Regulog CsoR - Bifidobacteriaceae
| Regulator type: | Transcription factor |
| Regulator family: | CsoR |
| Regulation mode: | |
| Biological process: | Copper homeostasis |
| Effector: | Copper ion, (Cu+) |
| Phylum: | Actinobacteria |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - CsoR
- By taxonomy - Bifidobacteriaceae
- By TF family - CsoR
- By effector - Copper ion, (Cu+)
- By pathway - Copper homeostasis
| Genome | Genes | Operons |
|---|---|---|
| Bifidobacterium adolescentis ATCC 15703 | 2 | 2 |
| Bifidobacterium angulatum DSM 20098 | ||
| Bifidobacterium animalis subsp. lactis AD011 | ||
| Bifidobacterium bifidum NCIMB 41171 | 2 | 2 |
| Bifidobacterium breve DSM 20213 | 2 | 2 |
| Bifidobacterium dentium Bd1 | 2 | 2 |
| Bifidobacterium gallicum DSM 20093 | ||
| Bifidobacterium longum NCC2705 | 2 | 2 |
| Bifidobacterium longum subsp. infantis ATCC 15697 | 2 | 2 |
| Gardnerella vaginalis 409-05 |
| Genes | Function | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||
| copA |
*
Bifidobacterium adolescentis ATCC 15703 Site: position = -23 score = 6.24692 sequence = ATACCCTATAGGGGTAT Gene: BAD_1301: Copper-translocating P-type ATPase (EC 3.6.3.4) |
Gene: BIFANG_00319: Copper-translocating P-type ATPase (EC 3.6.3.4) |
Gene: BLA_1002: Copper-translocating P-type ATPase (EC 3.6.3.4) |
*
Bifidobacterium bifidum NCIMB 41171 Site: position = -67 score = 6.18247 sequence = ATACCCTCTAGGGGTAT Gene: BbifN4_010100007157: Copper-translocating P-type ATPase (EC 3.6.3.4) |
*
Bifidobacterium breve DSM 20213 Site: position = -64 score = 6.31708 sequence = ATACCCCATAGGGGTAT Gene: BIFBRE_02065: Copper-translocating P-type ATPase (EC 3.6.3.4) |
*
Bifidobacterium dentium Bd1 Site: position = -73 score = 6.24692 sequence = ATACCCTATAGGGGTAT Gene: BDP_1759: Copper-translocating P-type ATPase (EC 3.6.3.4) |
Gene: BIFGAL_01253: Copper-translocating P-type ATPase (EC 3.6.3.4) |
*
Bifidobacterium longum NCC2705 Site: position = -65 score = 6.18247 sequence = ATACCCTCTAGGGGTAT Gene: BL0409: Copper-translocating P-type ATPase (EC 3.6.3.4) |
*
Bifidobacterium longum subsp. infantis ATCC 15697 Site: position = -64 score = 6.18247 sequence = ATACCCTCTAGGGGTAT Gene: Blon_0251: Copper-translocating P-type ATPase (EC 3.6.3.4) |
|
Copper-translocating P-type ATPase (EC 3.6.3.4) |
| CRON 2. | |||||||||||
| csoR |
*
Bifidobacterium adolescentis ATCC 15703 Site: position = -82 score = 6.24692 sequence = ATACCCCTATAGGGTAT Gene: BAD_1302: Copper resistance transcriptional regulator CsoR, CsoR family |
|
|
*
Bifidobacterium bifidum NCIMB 41171 Site: position = -36 score = 6.18247 sequence = ATACCCCTAGAGGGTAT Gene: BbifN4_010100007162: Copper resistance transcriptional regulator CsoR, CsoR family |
*
Bifidobacterium breve DSM 20213 Site: position = -8 score = 6.31708 sequence = ATACCCCTATGGGGTAT Gene: BIFBRE_02066: Copper resistance transcriptional regulator CsoR, CsoR family |
*
Bifidobacterium dentium Bd1 Site: position = -85 score = 6.24692 sequence = ATACCCCTATAGGGTAT Gene: BDP_1760: Copper resistance transcriptional regulator CsoR, CsoR family |
|
*
Bifidobacterium longum NCC2705 Site: position = -63 score = 6.18247 sequence = ATACCCCTAGAGGGTAT Gene: BL0408: Copper resistance transcriptional regulator CsoR, CsoR family |
*
Bifidobacterium longum subsp. infantis ATCC 15697 Site: position = -63 score = 6.18247 sequence = ATACCCCTAGAGGGTAT Gene: Blon_0252: Copper resistance transcriptional regulator CsoR, CsoR family |
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Copper resistance transcriptional regulator CsoR, CsoR family |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |