Regulog LtbR - Bifidobacteriaceae
| Regulator type: | Transcription factor |
| Regulator family: | IclR |
| Regulation mode: | repressor |
| Biological process: | Leucine biosynthesis |
| Effector: | |
| Phylum: | Actinobacteria |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Bifidobacteriaceae
- By trascription factor - LtbR
- By TF family - IclR
- By pathway - Leucine biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Bifidobacterium adolescentis ATCC 15703 | 3 | 2 |
| Bifidobacterium angulatum DSM 20098 | 1 | 1 |
| Bifidobacterium animalis subsp. lactis AD011 | 3 | 2 |
| Bifidobacterium bifidum NCIMB 41171 | 3 | 2 |
| Bifidobacterium breve DSM 20213 | 3 | 2 |
| Bifidobacterium dentium Bd1 | 3 | 2 |
| Bifidobacterium gallicum DSM 20093 | 4 | 2 |
| Bifidobacterium longum NCC2705 | 3 | 2 |
| Bifidobacterium longum subsp. infantis ATCC 15697 | 3 | 2 |
| Gardnerella vaginalis 409-05 |
| Genes | Function | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||
| ltbR |
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Bifidobacterium adolescentis ATCC 15703 Site: position = -33 score = 6.1372 sequence = CATTTCAATATGTGAGATG Gene: BAD_0178: Leucine biosynthesis transcriptional regulator LtbR, IclR family |
Gene: BIFANG_00090: Leucine biosynthesis transcriptional regulator LtbR, IclR family |
*
Bifidobacterium animalis subsp. lactis AD011 Site: position = -32 score = 4.86119 sequence = CGTTTCGAATACTGAGATG Site: position = -168 score = 5.25637 sequence = TATGTCAGAATGCGAGATG Gene: BLA_0228: Leucine biosynthesis transcriptional regulator LtbR, IclR family |
*
Bifidobacterium bifidum NCIMB 41171 Site: position = -67 score = 6.1372 sequence = CATTTCATTATGTGAGATG Gene: BbifN4_010100000594: Leucine biosynthesis transcriptional regulator LtbR, IclR family |
*
Bifidobacterium breve DSM 20213 Site: position = -36 score = 6.1647 sequence = TATTTCACTATGTGAGATG Gene: BIFBRE_00110: Leucine biosynthesis transcriptional regulator LtbR, IclR family |
*
Bifidobacterium dentium Bd1 Site: position = -33 score = 6.1372 sequence = CATTTCAATATGTGAGATG Gene: BDP_0267: Leucine biosynthesis transcriptional regulator LtbR, IclR family |
*
Bifidobacterium gallicum DSM 20093 Site: position = -34 score = 6.1372 sequence = CATTTCATTATGTGAGATG Gene: BIFGAL_00075: Leucine biosynthesis transcriptional regulator LtbR, IclR family |
*
Bifidobacterium longum NCC2705 Site: position = -60 score = 6.1647 sequence = TATTTCACTATGTGAGATG Gene: BL1261: Leucine biosynthesis transcriptional regulator LtbR, IclR family |
*
Bifidobacterium longum subsp. infantis ATCC 15697 Site: position = -36 score = 6.37209 sequence = CATTTCACTATGTGAGATG Gene: Blon_2326: Leucine biosynthesis transcriptional regulator LtbR, IclR family |
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Leucine biosynthesis transcriptional regulator LtbR, IclR family |
| CRON 2. | |||||||||||
| BIFGAL_00074 |
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*
Bifidobacterium gallicum DSM 20093 Site: position = -221 score = 6.1372 sequence = CATCTCACATAATGAAATG Gene: BIFGAL_00074: hypothetical protein |
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hypothetical protein |
| leuC |
*
Bifidobacterium adolescentis ATCC 15703 Site: position = -302 score = 6.1372 sequence = CATCTCACATATTGAAATG Gene: BAD_0179: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) |
*
Bifidobacterium angulatum DSM 20098 Site: position = -168 score = 6.37209 sequence = CATCTCACATAGTGAAATG Gene: BIFANG_00091: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) |
*
Bifidobacterium animalis subsp. lactis AD011 Site: position = -282 score = 4.86119 sequence = CATCTCAGTATTCGAAACG Site: position = -146 score = 5.25637 sequence = CATCTCGCATTCTGACATA Gene: BLA_0229: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) |
*
Bifidobacterium bifidum NCIMB 41171 Site: position = -259 score = 6.1372 sequence = CATCTCACATAATGAAATG Gene: BbifN4_010100000599: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) |
*
Bifidobacterium breve DSM 20213 Site: position = -178 score = 6.1647 sequence = CATCTCACATAGTGAAATA Gene: BIFBRE_00111: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) |
*
Bifidobacterium dentium Bd1 Site: position = -270 score = 6.1372 sequence = CATCTCACATATTGAAATG Gene: BDP_0268: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) |
Gene: BIFGAL_00073: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) |
*
Bifidobacterium longum NCC2705 Site: position = -276 score = 6.1647 sequence = CATCTCACATAGTGAAATA Gene: BL1262: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) |
*
Bifidobacterium longum subsp. infantis ATCC 15697 Site: position = -276 score = 6.37209 sequence = CATCTCACATAGTGAAATG Gene: Blon_2325: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) |
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3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) |
| leuD |
Gene: BAD_0180: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) |
Gene: BIFANG_00089: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) |
Gene: BLA_0230: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) |
Gene: BbifN4_010100000604: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) |
Gene: BIFBRE_00112: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) |
Gene: BDP_0269: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) |
Gene: BIFGAL_00072: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) |
Gene: BL1263: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) |
Gene: Blon_2324: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) |
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3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |