Regulog TreR - Various betaproteobacteria

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/Others
Regulation mode:	repressor
Biological process:	Trehalose utilization
Effector:	Trehalose
Phylum:	Proteobacteria/Beta
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

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Member of regulog collections

By taxonomy - Various betaproteobacteria
By TF family - GntR/Others
By effector - Trehalose
By pathway - Trehalose utilization

Statistics of regulated genes
Genome	Genes	Operons
Methylobacillus flagellatus KT
Methylotenera mobilis JLW8
Methylophilales bacterium HTCC2181
Nitrosospira multiformis ATCC 25196
Nitrosomonas europaea ATCC 19718
Thiobacillus denitrificans
Azoarcus sp. EbN1
Dechloromonas aromatica RCB
Thauera sp. MZ1T
Chromobacterium violaceum ATCC 12472	3	1
Laribacter hongkongensis HLHK9
Neisseria meningitidis MC58

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes													Function

CRON 1.
treP	Methylobacillus flagellatus KT	Methylotenera mobilis JLW8	Methylophilales bacterium HTCC2181	Nitrosospira multiformis ATCC 25196	Nitrosomonas europaea ATCC 19718	Thiobacillus denitrificans	Azoarcus sp. EbN1	Dechloromonas aromatica RCB	Thauera sp. MZ1T	* Chromobacterium violaceum ATCC 12472 Site: position = -146 score = 4.70552 sequence = AACTCGTACAGACGAGTG Site: position = -122 score = 6.48772 sequence = AACTTGTATGTACAAGTT Gene: CV3300: PTS system, trehalose-specific IIB component (EC 2.7.1.69) / PTS system, trehalose-specific IIC component (EC 2.7.1.69)	Laribacter hongkongensis HLHK9	Neisseria meningitidis MC58	PTS system, trehalose-specific IIB component (EC 2.7.1.69) / PTS system, trehalose-specific IIC component (EC 2.7.1.69)
treA	Methylobacillus flagellatus KT	Methylotenera mobilis JLW8	Methylophilales bacterium HTCC2181	Nitrosospira multiformis ATCC 25196	Nitrosomonas europaea ATCC 19718	Thiobacillus denitrificans	Azoarcus sp. EbN1	Dechloromonas aromatica RCB	Thauera sp. MZ1T	Chromobacterium violaceum ATCC 12472 Gene: CV3299: Trehalose-6-phosphate hydrolase (EC 3.2.1.93)	Laribacter hongkongensis HLHK9	Neisseria meningitidis MC58	Trehalose-6-phosphate hydrolase (EC 3.2.1.93)
lamB	Methylobacillus flagellatus KT	Methylotenera mobilis JLW8	Methylophilales bacterium HTCC2181	Nitrosospira multiformis ATCC 25196	Nitrosomonas europaea ATCC 19718	Thiobacillus denitrificans	Azoarcus sp. EbN1	Dechloromonas aromatica RCB	Thauera sp. MZ1T	Chromobacterium violaceum ATCC 12472 Gene: CV3298: Predicted trehalose-specific porin	Laribacter hongkongensis HLHK9	Neisseria meningitidis MC58	Predicted trehalose-specific porin

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog TreR - Various betaproteobacteria

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --