Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of TPP in Shewanella woodyi ATCC 51908

Properties
Regulator type: RNA regulatory element
Name: TPP
RFAM: RF00059
Regulation mode:
Biological process: Thiamine biosynthesis
Effector: Thiamine pyrophosphate
Regulog: TPP - Shewanellaceae
Under regulation:
- Genes 10
- Operons 2
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -188
Score: 70.5
Sequence: CCGGCGCCAAGGGGT...
Locus tag: Swoo_1886
Name: omp_thi
Funciton: predicted thiamin-specific outer membrane transporter, TonB-dependent
Locus tag: Swoo_1887
Name: ykoF
Funciton: Thiamin/hydroxymethyl pyrimidine-binding YkoF, putative
Locus tag: Swoo_1888
Name: pnuT
Funciton: Predicted thiamin transporter PnuT
Locus tag: Swoo_1889
Name: thiK
Funciton: predicted thiamine kinase, aminoglycoside phosphotransferase family
omp_thi
predicted thiamin-specific outer membrane transporter, TonB-dependent
ykoF
Thiamin/hydroxymethyl pyrimidine-binding YkoF, putative
pnuT
Predicted thiamin transporter PnuT
thiK
predicted thiamine kinase, aminoglycoside phosphotransferase family

Position: -243
Score: 76.3
Sequence: TGGCATCTTGTCGGA...
Locus tag: Swoo_2592
Name: thiC
Funciton: Phosphomethylpyrimidine synthase
Locus tag: Swoo_2591
Name: thiDE
Funciton: Phosphomethylpyrimidine kinase (EC 2.7.4.7) / Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
Locus tag: Swoo_2590
Name: thiF
Funciton: Sulfur carrier protein adenylyltransferase ThiF
Locus tag: Swoo_2589
Name: thiS
Funciton: Sulfur carrier protein ThiS
Locus tag: Swoo_2588
Name: thiG
Funciton: Thiazole synthase
Locus tag: Swoo_2587
Name: thiH
Funciton: 2-iminoacetate synthase (EC 1.3.99.n2)
thiC
Phosphomethylpyrimidine synthase
thiDE
Phosphomethylpyrimidine kinase (EC 2.7.4.7) / Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
thiF
Sulfur carrier protein adenylyltransferase ThiF
thiS
Sulfur carrier protein ThiS
thiG
Thiazole synthase
thiH
2-iminoacetate synthase (EC 1.3.99.n2)
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Regulated Genes [ Tab delimited format ] DOWNLOAD
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