Regulon of TPP in Shewanella woodyi ATCC 51908

Properties
Regulator type:	RNA regulatory element
Name:	TPP
RFAM:	RF00059
Regulation mode:
Biological process:	Thiamine biosynthesis
Effector:	Thiamine pyrophosphate
Regulog:	TPP - Shewanellaceae
Under regulation:
- Genes	10
- Operons	2

Member of regulog collections

By taxonomy - Shewanellaceae
By RNA motif - TPP
By effector - Thiamine pyrophosphate
By pathway - Thiamine biosynthesis

Regulated operons
	Locus Tag	Name	Function
Position: -188 Score: 70.5 Sequence: CCGGCGCCAAGGGGT... Locus tag: Swoo_1886 Name: omp_thi Funciton: predicted thiamin-specific outer membrane transporter, TonB-dependent Locus tag: Swoo_1887 Name: ykoF Funciton: Thiamin/hydroxymethyl pyrimidine-binding YkoF, putative Locus tag: Swoo_1888 Name: pnuT Funciton: Predicted thiamin transporter PnuT Locus tag: Swoo_1889 Name: thiK Funciton: predicted thiamine kinase, aminoglycoside phosphotransferase family
	Swoo_1886	omp_thi	predicted thiamin-specific outer membrane transporter, TonB-dependent
	Swoo_1887	ykoF	Thiamin/hydroxymethyl pyrimidine-binding YkoF, putative
	Swoo_1888	pnuT	Predicted thiamin transporter PnuT
	Swoo_1889	thiK	predicted thiamine kinase, aminoglycoside phosphotransferase family
Position: -243 Score: 76.3 Sequence: TGGCATCTTGTCGGA... Locus tag: Swoo_2592 Name: thiC Funciton: Phosphomethylpyrimidine synthase Locus tag: Swoo_2591 Name: thiDE Funciton: Phosphomethylpyrimidine kinase (EC 2.7.4.7) / Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) Locus tag: Swoo_2590 Name: thiF Funciton: Sulfur carrier protein adenylyltransferase ThiF Locus tag: Swoo_2589 Name: thiS Funciton: Sulfur carrier protein ThiS Locus tag: Swoo_2588 Name: thiG Funciton: Thiazole synthase Locus tag: Swoo_2587 Name: thiH Funciton: 2-iminoacetate synthase (EC 1.3.99.n2)
	Swoo_2592	thiC	Phosphomethylpyrimidine synthase
	Swoo_2591	thiDE	Phosphomethylpyrimidine kinase (EC 2.7.4.7) / Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
	Swoo_2590	thiF	Sulfur carrier protein adenylyltransferase ThiF
	Swoo_2589	thiS	Sulfur carrier protein ThiS
	Swoo_2588	thiG	Thiazole synthase
	Swoo_2587	thiH	2-iminoacetate synthase (EC 1.3.99.n2)

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD