Regulon of SAM in Bacillus pumilus SAFR-032

Properties
Regulator type:	RNA regulatory element
Name:	SAM
RFAM:	RF00162
Regulation mode:
Biological process:	Methionine biosynthesis
Effector:	S-adenosylmethionine
Regulog:	SAM - Bacillales
Under regulation:
- Genes	25
- Operons	9

Member of regulog collections

By taxonomy - Bacillales
By RNA motif - SAM
By effector - S-adenosylmethionine
By pathway - Methionine biosynthesis

Regulated operons
	Locus Tag	Name	Function
Position: -173 Score: 86.4 Sequence: TCTTATCAAGAGTAG... Locus tag: BPUM_1252 Name: mtnW Funciton: 2,3-diketo-5-methylthiopentyl-1-phosphate enolase Locus tag: BPUM_1253 Name: mtnX Funciton: 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase Locus tag: BPUM_1254 Name: mtnB Funciton: Methylthioribulose-1-phosphate dehydratase (EC 4.2.1.109) Locus tag: BPUM_1255 Name: mtnD Funciton: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase (EC 1.13.11.54)
	BPUM_1252	mtnW	2,3-diketo-5-methylthiopentyl-1-phosphate enolase
	BPUM_1253	mtnX	2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase
	BPUM_1254	mtnB	Methylthioribulose-1-phosphate dehydratase (EC 4.2.1.109)
	BPUM_1255	mtnD	1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase (EC 1.13.11.54)
Position: -239 Score: 62 Sequence: TCTCTTATCGAGAGT... Locus tag: BPUM_1250 Name: mtnK Funciton: 5-methylthioribose kinase (EC 2.7.1.100) Locus tag: BPUM_1249 Name: mtnA Funciton: Methylthioribose-1-phosphate isomerase (EC 5.3.1.23)
	BPUM_1250	mtnK	5-methylthioribose kinase (EC 2.7.1.100)
	BPUM_1249	mtnA	Methylthioribose-1-phosphate isomerase (EC 5.3.1.23)
Position: -280 Score: 94.7 Sequence: TCTCTTATCAAGAGA... Locus tag: BPUM_3498 Name: mtrB Funciton: Methythioribose ABC transport system, substrate-binding protein Locus tag: BPUM_3497 Name: mtrA Funciton: Methythioribose ABC transport system, ATP-binding protein Locus tag: BPUM_3496 Name: mtrC Funciton: Methythioribose ABC transport system, permease protein
	BPUM_3498	mtrB	Methythioribose ABC transport system, substrate-binding protein
	BPUM_3497	mtrA	Methythioribose ABC transport system, ATP-binding protein
	BPUM_3496	mtrC	Methythioribose ABC transport system, permease protein
Position: -330 Score: 72.2 Sequence: ACTCTTATCCCGAGT... Locus tag: BPUM_2686 Name: metK Funciton: S-adenosylmethionine synthetase (EC 2.5.1.6)
	BPUM_2686	metK	S-adenosylmethionine synthetase (EC 2.5.1.6)
Position: -264 Score: 86.4 Sequence: TCTCTTATTAAGAGA... Locus tag: BPUM_2932 Name: metN Funciton: Methionine ABC transporter ATP-binding protein Locus tag: BPUM_2931 Name: metP Funciton: Methionine ABC transporter permease protein Locus tag: BPUM_2930 Name: metQ Funciton: Methionine ABC transporter substrate-binding protein
	BPUM_2932	metN	Methionine ABC transporter ATP-binding protein
	BPUM_2931	metP	Methionine ABC transporter permease protein
	BPUM_2930	metQ	Methionine ABC transporter substrate-binding protein
Position: -200 Score: 92.6 Sequence: TCTTATCGTGAGAGG... Locus tag: BPUM_1119 Name: metI Funciton: Cystathionine gamma-synthase (EC 2.5.1.48) Locus tag: BPUM_1120 Name: metC Funciton: Cystathionine beta-lyase (EC 4.4.1.8)
	BPUM_1119	metI	Cystathionine gamma-synthase (EC 2.5.1.48)
	BPUM_1120	metC	Cystathionine beta-lyase (EC 4.4.1.8)
Position: -198 Score: 96.7 Sequence: TTTCTTATCAAGAGA... Locus tag: BPUM_1027 Name: metF Funciton: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) / Homolog of homocysteine-binding domain Locus tag: BPUM_1026 Name: metH Funciton: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13)
	BPUM_1027	metF	5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) / Homolog of homocysteine-binding domain
	BPUM_1026	metH	5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13)
Position: -199 Score: 79.4 Sequence: CCTTATTAAGAGTGG... Locus tag: BPUM_3562 Name: metE2 Funciton: Putative methionine synthase II (cobalamin-independent)
	BPUM_3562	metE2	Putative methionine synthase II (cobalamin-independent)
Position: -336 Score: 90.1 Sequence: ACTTATCCAGAGAGG... Locus tag: BPUM_1456 Name: cysH Funciton: Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) Locus tag: BPUM_1457 Name: cysP Funciton: Sulfate permease, Pit-type Locus tag: BPUM_1458 Name: sat Funciton: Sulfate adenylyltransferase, dissimilatory-type (EC 2.7.7.4) Locus tag: BPUM_1459 Name: cysC Funciton: Adenylylsulfate kinase (EC 2.7.1.25) Locus tag: BPUM_1460 Name: cysG Funciton: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) Locus tag: BPUM_1461 Name: sirB Funciton: Sirohydrochlorin ferrochelatase (EC 4.99.1.4) Locus tag: BPUM_1462 Name: sirC Funciton: Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76)
	BPUM_1456	cysH	Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10)
	BPUM_1457	cysP	Sulfate permease, Pit-type
	BPUM_1458	sat	Sulfate adenylyltransferase, dissimilatory-type (EC 2.7.7.4)
	BPUM_1459	cysC	Adenylylsulfate kinase (EC 2.7.1.25)
	BPUM_1460	cysG	Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
	BPUM_1461	sirB	Sirohydrochlorin ferrochelatase (EC 4.99.1.4)
	BPUM_1462	sirC	Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76)

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of SAM in Bacillus pumilus SAFR-032

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --