Regulon of TPP in Shewanella amazonensis SB2B

Properties
Regulator type:	RNA regulatory element
Name:	TPP
RFAM:	RF00059
Regulation mode:
Biological process:	Thiamine biosynthesis
Effector:	Thiamine pyrophosphate
Regulog:	TPP - Shewanellaceae
Under regulation:
- Genes	10
- Operons	2

Member of regulog collections

By taxonomy - Shewanellaceae
By RNA motif - TPP
By effector - Thiamine pyrophosphate
By pathway - Thiamine biosynthesis

Regulated operons
	Locus Tag	Name	Function
Position: -158 Score: 69 Sequence: GCGGCGCCAAGGGGT... Locus tag: Sama_1451 Name: omp_thi Funciton: predicted thiamin-specific outer membrane transporter, TonB-dependent Locus tag: Sama_1452 Name: ykoF Funciton: Thiamin/hydroxymethyl pyrimidine-binding YkoF, putative Locus tag: Sama_1453 Name: pnuT Funciton: Predicted thiamin transporter PnuT Locus tag: Sama_1454 Name: thiK Funciton: predicted thiamine kinase, aminoglycoside phosphotransferase family
	Sama_1451	omp_thi	predicted thiamin-specific outer membrane transporter, TonB-dependent
	Sama_1452	ykoF	Thiamin/hydroxymethyl pyrimidine-binding YkoF, putative
	Sama_1453	pnuT	Predicted thiamin transporter PnuT
	Sama_1454	thiK	predicted thiamine kinase, aminoglycoside phosphotransferase family
Position: -253 Score: 71 Sequence: CCAGCACTTGTCGGA... Locus tag: Sama_1860 Name: thiC Funciton: Phosphomethylpyrimidine synthase Locus tag: Sama_1859 Name: thiDE Funciton: Phosphomethylpyrimidine kinase (EC 2.7.4.7) / Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) Locus tag: Sama_1858 Name: thiF Funciton: Sulfur carrier protein adenylyltransferase ThiF Locus tag: Sama_1857 Name: thiS Funciton: Sulfur carrier protein ThiS Locus tag: Sama_1856 Name: thiG Funciton: Thiazole synthase Locus tag: Sama_1855 Name: thiH Funciton: 2-iminoacetate synthase (EC 1.3.99.n2)
	Sama_1860	thiC	Phosphomethylpyrimidine synthase
	Sama_1859	thiDE	Phosphomethylpyrimidine kinase (EC 2.7.4.7) / Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
	Sama_1858	thiF	Sulfur carrier protein adenylyltransferase ThiF
	Sama_1857	thiS	Sulfur carrier protein ThiS
	Sama_1856	thiG	Thiazole synthase
	Sama_1855	thiH	2-iminoacetate synthase (EC 1.3.99.n2)

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD