Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog LtbR - Bifidobacteriaceae

Properties
Regulator type: Transcription factor
Regulator family: IclR
Regulation mode: repressor
Biological process: Leucine biosynthesis
Effector:
Phylum: Actinobacteria
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 19 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Bifidobacterium adolescentis ATCC 15703 3 2
Bifidobacterium angulatum DSM 20098 1 1
Bifidobacterium animalis subsp. lactis AD011 3 2
Bifidobacterium bifidum NCIMB 41171 3 2
Bifidobacterium breve DSM 20213 3 2
Bifidobacterium dentium Bd1 3 2
Bifidobacterium gallicum DSM 20093 4 2
Bifidobacterium longum NCC2705 3 2
Bifidobacterium longum subsp. infantis ATCC 15697 3 2
Gardnerella vaginalis 409-05
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
ltbR
*
Bifidobacterium adolescentis ATCC 15703

Site:
position = -33
score = 6.1372
sequence = CATTTCAATATGTGAGATG

Gene: BAD_0178: Leucine biosynthesis transcriptional regulator LtbR, IclR family
 
Bifidobacterium angulatum DSM 20098

Gene: BIFANG_00090: Leucine biosynthesis transcriptional regulator LtbR, IclR family
*
Bifidobacterium animalis subsp. lactis AD011

Site:
position = -32
score = 4.86119
sequence = CGTTTCGAATACTGAGATG

Site:
position = -168
score = 5.25637
sequence = TATGTCAGAATGCGAGATG

Gene: BLA_0228: Leucine biosynthesis transcriptional regulator LtbR, IclR family
*
Bifidobacterium bifidum NCIMB 41171

Site:
position = -67
score = 6.1372
sequence = CATTTCATTATGTGAGATG

Gene: BbifN4_010100000594: Leucine biosynthesis transcriptional regulator LtbR, IclR family
*
Bifidobacterium breve DSM 20213

Site:
position = -36
score = 6.1647
sequence = TATTTCACTATGTGAGATG

Gene: BIFBRE_00110: Leucine biosynthesis transcriptional regulator LtbR, IclR family
*
Bifidobacterium dentium Bd1

Site:
position = -33
score = 6.1372
sequence = CATTTCAATATGTGAGATG

Gene: BDP_0267: Leucine biosynthesis transcriptional regulator LtbR, IclR family
*
Bifidobacterium gallicum DSM 20093

Site:
position = -34
score = 6.1372
sequence = CATTTCATTATGTGAGATG

Gene: BIFGAL_00075: Leucine biosynthesis transcriptional regulator LtbR, IclR family
*
Bifidobacterium longum NCC2705

Site:
position = -60
score = 6.1647
sequence = TATTTCACTATGTGAGATG

Gene: BL1261: Leucine biosynthesis transcriptional regulator LtbR, IclR family
*
Bifidobacterium longum subsp. infantis ATCC 15697

Site:
position = -36
score = 6.37209
sequence = CATTTCACTATGTGAGATG

Gene: Blon_2326: Leucine biosynthesis transcriptional regulator LtbR, IclR family
 
Gardnerella vaginalis 409-05
Leucine biosynthesis transcriptional regulator LtbR, IclR family
 
CRON 2.
BIFGAL_00074
 
Bifidobacterium adolescentis ATCC 15703
 
Bifidobacterium angulatum DSM 20098
 
Bifidobacterium animalis subsp. lactis AD011
 
Bifidobacterium bifidum NCIMB 41171
 
Bifidobacterium breve DSM 20213
 
Bifidobacterium dentium Bd1
*
Bifidobacterium gallicum DSM 20093

Site:
position = -221
score = 6.1372
sequence = CATCTCACATAATGAAATG

Gene: BIFGAL_00074: hypothetical protein
 
Bifidobacterium longum NCC2705
 
Bifidobacterium longum subsp. infantis ATCC 15697
 
Gardnerella vaginalis 409-05
hypothetical protein
leuC
*
Bifidobacterium adolescentis ATCC 15703

Site:
position = -302
score = 6.1372
sequence = CATCTCACATATTGAAATG

Gene: BAD_0179: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)
*
Bifidobacterium angulatum DSM 20098

Site:
position = -168
score = 6.37209
sequence = CATCTCACATAGTGAAATG

Gene: BIFANG_00091: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)
*
Bifidobacterium animalis subsp. lactis AD011

Site:
position = -282
score = 4.86119
sequence = CATCTCAGTATTCGAAACG

Site:
position = -146
score = 5.25637
sequence = CATCTCGCATTCTGACATA

Gene: BLA_0229: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)
*
Bifidobacterium bifidum NCIMB 41171

Site:
position = -259
score = 6.1372
sequence = CATCTCACATAATGAAATG

Gene: BbifN4_010100000599: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)
*
Bifidobacterium breve DSM 20213

Site:
position = -178
score = 6.1647
sequence = CATCTCACATAGTGAAATA

Gene: BIFBRE_00111: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)
*
Bifidobacterium dentium Bd1

Site:
position = -270
score = 6.1372
sequence = CATCTCACATATTGAAATG

Gene: BDP_0268: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)
 
Bifidobacterium gallicum DSM 20093

Gene: BIFGAL_00073: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)
*
Bifidobacterium longum NCC2705

Site:
position = -276
score = 6.1647
sequence = CATCTCACATAGTGAAATA

Gene: BL1262: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)
*
Bifidobacterium longum subsp. infantis ATCC 15697

Site:
position = -276
score = 6.37209
sequence = CATCTCACATAGTGAAATG

Gene: Blon_2325: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)
 
Gardnerella vaginalis 409-05
3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)
leuD
 
Bifidobacterium adolescentis ATCC 15703

Gene: BAD_0180: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)
 
Bifidobacterium angulatum DSM 20098

Gene: BIFANG_00089: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)
 
Bifidobacterium animalis subsp. lactis AD011

Gene: BLA_0230: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)
 
Bifidobacterium bifidum NCIMB 41171

Gene: BbifN4_010100000604: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)
 
Bifidobacterium breve DSM 20213

Gene: BIFBRE_00112: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)
 
Bifidobacterium dentium Bd1

Gene: BDP_0269: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)
 
Bifidobacterium gallicum DSM 20093

Gene: BIFGAL_00072: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)
 
Bifidobacterium longum NCC2705

Gene: BL1263: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)
 
Bifidobacterium longum subsp. infantis ATCC 15697

Gene: Blon_2324: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)
 
Gardnerella vaginalis 409-05
3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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