Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog NtdR - Bacillales

Properties
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode: activator
Biological process: Neotrehalosadiamine biosynthesis
Effector: 3,3'-neotrehalosadiamine
Phylum: Firmicutes
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 7 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Bacillus subtilis subsp. subtilis str. 168 4 2
Bacillus amyloliquefaciens FZB42
Bacillus pumilus SAFR-032 4 2
Bacillus licheniformis DSM 13 4 2
Anoxybacillus flavithermus WK1
Geobacillus kaustophilus HTA426
Bacillus cereus ATCC 14579
Bacillus halodurans C-125
Bacillus clausii KSM-K16
Oceanobacillus iheyensis HTE831
Paenibacillus sp. JDR-2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
ntdA
*
Bacillus subtilis subsp. subtilis str. 168

Site:
position = -74
score = 5.34735
sequence = ATGTTACCGATTTCAG

Gene: BSU10550: NTD biosynthesis operon protein NtdA
 
Bacillus amyloliquefaciens FZB42
*
Bacillus pumilus SAFR-032

Site:
position = -78
score = 5.64668
sequence = CTGAAATCGATAACAT

Gene: BPUM_0280: NTD biosynthesis operon protein NtdA
*
Bacillus licheniformis DSM 13

Site:
position = -77
score = 5.78072
sequence = ATGGTATCGATTCCAT

Gene: BLi03946: NTD biosynthesis operon protein NtdA
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
 
Bacillus cereus ATCC 14579
 
Bacillus halodurans C-125
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
NTD biosynthesis operon protein NtdA
ntdB
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU10540: NTD biosynthesis operon putative hydrolase NtdB (EC 3.-.-.-)
 
Bacillus amyloliquefaciens FZB42
 
Bacillus pumilus SAFR-032

Gene: BPUM_0281: NTD biosynthesis operon putative hydrolase NtdB (EC 3.-.-.-)
 
Bacillus licheniformis DSM 13

Gene: BLi03945: NTD biosynthesis operon putative hydrolase NtdB (EC 3.-.-.-)
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
 
Bacillus cereus ATCC 14579
 
Bacillus halodurans C-125
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
NTD biosynthesis operon putative hydrolase NtdB (EC 3.-.-.-)
ntdC
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU10530: NTD biosynthesis operon putative oxidoreductase NtdC (EC 1.-.-.-)
 
Bacillus amyloliquefaciens FZB42
 
Bacillus pumilus SAFR-032

Gene: BPUM_0282: NTD biosynthesis operon putative oxidoreductase NtdC (EC 1.-.-.-)
 
Bacillus licheniformis DSM 13

Gene: BLi03944: NTD biosynthesis operon putative oxidoreductase NtdC (EC 1.-.-.-)
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426

Gene: GK1899: NTD biosynthesis operon putative oxidoreductase NtdC (EC 1.-.-.-)
 
Bacillus cereus ATCC 14579
 
Bacillus halodurans C-125
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
NTD biosynthesis operon putative oxidoreductase NtdC (EC 1.-.-.-)
 
CRON 2.
ntdR
*
Bacillus subtilis subsp. subtilis str. 168

Site:
position = -45
score = 5.34735
sequence = CTGAAATCGGTAACAT

Gene: BSU10560: Transcriptional regulator of neotrehalosadiamine utilization, LacI family
 
Bacillus amyloliquefaciens FZB42
*
Bacillus pumilus SAFR-032

Site:
position = -47
score = 5.64668
sequence = ATGTTATCGATTTCAG

Site:
position = -366
score = 4.81084
sequence = ATGTCATCGATCTCAT

Gene: BPUM_0279: Transcriptional regulator of neotrehalosadiamine utilization, LacI family
*
Bacillus licheniformis DSM 13

Site:
position = -45
score = 5.78072
sequence = ATGGAATCGATACCAT

Gene: BLi03947: Transcriptional regulator of neotrehalosadiamine utilization, LacI family
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
 
Bacillus cereus ATCC 14579
 
Bacillus halodurans C-125
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Transcriptional regulator of neotrehalosadiamine utilization, LacI family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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