Regulog BgrT4 - Bifidobacteriaceae

Properties
Regulator type:	Transcription factor
Regulator family:	TetR
Regulation mode:
Biological process:	Beta-glucosides utilization
Effector:
Phylum:	Actinobacteria
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 8 sites [see more]

Member of regulog collections

By taxonomy - Bifidobacteriaceae
By TF family - TetR
By pathway - Beta-glucosides utilization

Statistics of regulated genes
Genome	Genes	Operons
Bifidobacterium adolescentis ATCC 15703	4	3
Bifidobacterium angulatum DSM 20098
Bifidobacterium animalis subsp. lactis AD011
Bifidobacterium bifidum NCIMB 41171
Bifidobacterium breve DSM 20213
Bifidobacterium dentium Bd1	6	4
Bifidobacterium gallicum DSM 20093
Bifidobacterium longum NCC2705
Bifidobacterium longum subsp. infantis ATCC 15697
Gardnerella vaginalis 409-05

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes											Function

CRON 1.
bglY	* Bifidobacterium adolescentis ATCC 15703 Site: position = -60 score = 4.48808 sequence = TCTAACTTAGTAATTACT Gene: BAD_1204: Glucan 1,3-beta-glucosidase precursor (EC 3.2.1.58)	Bifidobacterium angulatum DSM 20098	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213	* Bifidobacterium dentium Bd1 Site: position = -60 score = 6.01124 sequence = TTTAACTAAGTAGTTACT Gene: BDP_1678: Glucan 1,3-beta-glucosidase precursor (EC 3.2.1.58)	Bifidobacterium gallicum DSM 20093	Bifidobacterium longum NCC2705	Bifidobacterium longum subsp. infantis ATCC 15697	Gardnerella vaginalis 409-05	Glucan 1,3-beta-glucosidase precursor (EC 3.2.1.58)
xynB	Bifidobacterium adolescentis ATCC 15703 Gene: BAD_1203: Beta-xylosidase (EC 3.2.1.37)	Bifidobacterium angulatum DSM 20098	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213	Bifidobacterium dentium Bd1 Gene: BDP_1677: Beta-xylosidase (EC 3.2.1.37)	Bifidobacterium gallicum DSM 20093	Bifidobacterium longum NCC2705	Bifidobacterium longum subsp. infantis ATCC 15697	Gardnerella vaginalis 409-05	Beta-xylosidase (EC 3.2.1.37)

CRON 2.
bglX4	Bifidobacterium adolescentis ATCC 15703	Bifidobacterium angulatum DSM 20098	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213	* Bifidobacterium dentium Bd1 Site: position = -60 score = 5.65957 sequence = ATTAACTATGTAGTTAAT Site: position = -102 score = 6.00292 sequence = ATTAACTACGTAGTTAAT Gene: BDP_0208: Beta-glucosidase (EC 3.2.1.21)	Bifidobacterium gallicum DSM 20093	Bifidobacterium longum NCC2705	Bifidobacterium longum subsp. infantis ATCC 15697	Gardnerella vaginalis 409-05	Beta-glucosidase (EC 3.2.1.21)
bglT4	Bifidobacterium adolescentis ATCC 15703	Bifidobacterium angulatum DSM 20098	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213	Bifidobacterium dentium Bd1 Gene: BDP_0209: Predicted beta-glucoside permease, MFS family	Bifidobacterium gallicum DSM 20093	Bifidobacterium longum NCC2705	Bifidobacterium longum subsp. infantis ATCC 15697	Gardnerella vaginalis 409-05	Predicted beta-glucoside permease, MFS family

CRON 3.
bgrT4	* Bifidobacterium adolescentis ATCC 15703 Site: position = -125 score = 5.96223 sequence = AGTAACTGCTTAGTTAAA Gene: BAD_1210: Predicted beta-glucoside specific transcriptional regulator, TetR family	Bifidobacterium angulatum DSM 20098	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213	* Bifidobacterium dentium Bd1 Site: position = -123 score = 5.96223 sequence = AGTAACTGCTTAGTTAAA Gene: BDP_1682: Predicted beta-glucoside specific transcriptional regulator, TetR family	Bifidobacterium gallicum DSM 20093	Bifidobacterium longum NCC2705	Bifidobacterium longum subsp. infantis ATCC 15697	Gardnerella vaginalis 409-05	Predicted beta-glucoside specific transcriptional regulator, TetR family

CRON 4.
bglT	* Bifidobacterium adolescentis ATCC 15703 Site: position = -248 score = 5.96223 sequence = TTTAACTAAGCAGTTACT Gene: BAD_1209: Predicted beta-glucoside permease, MFS family	Bifidobacterium angulatum DSM 20098	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213	* Bifidobacterium dentium Bd1 Site: position = -221 score = 5.96223 sequence = TTTAACTAAGCAGTTACT Gene: BDP_1681: Predicted beta-glucoside permease, MFS family	Bifidobacterium gallicum DSM 20093	Bifidobacterium longum NCC2705	Bifidobacterium longum subsp. infantis ATCC 15697	Gardnerella vaginalis 409-05	Predicted beta-glucoside permease, MFS family

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog BgrT4 - Bifidobacteriaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --