Regulon of CcpA in Bacillus pumilus SAFR-032

Properties
Regulator type:	Transcription factor
TF locus tag:	BPUM_2620
Regulator family:	LacI
Regulation mode:
Biological process:	Carbon catabolism
Effector:	HPr, phosphocarrier protein
Regulog:	CcpA - Bacillales
Statistics of regulated genes:
- Genes	146
- Operons	66
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 559 sites [see more]

Member of regulog collections

By taxonomy - Bacillales
By trascription factor - CcpA
By TF family - LacI
By effector - HPr, phosphocarrier protein
By pathway - Carbon catabolism

Regulated operons
	Locus Tag	Name	Function
Position: 411 Score: 5.2 Sequence: ATGAAAGCGCTGACAA Locus tag: BPUM_2513 Name: lcfA Funciton: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
	BPUM_2513	lcfA	Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Position: -76 Score: 4.6 Sequence: ATGTAAATGTTTACAT Locus tag: BPUM_2208 Name: yqgY Funciton: Uncharacterized short membrane protein
	BPUM_2208	yqgY	Uncharacterized short membrane protein
Position: -40 Score: 4.8 Sequence: ATGAAAACGGTTAAAA Locus tag: BPUM_2210 Name: yqgW Funciton: Alkaliphily related protein
	BPUM_2210	yqgW	Alkaliphily related protein
Position: -59 Score: 5.1 Sequence: TTGAAAGCGCTTTTAT Locus tag: BPUM_0455 Name: acoR Funciton: Transcriptional activator of acetoin dehydrogenase operon AcoR
	BPUM_0455	acoR	Transcriptional activator of acetoin dehydrogenase operon AcoR
Position: -68 Score: 4.5 Sequence: TTGTAAACGCTTCATT Locus tag: BPUM_2534 Name: lrgA Funciton: Antiholin-like protein LrgA Locus tag: BPUM_2533 Name: lrgB Funciton: LrgA-associated membrane protein LrgB
	BPUM_2534	lrgA	Antiholin-like protein LrgA
	BPUM_2533	lrgB	LrgA-associated membrane protein LrgB
Position: -82 Score: 4.5 Sequence: TTGTAAACGGTTTATA Locus tag: BPUM_2081 Name: drm Funciton: Phosphopentomutase (EC 5.4.2.7) Locus tag: BPUM_2080 Name: punA Funciton: Purine nucleoside phosphorylase (EC 2.4.2.1)
	BPUM_2081	drm	Phosphopentomutase (EC 5.4.2.7)
	BPUM_2080	punA	Purine nucleoside phosphorylase (EC 2.4.2.1)
Position: -31 Score: 4.5 Sequence: ATGTAAACGAATTCAT Locus tag: BPUM_3586 Name: nupC Funciton: Nucleoside permease NupC Locus tag: BPUM_3585 Name: pdp Funciton: Pyrimidine-nucleoside phosphorylase (EC 2.4.2.2)
	BPUM_3586	nupC	Nucleoside permease NupC
	BPUM_3585	pdp	Pyrimidine-nucleoside phosphorylase (EC 2.4.2.2)
Position: -106 Score: 4.1 Sequence: GTGAAAGCGTTTTACG Locus tag: BPUM_0369 Name: mtlA Funciton: PTS family mannitol-permease II, BC component Locus tag: BPUM_0370 Name: mtlF Funciton: PTS mannitol-specific enzyme IIA component Locus tag: BPUM_0371 Name: mtlD Funciton: Mannitol-1-phosphate 5-dehydrogenase (EC 1.1.1.17)
	BPUM_0369	mtlA	PTS family mannitol-permease II, BC component
	BPUM_0370	mtlF	PTS mannitol-specific enzyme IIA component
	BPUM_0371	mtlD	Mannitol-1-phosphate 5-dehydrogenase (EC 1.1.1.17)
Position: -60 Score: 5 Sequence: TTGAAAGCGTTTTATA Locus tag: BPUM_0388 Name: mtlR Funciton: Mannitol operon activator, BglG family
	BPUM_0388	mtlR	Mannitol operon activator, BglG family
Position: -254 Score: 4.9 Sequence: TTGATAGCGGTTTCAA Locus tag: BPUM_2330 Name: araR Funciton: Transcriptional repressor of arabinoside utilization operon, GntR family
	BPUM_2330	araR	Transcriptional repressor of arabinoside utilization operon, GntR family
Position: -51 Score: 4.8 Sequence: AAGAAAGCGTTTTCTT Locus tag: BPUM_3613 Name: cycB Funciton: Maltose/maltodextrin ABC transporter, substrate binding periplasmic protein Locus tag: BPUM_3614 Name: ganP Funciton: Maltose/maltodextrin ABC transporter, permease protein Locus tag: BPUM_3615 Name: ganQ Funciton: ABC-type maltose/maltodextrin transport system, permease component Locus tag: BPUM_3616 Name: yvfO Funciton: Extracellular arabinogalactan endo-1,4-beta-galactosidase (EC 3.2.1.89) Locus tag: BPUM_3617 Name: ganA Funciton: Beta-galactosidase (EC 3.2.1.23)
	BPUM_3613	cycB	Maltose/maltodextrin ABC transporter, substrate binding periplasmic protein
	BPUM_3614	ganP	Maltose/maltodextrin ABC transporter, permease protein
	BPUM_3615	ganQ	ABC-type maltose/maltodextrin transport system, permease component
	BPUM_3616	yvfO	Extracellular arabinogalactan endo-1,4-beta-galactosidase (EC 3.2.1.89)
	BPUM_3617	ganA	Beta-galactosidase (EC 3.2.1.23)
Position: -74 Score: 4.4 Sequence: GTGAAACCGTTTTAAT Locus tag: BPUM_2617 Name: acuA Funciton: Acetyltransferase AcuA, acetyl-CoA synthetase inhibitor Locus tag: BPUM_2618 Name: acuB Funciton: Component of the acetoin degradation regulation pathway Locus tag: BPUM_2619 Name: acuC Funciton: Acetoin dehydrogenase
	BPUM_2617	acuA	Acetyltransferase AcuA, acetyl-CoA synthetase inhibitor
	BPUM_2618	acuB	Component of the acetoin degradation regulation pathway
	BPUM_2619	acuC	Acetoin dehydrogenase
Position: -156 Score: 4.5 Sequence: ATTATAGCGCTTACAA Locus tag: BPUM_3416 Name: ywfI Funciton: Predicted heme peroxidase involved in anaerobic stress response
	BPUM_3416	ywfI	Predicted heme peroxidase involved in anaerobic stress response
Position: -59 Score: 5.1 Sequence: ATGAAAGCGTTTAAAT Locus tag: BPUM_2978 Name: dapA Funciton: Dihydrodipicolinate synthase family Locus tag: BPUM_2977 Name: eutG Funciton: Alcohol dehydrogenase (EC 1.1.1.1) Locus tag: BPUM_2976 Name: BPUM_2976 Funciton: Probable sodium:solute symporter Locus tag: BPUM_2975 Name: BPUM_2975 Funciton: Hypothetical protein Locus tag: BPUM_2974 Name: BLi03703 Funciton: Sigma-L-dependent transcriptional regulator Locus tag: BPUM_2973 Name: hop Funciton: Candidate type III effector Hop protein Locus tag: BPUM_2972 Name: pdxA Funciton: 4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262)
	BPUM_2978	dapA	Dihydrodipicolinate synthase family
	BPUM_2977	eutG	Alcohol dehydrogenase (EC 1.1.1.1)
	BPUM_2976	BPUM_2976	Probable sodium:solute symporter
	BPUM_2975	BPUM_2975	Hypothetical protein
	BPUM_2974	BLi03703	Sigma-L-dependent transcriptional regulator
	BPUM_2973	hop	Candidate type III effector Hop protein
	BPUM_2972	pdxA	4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262)
Position: -58 Score: 4.8 Sequence: ATGAAAACGCCTTCAA Locus tag: BPUM_1403 Name: ylbP Funciton: Uncharacterized N-acetyltransferase (EC 2.3.1.-)
	BPUM_1403	ylbP	Uncharacterized N-acetyltransferase (EC 2.3.1.-)
Position: -104 Score: 4.9 Sequence: TTGAAAGGGTTTTCAA Locus tag: BPUM_1233 Name: ykoM Funciton: Putative transcriptional regulator, MarR family
	BPUM_1233	ykoM	Putative transcriptional regulator, MarR family
Position: -57 Score: 4.8 Sequence: ATGAAAGCGCAGTCTA Locus tag: BPUM_1507 Name: sucC Funciton: Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) Locus tag: BPUM_1508 Name: sucD Funciton: Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5)
	BPUM_1507	sucC	Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)
	BPUM_1508	sucD	Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5)
Position: -49 Score: 4.2 Sequence: CTGAAAGCGCATTTAT Locus tag: BPUM_2216 Name: yqgQ Funciton: Hypothetical Cytosolic Protein Locus tag: BPUM_2215 Name: glcK Funciton: Glucokinase (EC 2.7.1.2)
	BPUM_2216	yqgQ	Hypothetical Cytosolic Protein
	BPUM_2215	glcK	Glucokinase (EC 2.7.1.2)
Position: -41 Score: 4.1 Sequence: AGTGAAGCGCTTTCAA Locus tag: BPUM_0922 Name: msmX Funciton: Maltose/maltodextrin transport ATP-binding protein (EC 3.6.3.19)
	BPUM_0922	msmX	Maltose/maltodextrin transport ATP-binding protein (EC 3.6.3.19)
Position: -103 Score: 4.4 Sequence: TTTTAACCGTTTTCAT Locus tag: BPUM_2209 Name: yqgX Funciton: Similar to Hydroxyacylglutathione hydrolase, but in an organism lacking glutathione biosynthesis
	BPUM_2209	yqgX	Similar to Hydroxyacylglutathione hydrolase, but in an organism lacking glutathione biosynthesis
Position: -216 Score: 5.2 Sequence: ATGTAAGCGTTTTCTT Locus tag: BPUM_0244 Name: glsA1 Funciton: Glutaminase (EC 3.5.1.2) Locus tag: BPUM_0243 Name: glnT Funciton: Glutamine permease
	BPUM_0244	glsA1	Glutaminase (EC 3.5.1.2)
	BPUM_0243	glnT	Glutamine permease
Position: -35 Score: 4.7 Sequence: ATGAAAGCGGTTAATT Locus tag: BPUM_2326 Name: araE Funciton: Arabinose-proton symporter
	BPUM_2326	araE	Arabinose-proton symporter
Position: -200 Score: 4.6 Sequence: GTGTAAGCGTATACAT Locus tag: BPUM_2473 Name: dat Funciton: Branched-chain amino acid aminotransferase (EC 2.6.1.42)
	BPUM_2473	dat	Branched-chain amino acid aminotransferase (EC 2.6.1.42)
Position: -35 Score: 4.8 Sequence: ATGTAAACGCTTACCA Locus tag: BPUM_1785 Name: yngI Funciton: Long-chain fatty-acid-CoA ligase (EC 6.2.1.3) Locus tag: BPUM_1784 Name: yngH Funciton: Biotin carboxylase of methylcrotonyl-CoA carboxylase (EC 6.3.4.14) Locus tag: BPUM_1783 Name: yngHB Funciton: Biotin carboxyl carrier protein of methylcrotonyl-CoA carboxylase ( EC:6.4.1.2 ) Locus tag: BPUM_1782 Name: yngG Funciton: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) Locus tag: BPUM_1781 Name: yngF Funciton: Methylglutaconyl-CoA hydratase (EC 4.2.1.18) Locus tag: BPUM_1780 Name: yngE Funciton: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) Locus tag: BPUM_1779 Name: acsA2 Funciton: Acetoacetyl-CoA synthetase [leucine] (EC 6.2.1.16)
	BPUM_1785	yngI	Long-chain fatty-acid-CoA ligase (EC 6.2.1.3)
	BPUM_1784	yngH	Biotin carboxylase of methylcrotonyl-CoA carboxylase (EC 6.3.4.14)
	BPUM_1783	yngHB	Biotin carboxyl carrier protein of methylcrotonyl-CoA carboxylase ( EC:6.4.1.2 )
	BPUM_1782	yngG	Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
	BPUM_1781	yngF	Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
	BPUM_1780	yngE	Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
	BPUM_1779	acsA2	Acetoacetyl-CoA synthetase [leucine] (EC 6.2.1.16)
Position: -120 Score: 4.6 Sequence: ATGAAAGCGGTTGCCT Position: -32 Score: 4.5 Sequence: ATGTAAACGGTTTATT Locus tag: BPUM_3618 Name: citMII Funciton: Magnesium citrate secondary transporter
	BPUM_3618	citMII	Magnesium citrate secondary transporter
Position: -221 Score: 4.6 Sequence: AAGAAAGCGTTGACAT Locus tag: BPUM_0209 Name: bglP1 Funciton: PTS system, beta-glucoside-specific enzyme II, ABC component Locus tag: BPUM_0210 Name: bglB Funciton: Beta-glucosidase (EC 3.2.1.21); 6-phospho-beta-glucosidase (EC 3.2.1.86)
	BPUM_0209	bglP1	PTS system, beta-glucoside-specific enzyme II, ABC component
	BPUM_0210	bglB	Beta-glucosidase (EC 3.2.1.21); 6-phospho-beta-glucosidase (EC 3.2.1.86)
Position: -35 Score: 4.6 Sequence: TTGTAAACGAATTCAA Locus tag: BPUM_0145 Name: mrp Funciton: Scaffold protein for [4Fe-4S] cluster assembly ApbC, MRP-like
	BPUM_0145	mrp	Scaffold protein for [4Fe-4S] cluster assembly ApbC, MRP-like
Position: -28 Score: 5 Sequence: ATGATAACGCTTTCAA Locus tag: BPUM_2666 Name: ytcP Funciton: ABC superfamily ATP binding cassette transporter, membrane protein Locus tag: BPUM_2665 Name: ytcQ Funciton: Sugar ABC transporter substrate-binding protein
	BPUM_2666	ytcP	ABC superfamily ATP binding cassette transporter, membrane protein
	BPUM_2665	ytcQ	Sugar ABC transporter substrate-binding protein
Position: 951 Score: 4.7 Sequence: ATGAAACCGCTTACGA Locus tag: BPUM_3063 Name: sigL Funciton: DNA-directed RNA polymerase sigma subunit SigL
	BPUM_3063	sigL	DNA-directed RNA polymerase sigma subunit SigL
Position: -330 Score: 4.8 Sequence: ATGAAAACGCTTTTTT Locus tag: BPUM_2252 Name: cccA Funciton: Membrane-attached cytochrome c550
	BPUM_2252	cccA	Membrane-attached cytochrome c550
Position: -180 Score: 4.7 Sequence: ATGTAAGCGGTAACAG Locus tag: BPUM_2579 Name: ackA Funciton: Acetate kinase (EC 2.7.2.1)
	BPUM_2579	ackA	Acetate kinase (EC 2.7.2.1)
Position: 415 Score: 4.9 Sequence: ATGTAAGCGTTTGCTT Locus tag: BPUM_0451 Name: acoA Funciton: Acetoin dehydrogenase E1 component alpha-subunit (EC 1.2.4.-) Locus tag: BPUM_0452 Name: acoB Funciton: Acetoin dehydrogenase E1 component beta-subunit (EC 1.2.4.-) Locus tag: BPUM_0453 Name: acoC Funciton: Dihydrolipoamide acetyltransferase component (E2) of acetoin dehydrogenase complex (EC 2.3.1.-) Locus tag: BPUM_0454 Name: acoL Funciton: Dihydrolipoamide dehydrogenase of acetoin dehydrogenase (EC 1.8.1.4)
	BPUM_0451	acoA	Acetoin dehydrogenase E1 component alpha-subunit (EC 1.2.4.-)
	BPUM_0452	acoB	Acetoin dehydrogenase E1 component beta-subunit (EC 1.2.4.-)
	BPUM_0453	acoC	Dihydrolipoamide acetyltransferase component (E2) of acetoin dehydrogenase complex (EC 2.3.1.-)
	BPUM_0454	acoL	Dihydrolipoamide dehydrogenase of acetoin dehydrogenase (EC 1.8.1.4)
Position: -30 Score: 4.7 Sequence: TTGTAAACGTATGCAA Locus tag: BPUM_2616 Name: acsA Funciton: Acetyl-coenzyme A synthetase (EC 6.2.1.1)
	BPUM_2616	acsA	Acetyl-coenzyme A synthetase (EC 6.2.1.1)
Position: -38 Score: 5 Sequence: AAGAAAACGCTTTCAA Locus tag: BPUM_0463 Name: bglS Funciton: Endo-beta-1,3-1,4 glucanase (Licheninase) (EC 3.2.1.73)
	BPUM_0463	bglS	Endo-beta-1,3-1,4 glucanase (Licheninase) (EC 3.2.1.73)
Position: -71 Score: 5.3 Sequence: ATGAAAGCGGTTTCAT Locus tag: BPUM_3506 Name: licB Funciton: PTS system, lichenan-specific IIB component (EC 2.7.1.69); PTS system, cellobiose-specific IIB component (EC 2.7.1.69) Locus tag: BPUM_3505 Name: licC Funciton: PTS system, lichenan-specific IIC component (EC 2.7.1.69) Locus tag: BPUM_3504 Name: licA Funciton: PTS system, lichenan-specific IIA component (EC 2.7.1.69) Locus tag: BPUM_3503 Name: licH Funciton: 6-phospho-beta-glucosidase (EC 3.2.1.86)
	BPUM_3506	licB	PTS system, lichenan-specific IIB component (EC 2.7.1.69); PTS system, cellobiose-specific IIB component (EC 2.7.1.69)
	BPUM_3505	licC	PTS system, lichenan-specific IIC component (EC 2.7.1.69)
	BPUM_3504	licA	PTS system, lichenan-specific IIA component (EC 2.7.1.69)
	BPUM_3503	licH	6-phospho-beta-glucosidase (EC 3.2.1.86)
Position: -30 Score: 4.7 Sequence: ATGAATACGTTTTCAA Locus tag: BPUM_1334 Name: fruR Funciton: Transcriptional regulator of fructose utilization, DeoR family Locus tag: BPUM_1335 Name: fruK Funciton: Tagatose-6-phosphate kinase (EC 2.7.1.144) / 1-phosphofructokinase (EC 2.7.1.56) Locus tag: BPUM_1336 Name: fruA Funciton: PTS system fructose-specific enzyme II, ABC subunits (EC 2.7.1.69)
	BPUM_1334	fruR	Transcriptional regulator of fructose utilization, DeoR family
	BPUM_1335	fruK	Tagatose-6-phosphate kinase (EC 2.7.1.144) / 1-phosphofructokinase (EC 2.7.1.56)
	BPUM_1336	fruA	PTS system fructose-specific enzyme II, ABC subunits (EC 2.7.1.69)
Position: -38 Score: 4.2 Sequence: GTGTAAACGGTTACAC Locus tag: BPUM_3263 Name: rbsR Funciton: Ribose operon repressor, LacI family Locus tag: BPUM_3264 Name: rbsK Funciton: Ribokinase (EC 2.7.1.15) Locus tag: BPUM_3265 Name: rbsD Funciton: Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1) Locus tag: BPUM_3266 Name: rbsA Funciton: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1) Locus tag: BPUM_3267 Name: rbsC Funciton: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) Locus tag: BPUM_3268 Name: rbsB Funciton: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)
	BPUM_3263	rbsR	Ribose operon repressor, LacI family
	BPUM_3264	rbsK	Ribokinase (EC 2.7.1.15)
	BPUM_3265	rbsD	Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1)
	BPUM_3266	rbsA	Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)
	BPUM_3267	rbsC	Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)
	BPUM_3268	rbsB	Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)
Position: -139 Score: 4.2 Sequence: ATGTACGCGGTTTCTT Locus tag: BPUM_2503 Name: sdhC Funciton: Succinate dehydrogenase cytochrome b558 subunit Locus tag: BPUM_2502 Name: sdhA Funciton: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) Locus tag: BPUM_2501 Name: sdhB Funciton: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) Locus tag: BPUM_2500 Name: ysmA Funciton: 4-hydroxybenzoyl-CoA thioesterase, putative
	BPUM_2503	sdhC	Succinate dehydrogenase cytochrome b558 subunit
	BPUM_2502	sdhA	Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
	BPUM_2501	sdhB	Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
	BPUM_2500	ysmA	4-hydroxybenzoyl-CoA thioesterase, putative
Position: -191 Score: 4.9 Sequence: TTGACAACGTTTTCAT Locus tag: BPUM_0882 Name: glpF Funciton: Glycerol uptake facilitator protein Locus tag: BPUM_0883 Name: glpK Funciton: Glycerol kinase (EC 2.7.1.30)
	BPUM_0882	glpF	Glycerol uptake facilitator protein
	BPUM_0883	glpK	Glycerol kinase (EC 2.7.1.30)
Position: -35 Score: 5 Sequence: TTGAAACCGCTATCAA Locus tag: BPUM_2329 Name: null Funciton: Ribulokinase (EC 2.7.1.16) Locus tag: BPUM_2328 Name: araD Funciton: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) Locus tag: BPUM_2327 Name: araA Funciton: L-arabinose isomerase (EC 5.3.1.4)
	BPUM_2329		Ribulokinase (EC 2.7.1.16)
	BPUM_2328	araD	L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)
	BPUM_2327	araA	L-arabinose isomerase (EC 5.3.1.4)
Position: -33 Score: 5.2 Sequence: ATGAAAGCGTATACAA Locus tag: BPUM_0710 Name: citM Funciton: Mg(2+) Citrate transporter (TC 2.A.11.1.1)
	BPUM_0710	citM	Mg(2+) Citrate transporter (TC 2.A.11.1.1)
Position: -73 Score: 4.8 Sequence: TTGTAAACGATTACAA Locus tag: BPUM_2987 Name: uxaC Funciton: Uronate isomerase (EC 5.3.1.12)
	BPUM_2987	uxaC	Uronate isomerase (EC 5.3.1.12)
Position: -52 Score: 4.9 Sequence: ATGAAAGCGGTTTTAT Locus tag: BPUM_2986 Name: exuR Funciton: Transcriptional repressor of hexuronate utilization operon, LacI family Locus tag: BPUM_2985 Name: uxaB Funciton: Altronate oxidoreductase (EC 1.1.1.58) Locus tag: BPUM_2984 Name: uxaA Funciton: Altronate hydrolase (EC 4.2.1.7) Locus tag: BPUM_2983 Name: null Funciton: Polygalacturonase (EC 3.2.1.15)
	BPUM_2986	exuR	Transcriptional repressor of hexuronate utilization operon, LacI family
	BPUM_2985	uxaB	Altronate oxidoreductase (EC 1.1.1.58)
	BPUM_2984	uxaA	Altronate hydrolase (EC 4.2.1.7)
	BPUM_2983		Polygalacturonase (EC 3.2.1.15)
Position: -215 Score: 5 Sequence: ATGTAAGCGCTACCAA Locus tag: BPUM_0644 Name: gatC Funciton: Aspartyl (EC 6.3.5.6)/Glutamyl (EC 6.3.5.7) -tRNA amidotransferase subunit C Locus tag: BPUM_0645 Name: gatA Funciton: Aspartyl (EC 6.3.5.6)/Glutamyl (EC 6.3.5.7) -tRNA amidotransferase subunit A Locus tag: BPUM_0646 Name: gatB Funciton: Aspartyl (EC 6.3.5.6)/Glutamyl (EC 6.3.5.7) -tRNA amidotransferase subunit B
	BPUM_0644	gatC	Aspartyl (EC 6.3.5.6)/Glutamyl (EC 6.3.5.7) -tRNA amidotransferase subunit C
	BPUM_0645	gatA	Aspartyl (EC 6.3.5.6)/Glutamyl (EC 6.3.5.7) -tRNA amidotransferase subunit A
	BPUM_0646	gatB	Aspartyl (EC 6.3.5.6)/Glutamyl (EC 6.3.5.7) -tRNA amidotransferase subunit B
Position: -90 Score: 5.1 Sequence: TTGAAAGCGCTTTATA Locus tag: BPUM_1832 Name: xynP Funciton: Putative H+-xyloside symporter Locus tag: BPUM_1831 Name: xynB Funciton: Beta-xylosidase (EC 3.2.1.37)
	BPUM_1832	xynP	Putative H+-xyloside symporter
	BPUM_1831	xynB	Beta-xylosidase (EC 3.2.1.37)
Position: -111 Score: 4.6 Sequence: ATGTAAGCATTTTCTT Position: -69 Score: 4.5 Sequence: TGGATAGCGCTTTCAA Locus tag: BPUM_2556 Name: citZ Funciton: Citrate synthase (si) (EC 2.3.3.1) Locus tag: BPUM_2555 Name: icd Funciton: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) Locus tag: BPUM_2554 Name: mdh Funciton: Malate dehydrogenase (EC 1.1.1.37)
	BPUM_2556	citZ	Citrate synthase (si) (EC 2.3.3.1)
	BPUM_2555	icd	Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)
	BPUM_2554	mdh	Malate dehydrogenase (EC 1.1.1.37)
Position: -43 Score: 4.3 Sequence: ATGTAAGCCTATACAT Locus tag: BPUM_2004 Name: ndk Funciton: Nucleoside diphosphate kinase (EC 2.7.4.6)
	BPUM_2004	ndk	Nucleoside diphosphate kinase (EC 2.7.4.6)
Position: -32 Score: 4.9 Sequence: ATGTAAGCGGTAACAA Locus tag: BPUM_3373 Name: mmgA Funciton: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16) Locus tag: BPUM_3372 Name: mmgB Funciton: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157) Locus tag: BPUM_3371 Name: mmgC Funciton: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
	BPUM_3373	mmgA	3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
	BPUM_3372	mmgB	3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)
	BPUM_3371	mmgC	Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Position: -111 Score: 4.6 Sequence: ATGTAAGCATTTTCTT Position: -69 Score: 4.5 Sequence: TGGATAGCGCTTTCAA Locus tag: BPUM_2556 Name: mmgD Funciton: Citrate synthase (si) (EC 2.3.3.1)
	BPUM_2556	mmgD	Citrate synthase (si) (EC 2.3.3.1)
Position: -122 Score: 4.7 Sequence: AAGAAAGCGATTTCAA Position: -64 Score: 4.3 Sequence: TTGAAACCGATACCAA Locus tag: BPUM_3246 Name: kduI Funciton: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17) Locus tag: BPUM_3247 Name: kduD Funciton: 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125)
	BPUM_3246	kduI	4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17)
	BPUM_3247	kduD	2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125)
Position: -72 Score: 4.8 Sequence: TTGAAATCGCTATCAT Locus tag: BPUM_0419 Name: dctA Funciton: C4-dicarboxylate transport protein
	BPUM_0419	dctA	C4-dicarboxylate transport protein
Position: -100 Score: 4.9 Sequence: TTGTAAGCGCTATAAT Locus tag: BPUM_3415 Name: pta Funciton: Phosphate acetyltransferase (EC 2.3.1.8)
	BPUM_3415	pta	Phosphate acetyltransferase (EC 2.3.1.8)
Position: -320 Score: 4.6 Sequence: AAGAAAGCGTTGACAT Locus tag: BPUM_3566 Name: bglP Funciton: PTS system, aryl-phospho-beta-glucoside-specific component IIABC (EC 2.7.1.69) Locus tag: BPUM_3565 Name: bglH Funciton: Aryl-phospho-beta-D-glucosidase (EC 3.2.1.86)
	BPUM_3566	bglP	PTS system, aryl-phospho-beta-glucoside-specific component IIABC (EC 2.7.1.69)
	BPUM_3565	bglH	Aryl-phospho-beta-D-glucosidase (EC 3.2.1.86)
Position: -145 Score: 5.1 Sequence: ATGAAAGCGTAATCAA Locus tag: BPUM_3452 Name: sacP Funciton: PTS sucrose-specific enzyme IIBC component Locus tag: BPUM_3451 Name: sacA Funciton: Sucrose-6-phosphate hydrolase (EC 3.2.1.26)
	BPUM_3452	sacP	PTS sucrose-specific enzyme IIBC component
	BPUM_3451	sacA	Sucrose-6-phosphate hydrolase (EC 3.2.1.26)
Position: -32 Score: 4.5 Sequence: TTGAAACCGGTACCAA Locus tag: BPUM_3244 Name: kdgK Funciton: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) Locus tag: BPUM_3243 Name: kdgA Funciton: 4-Hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) / 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
	BPUM_3244	kdgK	2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)
	BPUM_3243	kdgA	4-Hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) / 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
Position: -53 Score: 4.2 Sequence: TTGAAATCGGTTTCGA Locus tag: BPUM_3245 Name: kdgR Funciton: Transcriptional regulator of pectin utilization, LacI family
	BPUM_3245	kdgR	Transcriptional regulator of pectin utilization, LacI family
Position: -166 Score: 4.8 Sequence: TTGAAGGCGTTTTCAT Locus tag: BPUM_1404 Name: apbA Funciton: 2-dehydropantoate 2-reductase (EC 1.1.1.169) Locus tag: BPUM_1405 Name: yllA Funciton: Hypothetical membrane spanning protein
	BPUM_1404	apbA	2-dehydropantoate 2-reductase (EC 1.1.1.169)
	BPUM_1405	yllA	Hypothetical membrane spanning protein
Position: -104 Score: 4.9 Sequence: AAGAAAGCGTTATCAA Locus tag: BPUM_0182 Name: glpT Funciton: MFS family major facilitator transporter, glycerol-3-phosphate:cation symporter Locus tag: BPUM_0181 Name: glpQ Funciton: Glycerophosphoryl diester phosphodiesterase, periplasmic (EC 3.1.4.46)
	BPUM_0182	glpT	MFS family major facilitator transporter, glycerol-3-phosphate:cation symporter
	BPUM_0181	glpQ	Glycerophosphoryl diester phosphodiesterase, periplasmic (EC 3.1.4.46)
Position: 318 Score: 4 Sequence: GTGAAAACGCTTGCGG Locus tag: BPUM_0728 Name: treP Funciton: PTS system, trehalose-specific enzyme II, BC component (EC 2.7.1.69) Locus tag: BPUM_0729 Name: treA Funciton: Trehalose-6-phosphate hydrolase (EC 3.2.1.93) Locus tag: BPUM_0730 Name: treR Funciton: Transcriptional repressor of trehalose operon, GntR family
	BPUM_0728	treP	PTS system, trehalose-specific enzyme II, BC component (EC 2.7.1.69)
	BPUM_0729	treA	Trehalose-6-phosphate hydrolase (EC 3.2.1.93)
	BPUM_0730	treR	Transcriptional repressor of trehalose operon, GntR family
Position: 0 Score: 4.6 Sequence: ATGAATGCGGTTACAA Locus tag: BPUM_2525 Name: cstA Funciton: Carbon starvation-induced membrane protein
	BPUM_2525	cstA	Carbon starvation-induced membrane protein
Position: -101 Score: 4.7 Sequence: TTGGAAGCGTTTTATT Locus tag: BPUM_1862 Name: odhA Funciton: 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2) Locus tag: BPUM_1861 Name: odhB Funciton: 2-oxoglutarate dehydrogenase E2 component
	BPUM_1862	odhA	2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)
	BPUM_1861	odhB	2-oxoglutarate dehydrogenase E2 component
Position: 247 Score: 4.4 Sequence: TTGAAATCGCTTACGT Locus tag: BPUM_3468 Name: galK Funciton: Galactokinase (EC 2.7.1.6) Locus tag: BPUM_3467 Name: galE Funciton: UDP-glucose 4-epimerase (EC 5.1.3.2) Locus tag: BPUM_3466 Name: galT Funciton: Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10)
	BPUM_3468	galK	Galactokinase (EC 2.7.1.6)
	BPUM_3467	galE	UDP-glucose 4-epimerase (EC 5.1.3.2)
	BPUM_3466	galT	Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10)
Position: -116 Score: 4.5 Sequence: ATGAAAGCGTTAAACT Locus tag: BPUM_1387 Name: ylbB Funciton: CBS domain protein Locus tag: BPUM_1388 Name: ylbC Funciton: Uncharacterized secreted protein with SCP domain
	BPUM_1387	ylbB	CBS domain protein
	BPUM_1388	ylbC	Uncharacterized secreted protein with SCP domain
Position: -37 Score: 4.2 Sequence: CTGGAAGCGCTTTTAT Locus tag: BPUM_2121 Name: gmuB Funciton: PTS system, cellobiose-specific IIB component (EC 2.7.1.69) Locus tag: BPUM_2120 Name: gmuA Funciton: PTS system, cellobiose-specific IIA component (EC 2.7.1.69) Locus tag: BPUM_2119 Name: gmuC Funciton: PTS system, cellobiose-specific IIC component (EC 2.7.1.69) Locus tag: BPUM_2118 Name: gmuD Funciton: Beta-glucosidase (EC 3.2.1.21) Locus tag: BPUM_2117 Name: gmuR Funciton: Transcriptional regulator of glucomannan utilization, GntR family
	BPUM_2121	gmuB	PTS system, cellobiose-specific IIB component (EC 2.7.1.69)
	BPUM_2120	gmuA	PTS system, cellobiose-specific IIA component (EC 2.7.1.69)
	BPUM_2119	gmuC	PTS system, cellobiose-specific IIC component (EC 2.7.1.69)
	BPUM_2118	gmuD	Beta-glucosidase (EC 3.2.1.21)
	BPUM_2117	gmuR	Transcriptional regulator of glucomannan utilization, GntR family
Position: -37 Score: 4.9 Sequence: TTGATAACGCTTACAA Locus tag: BPUM_3238 Name: BPUM_3238 Funciton: Predicted beta-glucoside-regulated ABC transport system, sugar-binding protein Locus tag: BPUM_3237 Name: BPUM_3237 Funciton: Predicted beta-glucoside-regulated ABC transport system, permease component 1 Locus tag: BPUM_3236 Name: BPUM_3236 Funciton: Predicted beta-glucoside-regulated ABC transport system, permease component 2 Locus tag: BPUM_3235 Name: pmi Funciton: Mannose-6-phosphate isomerase (EC 5.3.1.8)
	BPUM_3238	BPUM_3238	Predicted beta-glucoside-regulated ABC transport system, sugar-binding protein
	BPUM_3237	BPUM_3237	Predicted beta-glucoside-regulated ABC transport system, permease component 1
	BPUM_3236	BPUM_3236	Predicted beta-glucoside-regulated ABC transport system, permease component 2
	BPUM_3235	pmi	Mannose-6-phosphate isomerase (EC 5.3.1.8)
Position: -78 Score: 4.4 Sequence: TTGAAAGCGCTTTACC Locus tag: BPUM_1754 Name: msmR Funciton: Transcriptional regulator of alpha-galactoside utilization, LacI family Locus tag: BPUM_1753 Name: msmE Funciton: Multiple sugar ABC transporter, substrate-binding protein Locus tag: BPUM_1752 Name: msmF Funciton: Multiple sugar ABC transporter, membrane-spanning permease protein MsmF Locus tag: BPUM_1751 Name: msmG Funciton: Multiple sugar ABC transporter, membrane-spanning permease protein MsmG Locus tag: BPUM_1750 Name: melA Funciton: Alpha-galactosidase (EC 3.2.1.22)
	BPUM_1754	msmR	Transcriptional regulator of alpha-galactoside utilization, LacI family
	BPUM_1753	msmE	Multiple sugar ABC transporter, substrate-binding protein
	BPUM_1752	msmF	Multiple sugar ABC transporter, membrane-spanning permease protein MsmF
	BPUM_1751	msmG	Multiple sugar ABC transporter, membrane-spanning permease protein MsmG
	BPUM_1750	melA	Alpha-galactosidase (EC 3.2.1.22)

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of CcpA in Bacillus pumilus SAFR-032

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --