton: Hypothetical membrane spanning protein |
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apbA
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2-dehydropantoate 2-reductase (EC 1.1.1.169)
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yllA
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Hypothetical membrane spanning protein
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Position: -104
Score: 4.9 Sequence: AAGAAAGCGTTATCAA
Locus tag: BPUM_0182
Name: glpT Funciton: MFS family major facilitator transporter, glycerol-3-phosphate:cation symporter
Locus tag: BPUM_0181
Name: glpQ Funciton: Glycerophosphoryl diester phosphodiesterase, periplasmic (EC 3.1.4.46) |
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glpT
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MFS family major facilitator transporter, glycerol-3-phosphate:cation symporter
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glpQ
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Glycerophosphoryl diester phosphodiesterase, periplasmic (EC 3.1.4.46)
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Position: 318
Score: 4 Sequence: GTGAAAACGCTTGCGG
Locus tag: BPUM_0728
Name: treP Funciton: PTS system, trehalose-specific enzyme II, BC component (EC 2.7.1.69)
Locus tag: BPUM_0729
Name: treA Funciton: Trehalose-6-phosphate hydrolase (EC 3.2.1.93)
Locus tag: BPUM_0730
Name: treR Funciton: Transcriptional repressor of trehalose operon, GntR family |
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treP
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PTS system, trehalose-specific enzyme II, BC component (EC 2.7.1.69)
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treA
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Trehalose-6-phosphate hydrolase (EC 3.2.1.93)
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treR
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Transcriptional repressor of trehalose operon, GntR family
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Position: 0
Score: 4.6 Sequence: ATGAATGCGGTTACAA
Locus tag: BPUM_2525
Name: cstA Funciton: Carbon starvation-induced membrane protein |
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cstA
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Carbon starvation-induced membrane protein
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Position: -101
Score: 4.7 Sequence: TTGGAAGCGTTTTATT
Locus tag: BPUM_1862
Name: odhA Funciton: 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)
Locus tag: BPUM_1861
Name: odhB Funciton: 2-oxoglutarate dehydrogenase E2 component |
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odhA
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2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)
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odhB
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2-oxoglutarate dehydrogenase E2 component
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Position: 247
Score: 4.4 Sequence: TTGAAATCGCTTACGT
Locus tag: BPUM_3468
Name: galK Funciton: Galactokinase (EC 2.7.1.6)
Locus tag: BPUM_3467
Name: galE Funciton: UDP-glucose 4-epimerase (EC 5.1.3.2)
Locus tag: BPUM_3466
Name: galT Funciton: Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10) |
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galK
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Galactokinase (EC 2.7.1.6)
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galE
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UDP-glucose 4-epimerase (EC 5.1.3.2)
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galT
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Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10)
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Position: -116
Score: 4.5 Sequence: ATGAAAGCGTTAAACT
Locus tag: BPUM_1387
Name: ylbB Funciton: CBS domain protein
Locus tag: BPUM_1388
Name: ylbC Funciton: Uncharacterized secreted protein with SCP domain |
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ylbB
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CBS domain protein
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ylbC
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Uncharacterized secreted protein with SCP domain
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Position: -37
Score: 4.2 Sequence: CTGGAAGCGCTTTTAT
Locus tag: BPUM_2121
Name: gmuB Funciton: PTS system, cellobiose-specific IIB component (EC 2.7.1.69)
Locus tag: BPUM_2120
Name: gmuA Funciton: PTS system, cellobiose-specific IIA component (EC 2.7.1.69)
Locus tag: BPUM_2119
Name: gmuC Funciton: PTS system, cellobiose-specific IIC component (EC 2.7.1.69)
Locus tag: BPUM_2118
Name: gmuD Funciton: Beta-glucosidase (EC 3.2.1.21)
Locus tag: BPUM_2117
Name: gmuR Funciton: Transcriptional regulator of glucomannan utilization, GntR family |
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gmuB
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PTS system, cellobiose-specific IIB component (EC 2.7.1.69)
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gmuA
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PTS system, cellobiose-specific IIA component (EC 2.7.1.69)
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gmuC
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PTS system, cellobiose-specific IIC component (EC 2.7.1.69)
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gmuD
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Beta-glucosidase (EC 3.2.1.21)
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gmuR
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Transcriptional regulator of glucomannan utilization, GntR family
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Position: -37
Score: 4.9 Sequence: TTGATAACGCTTACAA
Locus tag: BPUM_3238
Name: BPUM_3238 Funciton: Predicted beta-glucoside-regulated ABC transport system, sugar-binding protein
Locus tag: BPUM_3237
Name: BPUM_3237 Funciton: Predicted beta-glucoside-regulated ABC transport system, permease component 1
Locus tag: BPUM_3236
Name: BPUM_3236 Funciton: Predicted beta-glucoside-regulated ABC transport system, permease component 2
Locus tag: BPUM_3235
Name: pmi Funciton: Mannose-6-phosphate isomerase (EC 5.3.1.8) |
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BPUM_3238
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Predicted beta-glucoside-regulated ABC transport system, sugar-binding protein
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BPUM_3237
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Predicted beta-glucoside-regulated ABC transport system, permease component 1
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BPUM_3236
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Predicted beta-glucoside-regulated ABC transport system, permease component 2
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pmi
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Mannose-6-phosphate isomerase (EC 5.3.1.8)
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Position: -78
Score: 4.4 Sequence: TTGAAAGCGCTTTACC
Locus tag: BPUM_1754
Name: msmR Funciton: Transcriptional regulator of alpha-galactoside utilization, LacI family
Locus tag: BPUM_1753
Name: msmE Funciton: Multiple sugar ABC transporter, substrate-binding protein
Locus tag: BPUM_1752
Name: msmF Funciton: Multiple sugar ABC transporter, membrane-spanning permease protein MsmF
Locus tag: BPUM_1751
Name: msmG Funciton: Multiple sugar ABC transporter, membrane-spanning permease protein MsmG
Locus tag: BPUM_1750
Name: melA Funciton: Alpha-galactosidase (EC 3.2.1.22) |
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msmR
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Transcriptional regulator of alpha-galactoside utilization, LacI family
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msmE
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Multiple sugar ABC transporter, substrate-binding protein
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msmF
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Multiple sugar ABC transporter, membrane-spanning permease protein MsmF
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msmG
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Multiple sugar ABC transporter, membrane-spanning permease protein MsmG
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melA
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Alpha-galactosidase (EC 3.2.1.22)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |