Regulog BgrT4 - Bifidobacteriaceae
| Regulator type: | Transcription factor |
| Regulator family: | TetR |
| Regulation mode: | |
| Biological process: | Beta-glucosides utilization |
| Effector: | |
| Phylum: | Actinobacteria |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Bifidobacteriaceae
- By TF family - TetR
- By pathway - Beta-glucosides utilization
| Genome | Genes | Operons |
|---|---|---|
| Bifidobacterium adolescentis ATCC 15703 | 4 | 3 |
| Bifidobacterium angulatum DSM 20098 | ||
| Bifidobacterium animalis subsp. lactis AD011 | ||
| Bifidobacterium bifidum NCIMB 41171 | ||
| Bifidobacterium breve DSM 20213 | ||
| Bifidobacterium dentium Bd1 | 6 | 4 |
| Bifidobacterium gallicum DSM 20093 | ||
| Bifidobacterium longum NCC2705 | ||
| Bifidobacterium longum subsp. infantis ATCC 15697 | ||
| Gardnerella vaginalis 409-05 |
| Genes | Function | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||
| bglY |
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Bifidobacterium adolescentis ATCC 15703 Site: position = -60 score = 4.48808 sequence = TCTAACTTAGTAATTACT Gene: BAD_1204: Glucan 1,3-beta-glucosidase precursor (EC 3.2.1.58) |
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Bifidobacterium dentium Bd1 Site: position = -60 score = 6.01124 sequence = TTTAACTAAGTAGTTACT Gene: BDP_1678: Glucan 1,3-beta-glucosidase precursor (EC 3.2.1.58) |
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Glucan 1,3-beta-glucosidase precursor (EC 3.2.1.58) |
| xynB |
Gene: BAD_1203: Beta-xylosidase (EC 3.2.1.37) |
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Gene: BDP_1677: Beta-xylosidase (EC 3.2.1.37) |
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Beta-xylosidase (EC 3.2.1.37) |
| CRON 2. | |||||||||||
| bglX4 |
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Bifidobacterium dentium Bd1 Site: position = -60 score = 5.65957 sequence = ATTAACTATGTAGTTAAT Site: position = -102 score = 6.00292 sequence = ATTAACTACGTAGTTAAT Gene: BDP_0208: Beta-glucosidase (EC 3.2.1.21) |
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Beta-glucosidase (EC 3.2.1.21) |
| bglT4 |
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Gene: BDP_0209: Predicted beta-glucoside permease, MFS family |
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Predicted beta-glucoside permease, MFS family |
| CRON 3. | |||||||||||
| bgrT4 |
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Bifidobacterium adolescentis ATCC 15703 Site: position = -125 score = 5.96223 sequence = AGTAACTGCTTAGTTAAA Gene: BAD_1210: Predicted beta-glucoside specific transcriptional regulator, TetR family |
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Bifidobacterium dentium Bd1 Site: position = -123 score = 5.96223 sequence = AGTAACTGCTTAGTTAAA Gene: BDP_1682: Predicted beta-glucoside specific transcriptional regulator, TetR family |
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Predicted beta-glucoside specific transcriptional regulator, TetR family |
| CRON 4. | |||||||||||
| bglT |
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Bifidobacterium adolescentis ATCC 15703 Site: position = -248 score = 5.96223 sequence = TTTAACTAAGCAGTTACT Gene: BAD_1209: Predicted beta-glucoside permease, MFS family |
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Bifidobacterium dentium Bd1 Site: position = -221 score = 5.96223 sequence = TTTAACTAAGCAGTTACT Gene: BDP_1681: Predicted beta-glucoside permease, MFS family |
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Predicted beta-glucoside permease, MFS family |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |