Regulog ExuR - Bacillales
| Regulator type: | Transcription factor |
| Regulator family: | LacI |
| Regulation mode: | repressor |
| Biological process: | Glucuronate utilization; Galacturonate utilization |
| Effector: | Glucuronate; Galacturonate |
| Phylum: | Firmicutes |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Bacillales
- By TF family - LacI
- By effector - Glucuronate
- By effector - Galacturonate
- By pathway - Glucuronate utilization
- By pathway - Galacturonate utilization
| Genome | Genes | Operons |
|---|---|---|
| Bacillus subtilis subsp. subtilis str. 168 | 10 | 1 |
| Bacillus amyloliquefaciens FZB42 | 5 | 1 |
| Bacillus pumilus SAFR-032 | 4 | 1 |
| Bacillus licheniformis DSM 13 | 5 | 1 |
| Anoxybacillus flavithermus WK1 | ||
| Geobacillus kaustophilus HTA426 | ||
| Bacillus cereus ATCC 14579 | ||
| Bacillus halodurans C-125 | ||
| Bacillus clausii KSM-K16 | ||
| Oceanobacillus iheyensis HTE831 | ||
| Paenibacillus sp. JDR-2 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| uxaC |
*
Bacillus subtilis subsp. subtilis str. 168 Site: position = -45 score = 6.50826 sequence = ATGTTAACGTTAACAT Gene: BSU12300: Uronate isomerase (EC 5.3.1.12) |
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Bacillus amyloliquefaciens FZB42 Site: position = -38 score = 6.50826 sequence = TTGTTAACGTTAACAT Gene: RBAM_012380: Uronate isomerase (EC 5.3.1.12) |
*
Bacillus pumilus SAFR-032 Site: position = -52 score = 6.18193 sequence = TTGTTAACGTGAACAA Gene: BPUM_2987: Uronate isomerase (EC 5.3.1.12) |
*
Bacillus licheniformis DSM 13 Site: position = -43 score = 6.50826 sequence = TTGTTAACGTTAACAT Site: position = -75 score = 5.91759 sequence = ATGTTAACGTTCACAT Gene: BLi03516: Uronate isomerase (EC 5.3.1.12) |
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Gene: BH0705: Uronate isomerase (EC 5.3.1.12) |
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Gene: OB0367: Uronate isomerase (EC 5.3.1.12) |
Gene: Pjdr2_2923: Uronate isomerase (EC 5.3.1.12) |
Uronate isomerase (EC 5.3.1.12) |
| exuM |
Gene: BSU12310: Putative Na+:altronate/mannonate symporter |
Gene: RBAM_012390: Putative Na+:altronate/mannonate symporter |
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Gene: BLi03515: Putative Na+:altronate/mannonate symporter |
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Putative Na+:altronate/mannonate symporter |
| yjmC |
Gene: BSU12320: Ureidoglycolate dehydrogenase |
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Gene: ABC4048: Ureidoglycolate dehydrogenase |
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Ureidoglycolate dehydrogenase |
| yjmD |
Gene: BSU12330: Predicted mannuronate reductase (EC 1.1.1.131) |
Gene: RBAM_017960: Predicted mannuronate reductase (EC 1.1.1.131) |
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Gene: BLi01358: Predicted mannuronate reductase (EC 1.1.1.131) |
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Gene: ABC0630: Predicted mannuronate reductase (EC 1.1.1.131) |
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Predicted mannuronate reductase (EC 1.1.1.131) |
| uxuA |
Gene: BSU12340: Mannonate dehydratase (EC 4.2.1.8) |
Gene: RBAM_017980: Mannonate dehydratase (EC 4.2.1.8) |
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Gene: BLi01356: Mannonate dehydratase (EC 4.2.1.8) |
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Gene: BH1063: Mannonate dehydratase (EC 4.2.1.8) |
Gene: ABC0631: Mannonate dehydratase (EC 4.2.1.8) |
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Gene: Pjdr2_0333: Mannonate dehydratase (EC 4.2.1.8) |
Mannonate dehydratase (EC 4.2.1.8) |
| uxuB |
Gene: BSU12350: D-mannonate oxidoreductase (EC 1.1.1.57) |
Gene: RBAM_017990: D-mannonate oxidoreductase (EC 1.1.1.57) |
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Gene: BLi01357: D-mannonate oxidoreductase (EC 1.1.1.57) |
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Gene: BH1067: D-mannonate oxidoreductase (EC 1.1.1.57) |
Gene: ABC0632: D-mannonate oxidoreductase (EC 1.1.1.57) |
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Gene: Pjdr2_0334: D-mannonate oxidoreductase (EC 1.1.1.57) |
D-mannonate oxidoreductase (EC 1.1.1.57) |
| exuT |
Gene: BSU12360: Hexuronate transporter |
Gene: RBAM_018010: Hexuronate transporter |
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Gene: BLi01359: Hexuronate transporter |
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Hexuronate transporter |
| exuR |
Gene: BSU12370: Transcriptional regulator of hexuronate utilization, LacI family |
Gene: RBAM_012400: Transcriptional regulator of hexuronate utilization, LacI family |
Gene: BPUM_2986: Transcriptional regulator of hexuronate utilization, LacI family |
Gene: BLi03514: Transcriptional regulator of hexuronate utilization, LacI family |
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Transcriptional regulator of hexuronate utilization, LacI family |
| uxaB |
Gene: BSU12380: Altronate oxidoreductase (EC 1.1.1.58) |
Gene: RBAM_012410: Altronate oxidoreductase (EC 1.1.1.58) |
Gene: BPUM_2985: Altronate oxidoreductase (EC 1.1.1.58) |
Gene: BLi03513: Altronate oxidoreductase (EC 1.1.1.58) |
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Gene: Pjdr2_2924: Altronate oxidoreductase (EC 1.1.1.58) |
Altronate oxidoreductase (EC 1.1.1.58) |
| uxaA |
Gene: BSU12390: Altronate hydrolase (EC 4.2.1.7) |
Gene: RBAM_012420: Altronate hydrolase (EC 4.2.1.7) |
Gene: BPUM_2984: Altronate hydrolase (EC 4.2.1.7) |
Gene: BLi03512: Altronate hydrolase (EC 4.2.1.7) |
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Gene: BH0490: Altronate hydrolase (EC 4.2.1.7) |
2
Bacillus clausii KSM-K16 Gene: ABC0442: Altronate hydrolase (EC 4.2.1.7) Gene: ABC1153: Altronate hydrolase (EC 4.2.1.7) |
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Gene: Pjdr2_2925: Altronate hydrolase (EC 4.2.1.7) |
Altronate hydrolase (EC 4.2.1.7) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |