Regulog NreC - Staphylococcaceae
| Regulator type: | Transcription factor |
| Regulator family: | OmpR |
| Regulation mode: | activator |
| Biological process: | Nitrate and nitrite respiration |
| Effector: | NreB, sensor histidine kinase (Nitrate, Nitrite) |
| Phylum: | Firmicutes |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Staphylococcaceae
- By TF family - OmpR
- By effector - NreB, sensor histidine kinase (Nitrate, Nitrite)
- By pathway - Nitrate and nitrite respiration
| Genome | Genes | Operons |
|---|---|---|
| Staphylococcus aureus subsp. aureus N315 | 12 | 3 |
| Staphylococcus capitis SK14 | 12 | 3 |
| Staphylococcus epidermidis ATCC 12228 | 11 | 3 |
| Staphylococcus carnosus subsp. carnosus TM300 | 13 | 3 |
| Staphylococcus haemolyticus JCSC1435 | 11 | 3 |
| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 | ||
| Macrococcus caseolyticus JCSC5402 | 12 | 2 |
| Genes | Function | |||||||
|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||
| nirR |
*
Staphylococcus aureus subsp. aureus N315 Site: position = -93 score = 5.83193 sequence = ATCAGGGAATTCCCTGAT Gene: SA2189: conserved protein, iron chelatase like |
*
Staphylococcus capitis SK14 Site: position = -93 score = 5.64878 sequence = ATAAGGGTATTCCCTACT Gene: STACA0001_1076: conserved protein, iron chelatase like |
Gene: SE1979: conserved protein, iron chelatase like |
*
Staphylococcus carnosus subsp. carnosus TM300 Site: position = -93 score = 5.80229 sequence = ATAAGGGGATTCCCTATT Gene: Sca_1899: conserved protein, iron chelatase like |
Gene: SH0650: conserved protein, iron chelatase like |
|
*
Macrococcus caseolyticus JCSC5402 Site: position = -118 score = 5.45977 sequence = TATAGGGAAATCCCTATT Gene: MCCL_1342: conserved protein, iron chelatase like |
conserved protein, iron chelatase like |
| sirA |
|
|
|
Gene: Sca_1898: syroheme synthase |
|
|
Gene: MCCL_1341: syroheme synthase |
syroheme synthase |
| nasD |
Gene: SA2188: assimilatory nitrite reductase, large subunit |
Gene: STACA0001_1077: assimilatory nitrite reductase, large subunit |
*
Staphylococcus epidermidis ATCC 12228 Site: position = -174 score = 5.76723 sequence = ATTAGGGAAATCCCCGAT Gene: SE1978: assimilatory nitrite reductase, large subunit |
Gene: Sca_1897: assimilatory nitrite reductase, large subunit |
*
Staphylococcus haemolyticus JCSC1435 Site: position = -170 score = 5.83775 sequence = ATTAGGGAATTCCCCGAT Gene: SH0651: assimilatory nitrite reductase, large subunit |
|
Gene: MCCL_1340: assimilatory nitrite reductase, large subunit |
assimilatory nitrite reductase, large subunit |
| nasE |
Gene: SA2187: assimilatory nitrite reductase, small subunit |
Gene: STACA0001_1078: assimilatory nitrite reductase, small subunit |
Gene: SE1977: assimilatory nitrite reductase, small subunit |
Gene: Sca_1896: assimilatory nitrite reductase, small subunit |
Gene: SH0652: assimilatory nitrite reductase, small subunit |
|
Gene: MCCL_1339: assimilatory nitrite reductase, small subunit |
assimilatory nitrite reductase, small subunit |
| nasF |
Gene: SA2186: uroporphyrin-III C-methyl transferase |
Gene: STACA0001_1079: uroporphyrin-III C-methyltransferase |
Gene: SE1976: uroporphyrin-III C-methyltransferase |
Gene: Sca_1895: uroporphyrin-III C-methyltransferase |
Gene: SH0653: uroporphyrin-III C-methyl transferase |
|
Gene: MCCL_1338: uroporphyrin-III C-methyltransferase |
uroporphyrin-III C-methyl transferase |
| CRON 2. | ||||||||
| narK |
*
Staphylococcus aureus subsp. aureus N315 Site: position = -184 score = 5.61912 sequence = ATAAGGGAAAATCCTTAT Gene: SA2176: nitrate-nitrite antiporter |
*
Staphylococcus capitis SK14 Site: position = -172 score = 5.21942 sequence = TTAAGGGTAAATCCTTAT Gene: STACA0001_1087: nitrate-nitrite antiporter |
*
Staphylococcus epidermidis ATCC 12228 Site: position = -165 score = 5.0428 sequence = ATCAGGGTATGTCCTTAT Gene: SE1968: nitrate-nitrite antiporter |
*
Staphylococcus carnosus subsp. carnosus TM300 Site: position = -157 score = 5.5274 sequence = TTAAGGGAAAGCCCTTAT Gene: Sca_1887: nitrate-nitrite antiporter |
*
Staphylococcus haemolyticus JCSC1435 Site: position = -141 score = 5.68964 sequence = ATAAGGGAATATCCTTAT Gene: SH0661: nitrate-nitrite antiporter |
|
Gene: MCCL_0144: nitrate-nitrite antiporter |
nitrate-nitrite antiporter |
| CRON 3. | ||||||||
| narG |
*
Staphylococcus aureus subsp. aureus N315 Site: position = -134 score = 5.88461 sequence = ATTAGGTGATTCCCTAAT Gene: SA2185: respiratory nitrate reductase alpha chain |
*
Staphylococcus capitis SK14 Site: position = -116 score = 5.63157 sequence = ATTAGGTATTTCCCTAAT Gene: STACA0001_1080: respiratory nitrate reductase alpha chain |
*
Staphylococcus epidermidis ATCC 12228 Site: position = -113 score = 5.88461 sequence = ATTAGGACATTCCCTAAT Gene: SE1975: respiratory nitrate reductase alpha chain |
*
Staphylococcus carnosus subsp. carnosus TM300 Site: position = -123 score = 5.38968 sequence = TATAGGAGAATCCCTAAT Gene: Sca_1894: respiratory nitrate reductase alpha chain |
*
Staphylococcus haemolyticus JCSC1435 Site: position = -118 score = 5.88461 sequence = ATTAGGACATTCCCTAAT Gene: SH0654: respiratory nitrate reductase alpha chain |
|
*
Macrococcus caseolyticus JCSC5402 Site: position = -85 score = 5.39872 sequence = TTTAGGACATTCCCCAAT Gene: MCCL_0136: respiratory nitrate reductase alpha chain |
respiratory nitrate reductase alpha chain |
| narH |
Gene: SA2184: respiratory nitrate reductase beta chain |
Gene: STACA0001_1081: respiratory nitrate reductase beta chain |
Gene: SE1974: respiratory nitrate reductase beta chain |
Gene: Sca_1893: respiratory nitrate reductase beta chain |
Gene: SH0655: respiratory nitrate reductase beta chain |
|
Gene: MCCL_0137: respiratory nitrate reductase beta chain |
respiratory nitrate reductase beta chain |
| narJ |
Gene: SA2183: respiratory nitrate reductase molybdenum cofactor assembly chaperone |
Gene: STACA0001_1082: respiratory nitrate reductase molybdenum cofactor assembly chaperone |
Gene: SE1973: respiratory nitrate reductase molybdenum cofactor assembly chaperone |
Gene: Sca_1892: respiratory nitrate reductase molybdenum cofactor assembly chaperone |
Gene: SH0656: respiratory nitrate reductase molybdenum cofactor assembly chaperone |
|
Gene: MCCL_0138: respiratory nitrate reductase molybdenum cofactor assembly chaperone |
respiratory nitrate reductase molybdenum cofactor assembly chaperone |
| narI |
Gene: SA2182: respiratory nitrate reductase gamma chain |
Gene: STACA0001_1083: respiratory nitrate reductase gamma chain |
Gene: SE1972: respiratory nitrate reductase gamma chain |
Gene: Sca_1891: respiratory nitrate reductase gamma chain |
Gene: SH0657: respiratory nitrate reductase gamma chain |
|
Gene: MCCL_0139: respiratory nitrate reductase gamma chain |
respiratory nitrate reductase gamma chain |
| nreA |
Gene: SA2181: nitrate reduction control protein, certain function is unclear |
Gene: STACA0001_1084: nitrate reduction control protein, certain function is unclear |
Gene: SE1971: nitrate reduction control protein, certain function is unclear |
Gene: Sca_1890: nitrate reduction control protein, certain function is unclear |
Gene: SH0658: nitrate reduction control protein, certain function is unclear |
|
Gene: MCCL_0140: nitrate reduction control protein, certain function is unclear |
nitrate reduction control protein, certain function is unclear |
| nreB |
Gene: SA2180: nitrate respiration regulation two-component system, sensor histidine kinase |
Gene: STACA0001_1085: nitrate respiration regulation two-component system, sensor histidine kinase |
Gene: SE1970: nitrate respiration regulation two-component system, sensor histidine kinase |
Gene: Sca_1889: nitrate respiration regulation two-component system, sensor histidine kinase |
Gene: SH0659: nitrate respiration regulation two-component system, sensor histidine kinase |
|
Gene: MCCL_0141: nitrate respiration regulation two-component system, sensor histidine kinase |
nitrate respiration regulation two-component system, sensor histidine kinase |
| nreC |
Gene: SA2179: nitrate respiration regulation two-component system, response regulator |
Gene: STACA0001_1086: nitrate respiration regulation two-component system, response regulator |
Gene: SE1969: nitrate respiration regulation two-component system, response regulator |
Gene: Sca_1888: nitrate respiration regulation two-component system, response regulator |
Gene: SH0660: nitrate respiration regulation two-component system, response regulator |
|
Gene: MCCL_0142: nitrate respiration regulation two-component system, response regulator |
nitrate respiration regulation two-component system, response regulator |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |