Regulon of TPP in Shewanella halifaxensis HAW-EB4

Properties
Regulator type:	RNA regulatory element
Name:	TPP
RFAM:	RF00059
Regulation mode:
Biological process:	Thiamine biosynthesis
Effector:	Thiamine pyrophosphate
Regulog:	TPP - Shewanellaceae
Under regulation:
- Genes	10
- Operons	2

Member of regulog collections

By taxonomy - Shewanellaceae
By RNA motif - TPP
By effector - Thiamine pyrophosphate
By pathway - Thiamine biosynthesis

Regulated operons
	Locus Tag	Name	Function
Position: -184 Score: 66.4 Sequence: CGCGCTCGCCAAGGG... Locus tag: Shal_2461 Name: omp_thi Funciton: predicted thiamin-specific outer membrane transporter, TonB-dependent Locus tag: Shal_2460 Name: ykoF Funciton: Thiamin/hydroxymethyl pyrimidine-binding YkoF, putative Locus tag: Shal_2459 Name: pnuT Funciton: Predicted thiamin transporter PnuT Locus tag: Shal_2458 Name: thiK Funciton: predicted thiamine kinase, aminoglycoside phosphotransferase family
	Shal_2461	omp_thi	predicted thiamin-specific outer membrane transporter, TonB-dependent
	Shal_2460	ykoF	Thiamin/hydroxymethyl pyrimidine-binding YkoF, putative
	Shal_2459	pnuT	Predicted thiamin transporter PnuT
	Shal_2458	thiK	predicted thiamine kinase, aminoglycoside phosphotransferase family
Position: -243 Score: 71.6 Sequence: TCATCTTGTCGGAGT... Locus tag: Shal_1900 Name: thiC Funciton: Phosphomethylpyrimidine synthase Locus tag: Shal_1901 Name: thiDE Funciton: Phosphomethylpyrimidine kinase (EC 2.7.4.7) / Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) Locus tag: Shal_1902 Name: thiF Funciton: Sulfur carrier protein adenylyltransferase ThiF Locus tag: Shal_1903 Name: thiS Funciton: Sulfur carrier protein ThiS Locus tag: Shal_1904 Name: thiG Funciton: Thiazole synthase Locus tag: Shal_1905 Name: thiH Funciton: 2-iminoacetate synthase (EC 1.3.99.n2)
	Shal_1900	thiC	Phosphomethylpyrimidine synthase
	Shal_1901	thiDE	Phosphomethylpyrimidine kinase (EC 2.7.4.7) / Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
	Shal_1902	thiF	Sulfur carrier protein adenylyltransferase ThiF
	Shal_1903	thiS	Sulfur carrier protein ThiS
	Shal_1904	thiG	Thiazole synthase
	Shal_1905	thiH	2-iminoacetate synthase (EC 1.3.99.n2)

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD