Regulog Fnr - Bacillales
| Regulator type: | Transcription factor |
| Regulator family: | CRP |
| Regulation mode: | activator |
| Biological process: | Anaerobic metabolism |
| Effector: | Oxygen |
| Phylum: | Firmicutes |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Bacillales
- By TF family - CRP
- By effector - Oxygen
- By pathway - Anaerobic metabolism
| Genome | Genes | Operons |
|---|---|---|
| Bacillus subtilis subsp. subtilis str. 168 | 10 | 5 |
| Bacillus amyloliquefaciens FZB42 | 8 | 4 |
| Bacillus pumilus SAFR-032 | 2 | 1 |
| Bacillus licheniformis DSM 13 | 13 | 7 |
| Anoxybacillus flavithermus WK1 | 1 | 1 |
| Geobacillus kaustophilus HTA426 | 2 | 2 |
| Bacillus cereus ATCC 14579 | 2 | 2 |
| Bacillus halodurans C-125 | 6 | 4 |
| Bacillus clausii KSM-K16 | 1 | 1 |
| Oceanobacillus iheyensis HTE831 | 1 | 1 |
| Paenibacillus sp. JDR-2 | 1 | 1 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| ywcJ |
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Bacillus subtilis subsp. subtilis str. 168 Site: position = -64 score = 6.02949 sequence = TGTGAAATACTTCACA Gene: BSU38060: Formate/nitrite family of transporters |
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Bacillus licheniformis DSM 13 Site: position = -87 score = 5.33275 sequence = TGTGAAATGTTTCACA Gene: BLi04135: Formate/nitrite family of transporters |
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Anoxybacillus flavithermus WK1 Site: position = -41 score = 5.28145 sequence = TGTGAAAAACATCACA Gene: Aflv_1436: Formate/nitrite family of transporters |
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Formate/nitrite family of transporters |
| CRON 2. | ||||||||||||
| naoX |
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Paenibacillus sp. JDR-2 Site: position = -40 score = 5.42139 sequence = TGTGAATAATTTCACA Site: position = -205 score = 6.15755 sequence = TGTGAATTAATTCACA Site: position = -271 score = 5.32087 sequence = TGTGAAATTAATCACA Gene: Pjdr2_2160: FAD-dependent pyridine nucleotide-disulphide oxidoreductase |
FAD-dependent pyridine nucleotide-disulphide oxidoreductase |
| CRON 3. | ||||||||||||
| BH0228 |
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Bacillus licheniformis DSM 13 Site: position = -322 score = 5.82845 sequence = TGTGATGTACGTCACA Gene: BLi02075: Conserved hypothetical protein |
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Bacillus halodurans C-125 Site: position = -361 score = 5.71368 sequence = TGTGATATAGATCACA Gene: BH0228: Conserved hypothetical protein |
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Conserved hypothetical protein |
| narG |
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Bacillus subtilis subsp. subtilis str. 168 Site: position = -81 score = 5.76498 sequence = TGTGACATAGTTCACA Gene: BSU37280: Respiratory nitrate reductase alpha chain (EC 1.7.99.4) |
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Bacillus amyloliquefaciens FZB42 Site: position = -81 score = 5.76498 sequence = TGTGACATAGTTCACA Gene: RBAM_034430: Respiratory nitrate reductase alpha chain (EC 1.7.99.4) |
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Gene: BLi02074: Respiratory nitrate reductase alpha chain (EC 1.7.99.4) |
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Gene: BC2118: Respiratory nitrate reductase alpha chain (EC 1.7.99.4) |
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Gene: ABC0715: Respiratory nitrate reductase alpha chain (EC 1.7.99.4) |
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Respiratory nitrate reductase alpha chain (EC 1.7.99.4) |
| narH |
Gene: BSU37270: Respiratory nitrate reductase beta chain (EC 1.7.99.4) |
Gene: RBAM_034420: Respiratory nitrate reductase beta chain (EC 1.7.99.4) |
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Gene: BLi02073: Respiratory nitrate reductase beta chain (EC 1.7.99.4) |
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Gene: BC2119: Respiratory nitrate reductase beta chain (EC 1.7.99.4) |
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Gene: ABC0716: Respiratory nitrate reductase beta chain (EC 1.7.99.4) |
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Respiratory nitrate reductase beta chain (EC 1.7.99.4) |
| narJ |
Gene: BSU37260: Respiratory nitrate reductase delta chain (EC 1.7.99.4) |
Gene: RBAM_034410: Respiratory nitrate reductase delta chain (EC 1.7.99.4) |
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Gene: BLi02072: Respiratory nitrate reductase delta chain (EC 1.7.99.4) |
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Gene: GK1827: Respiratory nitrate reductase delta chain (EC 1.7.99.4) |
Gene: BC2120: Respiratory nitrate reductase delta chain (EC 1.7.99.4) |
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Gene: ABC0717: Respiratory nitrate reductase delta chain (EC 1.7.99.4) |
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Respiratory nitrate reductase delta chain (EC 1.7.99.4) |
| narI |
Gene: BSU37250: Respiratory nitrate reductase gamma chain (EC 1.7.99.4) |
Gene: RBAM_034400: Respiratory nitrate reductase gamma chain (EC 1.7.99.4) |
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Gene: BLi02071: Respiratory nitrate reductase gamma chain (EC 1.7.99.4) |
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Gene: GK1828: Respiratory nitrate reductase gamma chain (EC 1.7.99.4) |
Gene: BC2121: Respiratory nitrate reductase gamma chain (EC 1.7.99.4) |
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Gene: ABC0718: Respiratory nitrate reductase gamma chain (EC 1.7.99.4) |
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Respiratory nitrate reductase gamma chain (EC 1.7.99.4) |
| CRON 4. | ||||||||||||
| coxA |
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Gene: Aflv_1360: Cytochrome c oxidase (B(O/a)3-type) chain II (EC 1.9.3.1) |
Gene: GK1547: Cytochrome c oxidase (B(O/a)3-type) chain II (EC 1.9.3.1) |
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Bacillus halodurans C-125 Site: position = -224 score = 5.81866 sequence = TGTGATATAAGTCACA Gene: BH0740: Cytochrome c oxidase (B(O/a)3-type) chain II (EC 1.9.3.1) |
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Gene: OB1745: Cytochrome c oxidase (B(O/a)3-type) chain II (EC 1.9.3.1) |
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Cytochrome c oxidase (B(O/a)3-type) chain II (EC 1.9.3.1) |
| coxB |
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Gene: Aflv_1359: Cytochrome c oxidase (B(O/a)3-type) chain I (EC 1.9.3.1) |
Gene: GK1546: Cytochrome c oxidase (B(O/a)3-type) chain I (EC 1.9.3.1) |
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Gene: BH0739: Cytochrome c oxidase (B(O/a)3-type) chain I (EC 1.9.3.1) |
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Gene: OB1746: Cytochrome c oxidase (B(O/a)3-type) chain I (EC 1.9.3.1) |
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Cytochrome c oxidase (B(O/a)3-type) chain I (EC 1.9.3.1) |
| CRON 5. | ||||||||||||
| narK |
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Bacillus subtilis subsp. subtilis str. 168 Site: position = -80 score = 6.01761 sequence = TGTGATGTAATTCACA Gene: BSU37320: Nitrate/nitrite transporter |
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Bacillus amyloliquefaciens FZB42 Site: position = -79 score = 6.01761 sequence = TGTGATGTAATTCACA Gene: RBAM_034470: Nitrate/nitrite transporter |
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Bacillus licheniformis DSM 13 Site: position = -95 score = 5.96839 sequence = TGTGACGTAATTCACA Gene: BLi02081: Nitrate/nitrite transporter |
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Geobacillus kaustophilus HTA426 Site: position = -68 score = 4.6987 sequence = TGTGATCAACCTCACA Gene: GK0766: Nitrate/nitrite transporter |
Gene: BC2128: Nitrate/nitrite transporter |
Gene: BH0232: Nitrate/nitrite transporter |
2
Bacillus clausii KSM-K16 Gene: ABC0722: Nitrate/nitrite transporter Gene: ABC0722: Nitrate/nitrite transporter |
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Nitrate/nitrite transporter |
| fnr |
Gene: BSU37310: Transcriptional regulator of anaerobic metabolism, FNR family |
Gene: RBAM_034460: Transcriptional regulator of anaerobic metabolism, FNR family |
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Gene: BLi02080: Transcriptional regulator of anaerobic metabolism, FNR family |
Gene: Aflv_2153: Transcriptional regulator of anaerobic metabolism, FNR family |
Gene: GK0768: Transcriptional regulator of anaerobic metabolism, FNR family |
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Bacillus cereus ATCC 14579 Site: position = -192 score = 4.75445 sequence = TGTGACTTTTCTCACA Gene: BC2122: Transcriptional regulator of anaerobic metabolism, FNR family |
Gene: BH0231: Transcriptional regulator of anaerobic metabolism, FNR family |
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Gene: Pjdr2_5250: Transcriptional regulator of anaerobic metabolism, FNR family |
Transcriptional regulator of anaerobic metabolism, FNR family |
| ywiC |
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Bacillus licheniformis DSM 13 Site: position = -92 score = 5.7408 sequence = AGTGATTTAATTCACA Gene: BLi02079: Putative integral inner membrane protein |
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Putative integral inner membrane protein |
| CRON 6. | ||||||||||||
| arfM |
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Bacillus subtilis subsp. subtilis str. 168 Site: position = -73 score = 5.61274 sequence = TGTGAAATACATCACT Gene: BSU37290: Anaerobic respiration and fermentation modulator |
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Bacillus amyloliquefaciens FZB42 Site: position = -73 score = 5.61274 sequence = TGTGAAATACATCACT Gene: RBAM_034440: Anaerobic respiration and fermentation modulator |
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Bacillus licheniformis DSM 13 Site: position = -73 score = 5.7408 sequence = TGTGAATTAAATCACT Gene: BLi02078: Anaerobic respiration and fermentation modulator |
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Bacillus halodurans C-125 Site: position = -74 score = 4.80122 sequence = TGTGAACCATGTCACT Gene: BH0229: Anaerobic respiration and fermentation modulator |
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Anaerobic respiration and fermentation modulator |
| CRON 7. | ||||||||||||
| adh |
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Bacillus licheniformis DSM 13 Site: position = -90 score = 5.33275 sequence = TGTGAAATGTTTCACA Gene: BLi04290: NAD-dependent aldehyde dehydrogenase domain and Fe-dependent alcohol dehydrogense domain |
Gene: Aflv_2814: NAD-dependent aldehyde dehydrogenase domain and Fe-dependent alcohol dehydrogense domain |
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Bacillus cereus ATCC 14579 Site: position = -212 score = 5.33275 sequence = TGTGAAACATTTCACA Site: position = -127 score = 5.33275 sequence = TGTGAAAAATTTCACA Gene: BC4365: NAD-dependent aldehyde dehydrogenase domain and Fe-dependent alcohol dehydrogense domain |
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NAD-dependent aldehyde dehydrogenase domain and Fe-dependent alcohol dehydrogense domain |
| CRON 8. | ||||||||||||
| ldh |
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Bacillus subtilis subsp. subtilis str. 168 Site: position = -60 score = 6.02949 sequence = TGTGAAATACTTCACA Site: position = -83 score = 4.73444 sequence = TGTGAAGTGTTGCACA Gene: BSU03050: L-lactate dehydrogenase (EC 1.1.1.27) |
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Bacillus amyloliquefaciens FZB42 Site: position = -57 score = 6.02949 sequence = TGTGAAATACTTCACA Site: position = -80 score = 5.38196 sequence = TGTGAAGTATTGCACA Gene: RBAM_003290: L-lactate dehydrogenase (EC 1.1.1.27) |
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Bacillus pumilus SAFR-032 Site: position = -54 score = 6.02949 sequence = TGTGAAATACTTCACA Site: position = -77 score = 5.38196 sequence = TGTGAAGTATTGCACA Gene: BPUM_0277: L-lactate dehydrogenase (EC 1.1.1.27) |
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Bacillus licheniformis DSM 13 Site: position = -57 score = 5.38196 sequence = TGTGAAGAATTTCACA Site: position = -80 score = 5.38196 sequence = TGTGAAGTATTGCACA Gene: BLi00366: L-lactate dehydrogenase (EC 1.1.1.27) |
Gene: Aflv_0889: L-lactate dehydrogenase (EC 1.1.1.27) |
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Geobacillus kaustophilus HTA426 Site: position = -40 score = 4.8625 sequence = TGTGAATATATTCACA Gene: GK0475: L-lactate dehydrogenase (EC 1.1.1.27) |
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Bacillus halodurans C-125 Site: position = -42 score = 4.77386 sequence = TGTGAAAATATTCACA Site: position = -217 score = 5.98027 sequence = TGTGAAATATTTCACA Site: position = -274 score = 5.98027 sequence = TGTGAAATATTTCACA Gene: BH3937: L-lactate dehydrogenase (EC 1.1.1.27) |
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Bacillus clausii KSM-K16 Site: position = -66 score = 5.42139 sequence = TGTGAAATAATGCACA Site: position = -43 score = 5.42139 sequence = TGTGAATAATTTCACA Gene: ABC2872: L-lactate dehydrogenase (EC 1.1.1.27) |
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Oceanobacillus iheyensis HTE831 Site: position = -66 score = 5.98027 sequence = TGTGAAATATTTCACA Gene: OB3279: L-lactate dehydrogenase (EC 1.1.1.27) |
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L-lactate dehydrogenase (EC 1.1.1.27) |
| lctP |
Gene: BSU03060: L-lactate permease |
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Gene: BPUM_0278: L-lactate permease |
Gene: BLi00367: L-lactate permease |
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Gene: BH3936: L-lactate permease |
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L-lactate permease |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |