Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog TreR - Bacillales

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode: repressor
Biological process: Trehalose utilization
Effector: Trehalose-6-phosphate
Phylum: Firmicutes
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 20 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Bacillus subtilis subsp. subtilis str. 168 3 1
Bacillus amyloliquefaciens FZB42 3 1
Bacillus pumilus SAFR-032 3 1
Bacillus licheniformis DSM 13 3 1
Anoxybacillus flavithermus WK1 3 1
Geobacillus kaustophilus HTA426 3 1
Bacillus cereus ATCC 14579 2 1
Bacillus halodurans C-125 3 2
Bacillus clausii KSM-K16 3 2
Oceanobacillus iheyensis HTE831
Paenibacillus sp. JDR-2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
treP
*
Bacillus subtilis subsp. subtilis str. 168

Site:
position = -45
score = 6.85142
sequence = TAAGTTGTATATACAAGTTA

Site:
position = -77
score = 4.73743
sequence = CTACCTGTATATACAGGAAT

Gene: BSU07800: PTS system, trehalose-specific IIB component (EC 2.7.1.69) / PTS system, trehalose-specific IIC component (EC 2.7.1.69)
*
Bacillus amyloliquefaciens FZB42

Site:
position = -56
score = 6.77471
sequence = AAACATGTATATACAAGTTT

Site:
position = -89
score = 5.16592
sequence = CGACATGTATATACATCATT

Gene: RBAM_007970: PTS system, trehalose-specific IIB component (EC 2.7.1.69) / PTS system, trehalose-specific IIC component (EC 2.7.1.69)
*
Bacillus pumilus SAFR-032

Site:
position = -63
score = 6.77471
sequence = AAACATGTATATACAAGTTT

Site:
position = -95
score = 4.98658
sequence = CTACATGTATATACAAATAT

Gene: BPUM_0728: PTS system, trehalose-specific IIB component (EC 2.7.1.69) / PTS system, trehalose-specific IIC component (EC 2.7.1.69)
*
Bacillus licheniformis DSM 13

Site:
position = -43
score = 6.65239
sequence = TAACATGTATATACAGGTTA

Site:
position = -75
score = 5.099
sequence = CTACTTGTATATACAGGAAT

Gene: BLi00796: PTS system, trehalose-specific IIB component (EC 2.7.1.69) / PTS system, trehalose-specific IIC component (EC 2.7.1.69)
*
Anoxybacillus flavithermus WK1

Site:
position = -99
score = 6.99874
sequence = CAACTTGTATATACAAGTTA

Site:
position = -61
score = 6.44146
sequence = CGACTTGTATATACAAGTTA

Gene: Aflv_1441: PTS system, trehalose-specific IIB component (EC 2.7.1.69) / PTS system, trehalose-specific IIC component (EC 2.7.1.69)
*
Geobacillus kaustophilus HTA426

Site:
position = -95
score = 5.94824
sequence = CAGGTTGTATATACAAGTTT

Site:
position = -124
score = 6.82013
sequence = AAACTTGTATATACAAGATA

Gene: GK1747: PTS system, trehalose-specific IIB component (EC 2.7.1.69) / PTS system, trehalose-specific IIC component (EC 2.7.1.69)
*
Bacillus cereus ATCC 14579

Site:
position = -91
score = 5.66256
sequence = AAACTCGTATATACGAGTGT

Site:
position = -67
score = 6.45909
sequence = TAACTTATATATACGAGTTA

Gene: BC0631: PTS system, trehalose-specific IIB component (EC 2.7.1.69) / PTS system, trehalose-specific IIC component (EC 2.7.1.69)
*
Bacillus halodurans C-125

Site:
position = -102
score = 6.93975
sequence = TAACTTGTATATACAAGATA

Site:
position = -65
score = 5.17917
sequence = GGACTTGTATATACAAATTC

Gene: BH2216: PTS system, trehalose-specific IIB component (EC 2.7.1.69) / PTS system, trehalose-specific IIC component (EC 2.7.1.69)
*
Bacillus clausii KSM-K16

Site:
position = -115
score = 5.29716
sequence = GTATTTGTATATACAGGTTA

Site:
position = -75
score = 4.99092
sequence = ATATTTGTATATACAAATTC

Gene: ABC1263: PTS system, trehalose-specific IIB component (EC 2.7.1.69) / PTS system, trehalose-specific IIC component (EC 2.7.1.69)
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
PTS system, trehalose-specific IIB component (EC 2.7.1.69) / PTS system, trehalose-specific IIC component (EC 2.7.1.69)
treA
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU07810: Trehalose-6-phosphate hydrolase (EC 3.2.1.93)
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_007980: Trehalose-6-phosphate hydrolase (EC 3.2.1.93)
 
Bacillus pumilus SAFR-032

Gene: BPUM_0729: Trehalose-6-phosphate hydrolase (EC 3.2.1.93)
 
Bacillus licheniformis DSM 13

Gene: BLi00797: Trehalose-6-phosphate hydrolase (EC 3.2.1.93)
 
Anoxybacillus flavithermus WK1

Gene: Aflv_1440: Trehalose-6-phosphate hydrolase (EC 3.2.1.93)
 
Geobacillus kaustophilus HTA426

Gene: GK1746: Trehalose-6-phosphate hydrolase (EC 3.2.1.93)
 
Bacillus cereus ATCC 14579

Gene: BC0632: Trehalose-6-phosphate hydrolase (EC 3.2.1.93)
*
Bacillus halodurans C-125

Site:
position = -100
score = 6.99874
sequence = CAACTTGTATATACAAGTTA

Gene: BH0872: Trehalose-6-phosphate hydrolase (EC 3.2.1.93)
*
Bacillus clausii KSM-K16

Site:
position = -66
score = 6.08728
sequence = GAACTTGTATATACAAGTGT

Gene: ABC1264: Trehalose-6-phosphate hydrolase (EC 3.2.1.93)
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Trehalose-6-phosphate hydrolase (EC 3.2.1.93)
treR
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU07820: Trehalose operon transcriptional repressor, GntR family
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_007990: Trehalose operon transcriptional repressor, GntR family
 
Bacillus pumilus SAFR-032

Gene: BPUM_0730: Trehalose operon transcriptional repressor, GntR family
 
Bacillus licheniformis DSM 13

Gene: BLi00798: Trehalose operon transcriptional repressor, GntR family
 
Anoxybacillus flavithermus WK1

Gene: Aflv_1439: Trehalose operon transcriptional repressor, GntR family
 
Geobacillus kaustophilus HTA426

Gene: GK1745: Trehalose operon transcriptional repressor, GntR family
 
Bacillus cereus ATCC 14579

Gene: BC0630: Trehalose operon transcriptional repressor, GntR family
 
Bacillus halodurans C-125

Gene: BH0873: Trehalose operon transcriptional repressor, GntR family
 
Bacillus clausii KSM-K16

Gene: ABC1265: Trehalose operon transcriptional repressor, GntR family
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Trehalose operon transcriptional repressor, GntR family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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