Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of CcpA in Bacillus licheniformis DSM 13

Properties
Regulator type: Transcription factor
TF locus tag: BLi03125
Regulator family: LacI
Regulation mode:
Biological process: Carbon catabolism
Effector: HPr, phosphocarrier protein
Regulog: CcpA - Bacillales
Statistics of regulated genes:
- Genes 193
- Operons 85
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 559 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: 1303
Score: 4.5
Sequence: TTGATAACGCTTTCGA
Locus tag: BLi00225
Name: citS
Funciton: Two-component sensor kinase
Locus tag: BLi00224
Name: citT
Funciton: Transcriptional regulatory protein
citS
Two-component sensor kinase
citT
Transcriptional regulatory protein

Position: -71
Score: 4.8
Sequence: ATGAAAATGTTTACAT
Locus tag: BLi02652
Name: yqgY
Funciton: Uncharacterized short membrane protein
yqgY
Uncharacterized short membrane protein

Position: -66
Score: 4.8
Sequence: ATGAAAACGGTTAAAA
Locus tag: BLi02654
Name: yqgW
Funciton: Alkaliphily related protein
yqgW
Alkaliphily related protein

Position: -51
Score: 5.1
Sequence: TTGAAAGCGCTTTTAT
Locus tag: BLi00853
Name: acoR
Funciton: Transcriptional activator of acetoin dehydrogenase operon AcoR
acoR
Transcriptional activator of acetoin dehydrogenase operon AcoR

Position: -68
Score: 4.8
Sequence: TTGAAAACGCTTTTTT
Locus tag: BLi03037
Name: lrgA
Funciton: Antiholin-like protein LrgA
Locus tag: BLi03036
Name: lrgB
Funciton: LrgA-associated membrane protein LrgB
lrgA
Antiholin-like protein LrgA
lrgB
LrgA-associated membrane protein LrgB

Position: -62
Score: 4.3
Sequence: ATGATTGCGCTTACAA
Locus tag: BLi03019
Name: cstA
Funciton: Carbon starvation-induced membrane protein
cstA
Carbon starvation-induced membrane protein

Position: -99
Score: 4.1
Sequence: GTGTAAACGGTTTATA
Locus tag: BLi02500
Name: drm
Funciton: Phosphopentomutase (EC 5.4.2.7)
Locus tag: BLi02499
Name: punA
Funciton: Purine nucleoside phosphorylase (EC 2.4.2.1)
drm
Phosphopentomutase (EC 5.4.2.7)
punA
Purine nucleoside phosphorylase (EC 2.4.2.1)

Position: -96
Score: 4.2
Sequence: TTGACAGCGTTTTATG
Locus tag: BLi00508
Name: mtlR
Funciton: Mannitol operon activator, BglG family
mtlR
Mannitol operon activator, BglG family

Position: -34
Score: 4.6
Sequence: ATGTAAGCGAATACAT
Locus tag: BLi04228
Name: nupC
Funciton: Nucleoside permease NupC
Locus tag: BLi04227
Name: pdp
Funciton: Pyrimidine-nucleoside phosphorylase (EC 2.4.2.2)
nupC
Nucleoside permease NupC
pdp
Pyrimidine-nucleoside phosphorylase (EC 2.4.2.2)

Position: -94
Score: 4.4
Sequence: CTGTAAGCGTTTTAAT
Locus tag: BLi00505
Name: mtlA
Funciton: PTS family mannitol-permease II, BC component
Locus tag: BLi00506
Name: mtlF
Funciton: PTS mannitol-specific enzyme IIA component
Locus tag: BLi00507
Name: mtlD
Funciton: Mannitol-1-phosphate 5-dehydrogenase (EC 1.1.1.17)
mtlA
PTS family mannitol-permease II, BC component
mtlF
PTS mannitol-specific enzyme IIA component
mtlD
Mannitol-1-phosphate 5-dehydrogenase (EC 1.1.1.17)

Position: -41
Score: 4.9
Sequence: TTGTAAGCGCTTTATA
Locus tag: BLi00488
Name: sdcS
Funciton: Sodium:dicarboxylate cotransporter; di- and tricarboxylate transporters
sdcS
Sodium:dicarboxylate cotransporter; di- and tricarboxylate transporters

Position: -109
Score: 4.5
Sequence: TTGAAAGCGATTAATT
Locus tag: BLi04048
Name: xylA
Funciton: Xylose isomerase (EC 5.3.1.5)
Locus tag: BLi04047
Name: xylB
Funciton: Xylulose kinase (EC 2.7.1.17)
xylA
Xylose isomerase (EC 5.3.1.5)
xylB
Xylulose kinase (EC 2.7.1.17)

Position: -122
Score: 4.9
Sequence: TTGAAAGCGCAGTCAT
Locus tag: BLi04090
Name: licR
Funciton: Transcriptional antiterminator of lichenan operon, BglG family
licR
Transcriptional antiterminator of lichenan operon, BglG family

Position: -34
Score: 4.8
Sequence: GTGAAAGCGCTTTTAA
Locus tag: BLi02564
Name: gmuB
Funciton: PTS system, cellobiose-specific IIB component (EC 2.7.1.69)
Locus tag: BLi02563
Name: gmuA
Funciton: PTS system, cellobiose-specific IIA component (EC 2.7.1.69)
Locus tag: BLi02562
Name: gmuC
Funciton: PTS system, cellobiose-specific IIC component (EC 2.7.1.69)
Locus tag: BLi02561
Name: gmuC
Funciton: PTS system, cellobiose-specific IIC component (EC 2.7.1.69)
Locus tag: BLi02560
Name: gmuD
Funciton: Beta-glucosidase (EC 3.2.1.21)
Locus tag: BLi02559
Name: gmuR
Funciton: Transcriptional regulator of glucomannan utilization, GntR family
gmuB
PTS system, cellobiose-specific IIB component (EC 2.7.1.69)
gmuA
PTS system, cellobiose-specific IIA component (EC 2.7.1.69)
gmuC
PTS system, cellobiose-specific IIC component (EC 2.7.1.69)
gmuC
PTS system, cellobiose-specific IIC component (EC 2.7.1.69)
gmuD
Beta-glucosidase (EC 3.2.1.21)
gmuR
Transcriptional regulator of glucomannan utilization, GntR family

Position: -72
Score: 4.8
Sequence: TTGAAAGCGTTTTTAG
Locus tag: BLi00447
Name: ganA
Funciton: Beta-galactosidase (EC 3.2.1.23)
ganA
Beta-galactosidase (EC 3.2.1.23)

Position: -69
Score: 4.9
Sequence: ATGAAAACGCTTAATA
Locus tag: BLi03120
Name: acuA
Funciton: Acetyltransferase AcuA, acetyl-CoA synthetase inhibitor
Locus tag: BLi03121
Name: acuB
Funciton: Component of the acetoin degradation regulation pathway
Locus tag: BLi03122
Name: acuC
Funciton: Acetoin dehydrogenase
acuA
Acetyltransferase AcuA, acetyl-CoA synthetase inhibitor
acuB
Component of the acetoin degradation regulation pathway
acuC
Acetoin dehydrogenase

Position: -128
Score: 4.8
Sequence: ATGTAAGCGCTTCAAA
Locus tag: BLi00442
Name: araF
Funciton: L-arabinose-binding periplasmic protein precursor AraF (TC 3.A.1.2.2)
Locus tag: BLi00443
Name: araG
Funciton: L-arabinose transport ATP-binding protein AraG (TC 3.A.1.2.2)
Locus tag: BLi00444
Name: araH
Funciton: L-arabinose transport system permease protein (TC 3.A.1.2.2)
araF
L-arabinose-binding periplasmic protein precursor AraF (TC 3.A.1.2.2)
araG
L-arabinose transport ATP-binding protein AraG (TC 3.A.1.2.2)
araH
L-arabinose transport system permease protein (TC 3.A.1.2.2)

Position: -118
Score: 4.6
Sequence: ATGTAAGCGGATACTA
Locus tag: BLi02116
Name: uxuA
Funciton: Mannonate dehydratase (EC 4.2.1.8)
Locus tag: BLi02115
Name: fabG
Funciton: D-mannonate oxidoreductase (EC 1.1.1.57)
uxuA
Mannonate dehydratase (EC 4.2.1.8)
fabG
D-mannonate oxidoreductase (EC 1.1.1.57)

Position: -32
Score: 4.9
Sequence: TTGAAAACGCTTTATA
Locus tag: BLi03702
Name: dapA
Funciton: Dihydrodipicolinate synthase family
Locus tag: BLi03701
Name: eutG
Funciton: Alcohol dehydrogenase (EC 1.1.1.1)
Locus tag: BLi03700
Name: hop
Funciton: Candidate type III effector Hop protein
Locus tag: BLi03699
Name: pdxA
Funciton: 4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262)
dapA
Dihydrodipicolinate synthase family
eutG
Alcohol dehydrogenase (EC 1.1.1.1)
hop
Candidate type III effector Hop protein
pdxA
4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262)

Position: -81
Score: 4.9
Sequence: ATGAAAACGCTTAATA
Locus tag: BLi02831
Name: levD
Funciton: PTS-system fructose-specific enzyme IIA component (EC 2.7.1.69)
Locus tag: BLi02830
Name: levE
Funciton: PTS-system fructose-specific enzyme IIB component (EC 2.7.1.69)
Locus tag: BLi02829
Name: levF
Funciton: PTS-system fructose-specific enzyme IIC component (EC 2.7.1.69)
Locus tag: BLi02828
Name: levG
Funciton: PTS system, mannose/fructose-specific IID component (EC 2.7.1.69)
Locus tag: BLi02827
Name: sacC
Funciton: Levanase (EC 3.2.1.65)
levD
PTS-system fructose-specific enzyme IIA component (EC 2.7.1.69)
levE
PTS-system fructose-specific enzyme IIB component (EC 2.7.1.69)
levF
PTS-system fructose-specific enzyme IIC component (EC 2.7.1.69)
levG
PTS system, mannose/fructose-specific IID component (EC 2.7.1.69)
sacC
Levanase (EC 3.2.1.65)

Position: -48
Score: 4.5
Sequence: AAAAAAGCGTTTACAA
Locus tag: BLi01727
Name: ylbP
Funciton: Uncharacterized N-acetyltransferase (EC 2.3.1.-)
ylbP
Uncharacterized N-acetyltransferase (EC 2.3.1.-)

Position: -59
Score: 4.7
Sequence: TTGTAAGGGTTTTCAT
Locus tag: BLi01493
Name: ykoM
Funciton: Putative transcriptional regulator, MarR family
ykoM
Putative transcriptional regulator, MarR family

Position: -53
Score: 4.8
Sequence: ATGAAAGCGCAGTCTA
Locus tag: BLi01829
Name: sucC
Funciton: Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)
Locus tag: BLi01830
Name: sucD
Funciton: Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5)
sucC
Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)
sucD
Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5)

Position: -297
Score: 5.2
Sequence: ATGAAAGCGTTGACAA
Locus tag: BLi04200
Name: bglP1
Funciton: PTS system, beta-glucoside-specific enzyme II, ABC component
Locus tag: BLi04199
Name: bglB
Funciton: Beta-glucosidase (EC 3.2.1.21); 6-phospho-beta-glucosidase (EC 3.2.1.86)
bglP1
PTS system, beta-glucoside-specific enzyme II, ABC component
bglB
Beta-glucosidase (EC 3.2.1.21); 6-phospho-beta-glucosidase (EC 3.2.1.86)

Position: -37
Score: 4.5
Sequence: GAGTAAGCGTTTACAA
Position: -30
Score: 4.8
Sequence: ATGTAAGCACTTACAA
Locus tag: BLi01368
Name: rhiL
Funciton: Putatuve rhamnogalacturonides ABC transporter, substrate-binding protein
Locus tag: BLi01369
Name: rhiF
Funciton: Putatuve rhamnogalacturonides ABC transporter, permease component 1
Locus tag: BLi01370
Name: rhiG
Funciton: Putatuve rhamnogalacturonides ABC transporter, permease component 2
Locus tag: BLi01371
Name: rhiN1
Funciton: Rhamnogalacturonyl hydrolase (EC 3.2.1.172)
Locus tag: BLi01372
Name: rhgR
Funciton: Transcriptional regulator of rhamnogalacturonan utilization, AraC family
Locus tag: BLi01373
Name: yesT
Funciton: Rhamnogalacturonan acetylesterase
Locus tag: BLi01374
Name: yesU
Funciton: Hypothetical protein
Locus tag: BLi01375
Name: yesV
Funciton: Putative integral inner membrane component
Locus tag: BLi01376
Name: yesW
Funciton: Predicted rhamnogalacturonan lyase in rhamnose utilization cluster
Locus tag: BLi01377
Name: BLi01377
Funciton: Hypothetical protein
Locus tag: BLi01378
Name: yesT
Funciton: Rhamnogalacturonan acetylesterase
Locus tag: BLi01379
Name: yesX
Funciton: Predicted rhamnogalacturonan lyase in rhamnose utilization cluster
Locus tag: BLi01380
Name: yghZ
Funciton: Putative ion-channel protein
Locus tag: BLi01381
Name: yesY
Funciton: Possible rhamnogalacturan acetylesterase
Locus tag: BLi01382
Name: yesZ
Funciton: Beta-galactosidase (EC 3.2.1.23)
rhiL
Putatuve rhamnogalacturonides ABC transporter, substrate-binding protein
rhiF
Putatuve rhamnogalacturonides ABC transporter, permease component 1
rhiG
Putatuve rhamnogalacturonides ABC transporter, permease component 2
rhiN1
Rhamnogalacturonyl hydrolase (EC 3.2.1.172)
rhgR
Transcriptional regulator of rhamnogalacturonan utilization, AraC family
yesT
Rhamnogalacturonan acetylesterase
yesU
Hypothetical protein
yesV
Putative integral inner membrane component
yesW
Predicted rhamnogalacturonan lyase in rhamnose utilization cluster
BLi01377
Hypothetical protein
yesT
Rhamnogalacturonan acetylesterase
yesX
Predicted rhamnogalacturonan lyase in rhamnose utilization cluster
yghZ
Putative ion-channel protein
yesY
Possible rhamnogalacturan acetylesterase
yesZ
Beta-galactosidase (EC 3.2.1.23)

Position: -34
Score: 4.6
Sequence: GTTAAAGCGCTTACAT
Locus tag: BLi01052
Name: msmX
Funciton: Maltose/maltodextrin transport ATP-binding protein (EC 3.6.3.19)
msmX
Maltose/maltodextrin transport ATP-binding protein (EC 3.6.3.19)

Position: -105
Score: 4.4
Sequence: TTTTAACCGTTTTCAT
Locus tag: BLi02653
Name: yqgX
Funciton: Similar to Hydroxyacylglutathione hydrolase, but in an organism lacking glutathione biosynthesis
yqgX
Similar to Hydroxyacylglutathione hydrolase, but in an organism lacking glutathione biosynthesis

Position: -57
Score: 5.3
Sequence: ATGAAAGCGTTTTCTT
Locus tag: BLi04276
Name: ganB
Funciton: Arabinogalactan endo-1,4-beta-galactosidase precursor (EC 3.2.1.89)
ganB
Arabinogalactan endo-1,4-beta-galactosidase precursor (EC 3.2.1.89)

Position: -208
Score: 4.9
Sequence: TTGAAAACGCTTATAT
Locus tag: BLi00274
Name: glsA1
Funciton: Glutaminase (EC 3.5.1.2)
glsA1
Glutaminase (EC 3.5.1.2)

Position: -94
Score: 4.5
Sequence: AAGACAGCGCTTACAT
Locus tag: BLi03029
Name: abnA
Funciton: Arabinan endo-1,5-alpha-L-arabinosidase (EC 3.2.1.99)
abnA
Arabinan endo-1,5-alpha-L-arabinosidase (EC 3.2.1.99)

Position: -33
Score: 5.1
Sequence: ATGAAAGCGATTACAA
Locus tag: BLi01241
Name: tctC
Funciton: Tricarboxylate transport protein TctC
Locus tag: BLi01242
Name: tctB
Funciton: Tricarboxylate transport protein TctB
Locus tag: BLi01243
Name: tctA
Funciton: Tricarboxylate transport membrane protein TctA
tctC
Tricarboxylate transport protein TctC
tctB
Tricarboxylate transport protein TctB
tctA
Tricarboxylate transport membrane protein TctA

Position: -178
Score: 5.2
Sequence: TTGAAAGCGTTTAAAA
Position: -93
Score: 5.1
Sequence: TTGAAAGCGCTTTTAT
Locus tag: BLi02065
Name: araE
Funciton: Arabinose-proton symporter
araE
Arabinose-proton symporter

Position: -225
Score: 5
Sequence: ATGTAAGCGTATACAA
Locus tag: BLi02962
Name: dat
Funciton: Branched-chain amino acid aminotransferase (EC 2.6.1.42)
dat
Branched-chain amino acid aminotransferase (EC 2.6.1.42)

Position: -107
Score: 4.9
Sequence: ATGTAAGCGATTACAT
Position: -33
Score: 5.1
Sequence: ATGAAAGCGTTATCTT
Locus tag: BLi04274
Name: dagA
Funciton: Putative amino acid transporter
dagA
Putative amino acid transporter

Position: -178
Score: 5
Sequence: TTGAAAACGATTTCAA
Locus tag: BLi02332
Name: cspD
Funciton: Cold-shock protein, molecular chaperone, RNA-helicase co-factor
cspD
Cold-shock protein, molecular chaperone, RNA-helicase co-factor

Position: -27
Score: 4.5
Sequence: TTGTAAACGTATTCAC
Locus tag: BLi01062
Name: yhaR
Funciton: Enoyl-CoA hydratase (EC 4.2.1.17)
yhaR
Enoyl-CoA hydratase (EC 4.2.1.17)

Position: -89
Score: 4.5
Sequence: ATGTAAACGGTTACGT
Locus tag: BLi02111
Name: manR
Funciton: Transcriptional regulator of mannose utilization, BglG family
manR
Transcriptional regulator of mannose utilization, BglG family

Position: -41
Score: 4.7
Sequence: TTGTAAACGCTGTCTT
Locus tag: BLi00439
Name: rbsB
Funciton: ABC-type sugar transport system, periplasmic component
Locus tag: BLi00440
Name: BH3447
Funciton: Two-component sensor histidine kinase
Locus tag: BLi00441
Name: BH3446
Funciton: DNA-binding response regulator, AraC family
rbsB
ABC-type sugar transport system, periplasmic component
BH3447
Two-component sensor histidine kinase
BH3446
DNA-binding response regulator, AraC family

Position: -31
Score: 4.5
Sequence: TTGTAAACGAATACAA
Locus tag: BLi00172
Name: mrp
Funciton: Scaffold protein for [4Fe-4S] cluster assembly ApbC, MRP-like
mrp
Scaffold protein for [4Fe-4S] cluster assembly ApbC, MRP-like

Position: 411
Score: 5.4
Sequence: ATGAAAGCGCTAACAA
Locus tag: BLi03003
Name: lcfA
Funciton: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
lcfA
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)

Position: -200
Score: 5.5
Sequence: ATGAAAGCGTTTACAA
Locus tag: BLi00730
Name: gatC
Funciton: Aspartyl (EC 6.3.5.6)/Glutamyl (EC 6.3.5.7) -tRNA amidotransferase subunit C
Locus tag: BLi00731
Name: gatA
Funciton: Aspartyl (EC 6.3.5.6)/Glutamyl (EC 6.3.5.7) -tRNA amidotransferase subunit A
Locus tag: BLi00732
Name: gatB
Funciton: Aspartyl (EC 6.3.5.6)/Glutamyl (EC 6.3.5.7) -tRNA amidotransferase subunit B
gatC
Aspartyl (EC 6.3.5.6)/Glutamyl (EC 6.3.5.7) -tRNA amidotransferase subunit C
gatA
Aspartyl (EC 6.3.5.6)/Glutamyl (EC 6.3.5.7) -tRNA amidotransferase subunit A
gatB
Aspartyl (EC 6.3.5.6)/Glutamyl (EC 6.3.5.7) -tRNA amidotransferase subunit B

Position: 250
Score: 4.4
Sequence: TTAAAAGCGCTTTGAA
Locus tag: BLi03678
Name: sigL
Funciton: DNA-directed RNA polymerase sigma subunit SigL
sigL
DNA-directed RNA polymerase sigma subunit SigL

Position: -313
Score: 4.9
Sequence: ATGAAAGCGCTATTAT
Position: -186
Score: 4.7
Sequence: TTGTAACCGTATTCAA
Locus tag: BLi02710
Name: cccA
Funciton: Membrane-attached cytochrome c550
cccA
Membrane-attached cytochrome c550

Position: -168
Score: 4.9
Sequence: GTGAAAGCGTTAACAT
Locus tag: BLi03086
Name: ackA
Funciton: Acetate kinase (EC 2.7.2.1)
ackA
Acetate kinase (EC 2.7.2.1)

Position: 415
Score: 4.9
Sequence: ATGTAAGCGTTTGCTT
Locus tag: BLi00849
Name: acoA
Funciton: Acetoin dehydrogenase E1 component alpha-subunit (EC 1.2.4.-)
acoA
Acetoin dehydrogenase E1 component alpha-subunit (EC 1.2.4.-)

Position: 6
Score: 4.7
Sequence: TTGAAAGCGCTGCCAG
Locus tag: BLi03119
Name: acsA
Funciton: Acetyl-coenzyme A synthetase (EC 6.2.1.1)
acsA
Acetyl-coenzyme A synthetase (EC 6.2.1.1)

Position: -221
Score: 4.5
Sequence: ATGTAAACGTATTTAA
Locus tag: BLi02131
Name: Aflv_2794
Funciton: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)
Aflv_2794
Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)

Position: -35
Score: 5.3
Sequence: ATGAAAACGCTTTCTA
Locus tag: BLi02144
Name: yngI
Funciton: Long-chain fatty-acid-CoA ligase (EC 6.2.1.3)
Locus tag: BLi02143
Name: yngH
Funciton: Biotin carboxylase of methylcrotonyl-CoA carboxylase (EC 6.3.4.14)
Locus tag: BLi02142
Name: yngHB
Funciton: Biotin carboxyl carrier protein of methylcrotonyl-CoA carboxylase ( EC:6.4.1.2 )
Locus tag: BLi02141
Name: yngG
Funciton: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
Locus tag: BLi02140
Name: yngF
Funciton: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
Locus tag: BLi02139
Name: yngE
Funciton: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
Locus tag: BLi02138
Name: acsA2
Funciton: Acetoacetyl-CoA synthetase [leucine] (EC 6.2.1.16)
yngI
Long-chain fatty-acid-CoA ligase (EC 6.2.1.3)
yngH
Biotin carboxylase of methylcrotonyl-CoA carboxylase (EC 6.3.4.14)
yngHB
Biotin carboxyl carrier protein of methylcrotonyl-CoA carboxylase ( EC:6.4.1.2 )
yngG
Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
yngF
Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
yngE
Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
acsA2
Acetoacetyl-CoA synthetase [leucine] (EC 6.2.1.16)

Position: -29
Score: 4.8
Sequence: TTGTAAACGCTTATAA
Locus tag: BLi00855
Name: glvA
Funciton: Maltose-6'-phosphate glucosidase (EC 3.2.1.122)
Locus tag: BLi00856
Name: glvR
Funciton: Transcriptional activator of maltose utilization, RpiR family
Locus tag: BLi00857
Name: glvC
Funciton: PTS system, maltose and glucose-specific IIC component (EC 2.7.1.69) / PTS system, maltose and glucose-specific IIB component (EC 2.7.1.69)
glvA
Maltose-6'-phosphate glucosidase (EC 3.2.1.122)
glvR
Transcriptional activator of maltose utilization, RpiR family
glvC
PTS system, maltose and glucose-specific IIC component (EC 2.7.1.69) / PTS system, maltose and glucose-specific IIB component (EC 2.7.1.69)

Position: -74
Score: 5.2
Sequence: ATGAAAACGGTTTCAT
Locus tag: BLi04089
Name: licB
Funciton: PTS system, lichenan-specific IIB component (EC 2.7.1.69); PTS system, cellobiose-specific IIB component (EC 2.7.1.69)
Locus tag: BLi04088
Name: licC
Funciton: PTS system, lichenan-specific IIC component (EC 2.7.1.69)
Locus tag: BLi04087
Name: licA
Funciton: PTS system, lichenan-specific IIA component (EC 2.7.1.69)
Locus tag: BLi04086
Name: licH
Funciton: 6-phospho-beta-glucosidase (EC 3.2.1.86)
licB
PTS system, lichenan-specific IIB component (EC 2.7.1.69); PTS system, cellobiose-specific IIB component (EC 2.7.1.69)
licC
PTS system, lichenan-specific IIC component (EC 2.7.1.69)
licA
PTS system, lichenan-specific IIA component (EC 2.7.1.69)
licH
6-phospho-beta-glucosidase (EC 3.2.1.86)

Position: -29
Score: 4.6
Sequence: ATGAAGGCGTTTCCAA
Locus tag: BLi01652
Name: fruR
Funciton: Transcriptional regulator of fructose utilization, DeoR family
Locus tag: BLi01653
Name: fruK
Funciton: Tagatose-6-phosphate kinase (EC 2.7.1.144) / 1-phosphofructokinase (EC 2.7.1.56)
Locus tag: BLi01654
Name: fruA
Funciton: PTS system fructose-specific enzyme II, ABC subunits (EC 2.7.1.69)
fruR
Transcriptional regulator of fructose utilization, DeoR family
fruK
Tagatose-6-phosphate kinase (EC 2.7.1.144) / 1-phosphofructokinase (EC 2.7.1.56)
fruA
PTS system fructose-specific enzyme II, ABC subunits (EC 2.7.1.69)

Position: -143
Score: 4.4
Sequence: ATGTACGCGTTTTCTT
Locus tag: BLi02994
Name: sdhC
Funciton: Succinate dehydrogenase cytochrome b558 subunit
Locus tag: BLi02993
Name: sdhA
Funciton: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Locus tag: BLi02992
Name: sdhB
Funciton: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
Locus tag: BLi02991
Name: ysmA
Funciton: 4-hydroxybenzoyl-CoA thioesterase, putative
sdhC
Succinate dehydrogenase cytochrome b558 subunit
sdhA
Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
sdhB
Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
ysmA
4-hydroxybenzoyl-CoA thioesterase, putative

Position: -69
Score: 4.3
Sequence: GTGAAAACGTTTATTT
Locus tag: BLi03059
Name: phoP
Funciton: Alkaline phosphatase synthesis transcriptional regulatory protein PhoP
Locus tag: BLi03058
Name: phoR
Funciton: Phosphate regulon sensor protein PhoR (SphS) (EC 2.7.13.3)
phoP
Alkaline phosphatase synthesis transcriptional regulatory protein PhoP
phoR
Phosphate regulon sensor protein PhoR (SphS) (EC 2.7.13.3)

Position: -196
Score: 4.3
Sequence: GTGTAAACGTTTTATT
Position: -132
Score: 4.8
Sequence: TTGTAAGCGTTTAATT
Locus tag: BLi04251
Name: iolA
Funciton: Methylmalonate-semialdehyde dehydrogenase [inositol] (EC 1.2.1.27)
Locus tag: BLi04250
Name: iolB
Funciton: 5-deoxy-glucuronate isomerase (EC 5.3.1.-)
iolA
Methylmalonate-semialdehyde dehydrogenase [inositol] (EC 1.2.1.27)
iolB
5-deoxy-glucuronate isomerase (EC 5.3.1.-)

Position: -176
Score: 4.7
Sequence: ATGGAAACGTTGTCAT
Locus tag: BLi04249
Name: iolC
Funciton: 5-keto-2-deoxygluconokinase (EC 2.7.1.92)
Locus tag: BLi04248
Name: iolD
Funciton: Epi-inositol hydrolase (EC 3.7.1.-)
Locus tag: BLi04247
Name: iolE
Funciton: Inosose dehydratase (EC 4.2.1.44)
Locus tag: BLi04246
Name: iolF
Funciton: Minor myo-inositol transporter
Locus tag: BLi04245
Name: iolG
Funciton: Myo-inositol 2-dehydrogenase 1 (EC 1.1.1.18)
Locus tag: BLi04244
Name: iolH
Funciton: Xylose isomerase (EC 5.3.1.5)
Locus tag: BLi04243
Name: iolI
Funciton: Inosose isomerase (EC 5.3.99.-)
Locus tag: BLi04242
Name: iolJ
Funciton: Fructose-bisphosphate aldolase class II (EC 4.1.2.13)
iolC
5-keto-2-deoxygluconokinase (EC 2.7.1.92)
iolD
Epi-inositol hydrolase (EC 3.7.1.-)
iolE
Inosose dehydratase (EC 4.2.1.44)
iolF
Minor myo-inositol transporter
iolG
Myo-inositol 2-dehydrogenase 1 (EC 1.1.1.18)
iolH
Xylose isomerase (EC 5.3.1.5)
iolI
Inosose isomerase (EC 5.3.99.-)
iolJ
Fructose-bisphosphate aldolase class II (EC 4.1.2.13)

Position: -108
Score: 4.9
Sequence: ATGATAACGCTTACAA
Locus tag: BLi00639
Name: iolF
Funciton: Minor myo-inositol transporter
iolF
Minor myo-inositol transporter

Position: -33
Score: 4.9
Sequence: ATGTAAGCGGATTCAT
Locus tag: BLi00221
Name: citM
Funciton: Mg(2+) Citrate transporter (TC 2.A.11.1.1)
citM
Mg(2+) Citrate transporter (TC 2.A.11.1.1)

Position: -39
Score: 4.5
Sequence: TTGAAAGCCTATACAT
Locus tag: BLi02408
Name: ndk
Funciton: Nucleoside diphosphate kinase (EC 2.7.4.6)
ndk
Nucleoside diphosphate kinase (EC 2.7.4.6)

Position: -30
Score: 5.2
Sequence: ATGAAAGCGTTTTAAA
Locus tag: BLi04220
Name: abnB
Funciton: Alpha-N-arabinofuranosidase 2 (EC 3.2.1.55)
abnB
Alpha-N-arabinofuranosidase 2 (EC 3.2.1.55)

Position: -81
Score: 4.7
Sequence: ATGAAAGTGTTTGCAT
Locus tag: BLi04286
Name: gntR
Funciton: Gluconate operon transcriptional repressor
Locus tag: BLi04287
Name: gntK
Funciton: Gluconokinase (EC 2.7.1.12)
Locus tag: BLi04288
Name: gntP
Funciton: H+:gluconate symporter
Locus tag: BLi04289
Name: gntZ
Funciton: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)
gntR
Gluconate operon transcriptional repressor
gntK
Gluconokinase (EC 2.7.1.12)
gntP
H+:gluconate symporter
gntZ
6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)

Position: -207
Score: 4.5
Sequence: TTGACAACGCTTTCAC
Locus tag: BLi00994
Name: glpF
Funciton: Glycerol uptake facilitator protein
Locus tag: BLi00995
Name: glpK
Funciton: Glycerol kinase (EC 2.7.1.30)
glpF
Glycerol uptake facilitator protein
glpK
Glycerol kinase (EC 2.7.1.30)

Position: -115
Score: 4.6
Sequence: ATGTAAGCATTTTCTT
Locus tag: BLi03062
Name: mmgD
Funciton: Citrate synthase (si) (EC 2.3.3.1)
mmgD
Citrate synthase (si) (EC 2.3.3.1)

Position: -75
Score: 4.7
Sequence: TTGAAACCGTTACCAA
Locus tag: BLi03829
Name: kduI
Funciton: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17)
Locus tag: BLi03830
Name: kduD
Funciton: 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125)
kduI
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17)
kduD
2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125)

Position: -104
Score: 4.3
Sequence: GTGTAAACGTTATAAT
Locus tag: BLi03997
Name: pta
Funciton: Phosphate acetyltransferase (EC 2.3.1.8)
pta
Phosphate acetyltransferase (EC 2.3.1.8)

Position: -286
Score: 5.1
Sequence: ATGAAAGCGTTGACAT
Locus tag: BLi04215
Name: bglP
Funciton: PTS system, aryl-phospho-beta-glucoside-specific component IIABC (EC 2.7.1.69)
Locus tag: BLi04214
Name: bglH
Funciton: Aryl-phospho-beta-D-glucosidase (EC 3.2.1.86)
bglP
PTS system, aryl-phospho-beta-glucoside-specific component IIABC (EC 2.7.1.69)
bglH
Aryl-phospho-beta-D-glucosidase (EC 3.2.1.86)

Position: -75
Score: 4
Sequence: ATGTTAACGTTCACAT
Position: -43
Score: 4.5
Sequence: TTGTTAACGTTAACAT
Locus tag: BLi03516
Name: uxaC
Funciton: Uronate isomerase (EC 5.3.1.12)
Locus tag: BLi03515
Name: exuM
Funciton: Melibiose carrier protein, Na+/melibiose symporter
Locus tag: BLi03514
Name: exuR
Funciton: Transcriptional repressor of hexuronate utilization operon, LacI family
Locus tag: BLi03513
Name: uxaB
Funciton: Altronate oxidoreductase (EC 1.1.1.58)
Locus tag: BLi03512
Name: uxaA
Funciton: Altronate hydrolase (EC 4.2.1.7)
Locus tag: BLi03511
Name: null
Funciton: Polygalacturonase (EC 3.2.1.15)
uxaC
Uronate isomerase (EC 5.3.1.12)
exuM
Melibiose carrier protein, Na+/melibiose symporter
exuR
Transcriptional repressor of hexuronate utilization operon, LacI family
uxaB
Altronate oxidoreductase (EC 1.1.1.58)
uxaA
Altronate hydrolase (EC 4.2.1.7)
Polygalacturonase (EC 3.2.1.15)

Position: -154
Score: 4.9
Sequence: ATGAAAGCGTATTAAA
Locus tag: BLi04017
Name: sacP
Funciton: PTS sucrose-specific enzyme IIBC component
Locus tag: BLi04016
Name: sacA
Funciton: Sucrose-6-phosphate hydrolase (EC 3.2.1.26)
sacP
PTS sucrose-specific enzyme IIBC component
sacA
Sucrose-6-phosphate hydrolase (EC 3.2.1.26)

Position: -36
Score: 4.5
Sequence: TTGAAACCGGTACCAT
Locus tag: BLi03827
Name: kdgK
Funciton: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)
Locus tag: BLi03826
Name: kdgA
Funciton: 4-Hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) / 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
Locus tag: BLi03825
Name: kdgT
Funciton: 2-keto-3-deoxygluconate permease (KDG permease)
kdgK
2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)
kdgA
4-Hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) / 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
kdgT
2-keto-3-deoxygluconate permease (KDG permease)

Position: -41
Score: 4.7
Sequence: TTGAAATCGGTTTCAA
Locus tag: BLi03828
Name: kdgR
Funciton: Transcriptional regulator of pectin utilization, LacI family
kdgR
Transcriptional regulator of pectin utilization, LacI family

Position: -150
Score: 4.6
Sequence: TTGTAAACGCTTTTTT
Locus tag: BLi01728
Name: apbA
Funciton: 2-dehydropantoate 2-reductase (EC 1.1.1.169)
Locus tag: BLi01729
Name: yllA
Funciton: Hypothetical membrane spanning protein
apbA
2-dehydropantoate 2-reductase (EC 1.1.1.169)
yllA
Hypothetical membrane spanning protein

Position: -203
Score: 4.8
Sequence: TTGACAGCGCTTCCAT
Locus tag: BLi04254
Name: glpQ
Funciton: Glycerophosphoryl diester phosphodiesterase, periplasmic (EC 3.1.4.46)
Locus tag: BLi04255
Name: glpT
Funciton: MFS family major facilitator transporter, glycerol-3-phosphate:cation symporter
glpQ
Glycerophosphoryl diester phosphodiesterase, periplasmic (EC 3.1.4.46)
glpT
MFS family major facilitator transporter, glycerol-3-phosphate:cation symporter

Position: -96
Score: 4.3
Sequence: TTGAAAACGGGTTCTT
Position: -49
Score: 4.7
Sequence: TTGAAAGCGTTTGATT
Locus tag: BLi00330
Name: glcD
Funciton: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD
Locus tag: BLi00329
Name: glcF
Funciton: Predicted glycolate dehydrogenase, 2-subunit type (EC 1.1.99.14), iron-sulfur subunit GlcF
glcD
Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD
glcF
Predicted glycolate dehydrogenase, 2-subunit type (EC 1.1.99.14), iron-sulfur subunit GlcF

Position: 318
Score: 4.6
Sequence: GTGAAAACGCTTGCAG
Locus tag: BLi00796
Name: treP
Funciton: PTS system, trehalose-specific enzyme II, BC component (EC 2.7.1.69)
Locus tag: BLi00797
Name: treA
Funciton: Trehalose-6-phosphate hydrolase (EC 3.2.1.93)
Locus tag: BLi00798
Name: treR
Funciton: Transcriptional repressor of trehalose operon, GntR family
treP
PTS system, trehalose-specific enzyme II, BC component (EC 2.7.1.69)
treA
Trehalose-6-phosphate hydrolase (EC 3.2.1.93)
treR
Transcriptional repressor of trehalose operon, GntR family

Position: -115
Score: 4.6
Sequence: ATGTAAGCATTTTCTT
Locus tag: BLi03062
Name: citZ
Funciton: Citrate synthase (si) (EC 2.3.3.1)
Locus tag: BLi03061
Name: icd
Funciton: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)
Locus tag: BLi03060
Name: mdh
Funciton: Malate dehydrogenase (EC 1.1.1.37)
citZ
Citrate synthase (si) (EC 2.3.3.1)
icd
Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)
mdh
Malate dehydrogenase (EC 1.1.1.37)

Position: -265
Score: 4
Sequence: CTGATAGCGATTTCAT
Position: -239
Score: 4
Sequence: AAGAAAGCATTTTCCT
Locus tag: BLi02061
Name: araR
Funciton: Transcriptional repressor of arabinoside utilization operon, GntR family
araR
Transcriptional repressor of arabinoside utilization operon, GntR family

Position: -100
Score: 4.3
Sequence: GTGGAAGCGTTTTTAT
Locus tag: BLi02260
Name: odhA
Funciton: 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)
Locus tag: BLi02259
Name: odhB
Funciton: 2-oxoglutarate dehydrogenase E2 component
odhA
2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)
odhB
2-oxoglutarate dehydrogenase E2 component

Position: -123
Score: 4.6
Sequence: ATGAAAACGCTTCATT
Locus tag: BLi04282
Name: galK
Funciton: Galactokinase (EC 2.7.1.6)
Locus tag: BLi04283
Name: galE
Funciton: UDP-glucose 4-epimerase (EC 5.1.3.2)
Locus tag: BLi04284
Name: galT
Funciton: Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10)
galK
Galactokinase (EC 2.7.1.6)
galE
UDP-glucose 4-epimerase (EC 5.1.3.2)
galT
Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10)

Position: -65
Score: 5
Sequence: TTGTAAGCGTTTTAAT
Locus tag: BLi03028
Name: araA
Funciton: L-arabinose isomerase (EC 5.3.1.4)
Locus tag: BLi03027
Name: araB
Funciton: Ribulokinase (EC 2.7.1.16)
Locus tag: BLi03026
Name: araD
Funciton: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)
Locus tag: BLi03025
Name: araM
Funciton: Glycerol dehydrogenase (EC 1.1.1.6)
Locus tag: BLi03024
Name: araN
Funciton: Alpha-arabinosides ABC transport system, substrate-binding protein
Locus tag: BLi03023
Name: araP
Funciton: Alpha-arabinosides ABC transport system, permease protein 1
Locus tag: BLi03022
Name: araQ
Funciton: Alpha-arabinosides ABC transport system, permease protein 2
Locus tag: BLi03021
Name: abfA
Funciton: Alpha-N-arabinofuranosidase (EC 3.2.1.55)
araA
L-arabinose isomerase (EC 5.3.1.4)
araB
Ribulokinase (EC 2.7.1.16)
araD
L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)
araM
Glycerol dehydrogenase (EC 1.1.1.6)
araN
Alpha-arabinosides ABC transport system, substrate-binding protein
araP
Alpha-arabinosides ABC transport system, permease protein 1
araQ
Alpha-arabinosides ABC transport system, permease protein 2
abfA
Alpha-N-arabinofuranosidase (EC 3.2.1.55)

Position: -55
Score: 4.1
Sequence: AGGAAAATGCTTTCTT
Position: -29
Score: 4.5
Sequence: ATGAAATCGCTATCAG
Locus tag: BLi02062
Name: araB
Funciton: Ribulokinase (EC 2.7.1.16)
Locus tag: BLi02063
Name: araD
Funciton: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)
araB
Ribulokinase (EC 2.7.1.16)
araD
L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)

Position: -142
Score: 4.5
Sequence: ATGAAAGCGTTAAACT
Locus tag: BLi01712
Name: ylbB
Funciton: CBS domain protein
Locus tag: BLi01713
Name: ylbC
Funciton: Uncharacterized secreted protein with SCP domain
ylbB
CBS domain protein
ylbC
Uncharacterized secreted protein with SCP domain

Position: -97
Score: 5.1
Sequence: TTGACAGCGCTTACAA
Locus tag: BLi03169
Name: ytcP
Funciton: ABC superfamily ATP binding cassette transporter, membrane protein
Locus tag: BLi03168
Name: ytcQ
Funciton: Sugar ABC transporter substrate-binding protein
ytcP
ABC superfamily ATP binding cassette transporter, membrane protein
ytcQ
Sugar ABC transporter substrate-binding protein

Position: -51
Score: 4.9
Sequence: ATGAAAGCGCTTTTTA
Locus tag: BLi01140
Name: msmE
Funciton: Multiple sugar ABC transporter, substrate-binding protein
Locus tag: BLi01141
Name: msmF
Funciton: Multiple sugar ABC transporter, membrane-spanning permease protein MsmF
Locus tag: BLi01142
Name: msmG
Funciton: Multiple sugar ABC transporter, membrane-spanning permease protein MsmG
Locus tag: BLi01143
Name: melA
Funciton: Alpha-galactosidase (EC 3.2.1.22)
msmE
Multiple sugar ABC transporter, substrate-binding protein
msmF
Multiple sugar ABC transporter, membrane-spanning permease protein MsmF
msmG
Multiple sugar ABC transporter, membrane-spanning permease protein MsmG
melA
Alpha-galactosidase (EC 3.2.1.22)

Position: -75
Score: 4.2
Sequence: TTGAAAACTTTTACCT
Locus tag: BLi01139
Name: msmR
Funciton: Transcriptional regulator of alpha-galactoside utilization, LacI family
msmR
Transcriptional regulator of alpha-galactoside utilization, LacI family

Position: -55
Score: 4.5
Sequence: AAGAAAGCGTTTTATT
Locus tag: BLi03822
Name: pmi
Funciton: Mannose-6-phosphate isomerase (EC 5.3.1.8)
pmi
Mannose-6-phosphate isomerase (EC 5.3.1.8)

Position: -148
Score: 4.1
Sequence: AATGAAGCGTTTTCAT
Locus tag: BLi04281
Name: ganR
Funciton: Galactose operon repressor, GalR-LacI family of transcriptional regulators
ganR
Galactose operon repressor, GalR-LacI family of transcriptional regulators
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD