Regulog MalR4 - Bifidobacteriaceae
| Regulator type: | Transcription factor |
| Regulator family: | LacI |
| Regulation mode: | repressor |
| Biological process: | Maltose utilization; Maltodextrin utilization |
| Effector: | Maltose |
| Phylum: | Actinobacteria |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Bifidobacteriaceae
- By TF family - LacI
- By effector - Maltose
- By pathway - Maltose utilization
- By pathway - Maltodextrin utilization
| Genome | Genes | Operons |
|---|---|---|
| Bifidobacterium adolescentis ATCC 15703 | ||
| Bifidobacterium angulatum DSM 20098 | ||
| Bifidobacterium animalis subsp. lactis AD011 | ||
| Bifidobacterium bifidum NCIMB 41171 | ||
| Bifidobacterium breve DSM 20213 | ||
| Bifidobacterium dentium Bd1 | 5 | 2 |
| Bifidobacterium gallicum DSM 20093 | ||
| Bifidobacterium longum NCC2705 | 2 | 2 |
| Bifidobacterium longum subsp. infantis ATCC 15697 | ||
| Gardnerella vaginalis 409-05 | 5 | 2 |
| Genes | Function | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||
| malE3 |
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Bifidobacterium dentium Bd1 Site: position = -39 score = 5.74097 sequence = ATGAAACCGGTTACAT Site: position = -55 score = 5.25092 sequence = ATGAAAAGGGTTTCAA Site: position = -118 score = 5.15253 sequence = ATGAAAAGGGTTTCAG Gene: BDP_2185: Maltose/maltodextrin ABC transporter, substrate-binding pro |
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Gardnerella vaginalis 409-05 Site: position = -180 score = 5.45026 sequence = ATGTAAAGGTTTACAT Site: position = -100 score = 5.40486 sequence = ATGAAAACCTTTACAT Gene: HMPREF0424_1291: Maltose/maltodextrin ABC transporter, substrate-binding pro |
Maltose/maltodextrin ABC transporter, substrate-binding pro |
| malF3 |
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Gene: BDP_2184: Maltose/maltodextrin ABC transporter, permease protein 1 |
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Gene: HMPREF0424_1290: Maltose/maltodextrin ABC transporter, permease protein 1 |
Maltose/maltodextrin ABC transporter, permease protein 1 |
| malG3 |
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Gene: BDP_2183: Maltose/maltodextrin ABC transporter, permease protein 2 |
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Bifidobacterium longum NCC2705 Site: position = -103 score = 5.54089 sequence = ATGTAACGGTTTGCAT Site: position = -119 score = 4.9973 sequence = ATGTAACAGGTTGCAA Gene: BL0524: Maltose/maltodextrin ABC transporter, permease protein 2 |
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Gene: HMPREF0424_1289: Maltose/maltodextrin ABC transporter, permease protein 2 |
Maltose/maltodextrin ABC transporter, permease protein 2 |
| aglL |
Gene: BAD_1599: Maltodextrin glucosidase (EC 3.2.1.20) |
Gene: BIFANG_01209: Maltodextrin glucosidase (EC 3.2.1.20) |
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Gene: BDP_2182: Maltodextrin glucosidase (EC 3.2.1.20) |
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2
Bifidobacterium longum NCC2705 Gene: BL0523: Maltodextrin glucosidase (EC 3.2.1.20) Gene: BL1334: Maltodextrin glucosidase (EC 3.2.1.20) |
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Gene: HMPREF0424_1288: Maltodextrin glucosidase (EC 3.2.1.20) |
Maltodextrin glucosidase (EC 3.2.1.20) |
| CRON 2. | |||||||||||
| malR4 |
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Bifidobacterium dentium Bd1 Site: position = -158 score = 5.25092 sequence = TTGAAACCCTTTTCAT Site: position = -174 score = 5.74097 sequence = ATGTAACCGGTTTCAT Site: position = -95 score = 5.15253 sequence = CTGAAACCCTTTTCAT Gene: BDP_2186: Transcriptional regulator of maltose/maltodextrin utilization, LacI family |
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Bifidobacterium longum NCC2705 Site: position = -166 score = 4.9973 sequence = TTGCAACCTGTTACAT Site: position = -182 score = 5.54089 sequence = ATGCAAACCGTTACAT Gene: BL0525: Transcriptional regulator of maltose/maltodextrin utilization, LacI family |
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Gardnerella vaginalis 409-05 Site: position = -200 score = 5.40486 sequence = ATGTAAAGGTTTTCAT Site: position = -120 score = 5.45026 sequence = ATGTAAACCTTTACAT Gene: HMPREF0424_1292: Transcriptional regulator of maltose/maltodextrin utilization, LacI family |
Transcriptional regulator of maltose/maltodextrin utilization, LacI family |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |