Regulog BDP_2131 - Bifidobacteriaceae
| Regulator type: | Transcription factor |
| Regulator family: | LacI |
| Regulation mode: | |
| Biological process: | Carbohydrate metabolism |
| Effector: | |
| Phylum: | Actinobacteria |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Bifidobacteriaceae
- By TF family - LacI
- By pathway - Carbohydrate metabolism
| Genome | Genes | Operons |
|---|---|---|
| Bifidobacterium longum subsp. infantis ATCC 15697 | ||
| Bifidobacterium adolescentis ATCC 15703 | ||
| Bifidobacterium angulatum DSM 20098 | 4 | 1 |
| Bifidobacterium animalis subsp. lactis AD011 | ||
| Bifidobacterium bifidum NCIMB 41171 | ||
| Bifidobacterium breve DSM 20213 | ||
| Bifidobacterium dentium Bd1 | 7 | 4 |
| Bifidobacterium gallicum DSM 20093 | ||
| Bifidobacterium longum NCC2705 | ||
| Gardnerella vaginalis 409-05 |
| Genes | Function | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||
| BIFBRE_00795 |
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Bifidobacterium dentium Bd1 Site: position = -204 score = 5.96802 sequence = TTTTGA-(6)-CCGAAA Site: position = -194 score = 6.75391 sequence = ATCCGA-(6)-TCGAAA Gene: BDP_2131: Transcriptional regulator, LacI family |
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Transcriptional regulator, LacI family |
| CRON 2. | |||||||||||
| BIFANG_00464 |
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Gene: BIFANG_00464: Transcriptional regulator, LacI family |
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Bifidobacterium dentium Bd1 Site: position = -80 score = 6.54061 sequence = TTGCGA-(6)-TCGAAC Gene: BDP_2162: Transcriptional regulator, LacI family |
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Transcriptional regulator, LacI family |
| CRON 3. | |||||||||||
| BIFANG_00463 |
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Bifidobacterium angulatum DSM 20098 Site: position = -122 score = 7.47963 sequence = AATCGA-(6)-TCGAAA Gene: BIFANG_00463: ABC transporter, substrate-binding protein |
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Bifidobacterium dentium Bd1 Site: position = -119 score = 7.95215 sequence = TATCGA-(7)-TCGAAA Site: position = -108 score = 6.95673 sequence = TGTCGA-(6)-TTGAAA Gene: BDP_2161: ABC transporter, substrate-binding protein |
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ABC transporter, substrate-binding protein |
| BIFANG_00462 |
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Gene: BIFANG_00462: ABC-type sugar transport systems, permease components |
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Gene: BDP_2160: ABC-type sugar transport systems, permease components |
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ABC-type sugar transport systems, permease components |
| BIFANG_00461 |
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Gene: BIFANG_00461: ABC-type sugar transport systems, permease components |
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Gene: BDP_2159: ABC-type sugar transport systems, permease components |
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ABC-type sugar transport systems, permease components |
| agl1 |
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Gene: BIFANG_00460: Glycoside hydrolase, family 31 |
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Gene: BDP_2158: Glycoside hydrolase, family 31 |
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Glycoside hydrolase, family 31 |
| CRON 4. | |||||||||||
| BDP_2130 |
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Bifidobacterium dentium Bd1 Site: position = -211 score = 6.95673 sequence = TGTCGA-(6)-TCGACA Site: position = -221 score = 7.91015 sequence = TGTCGA-(6)-TCGAAA Gene: BDP_2130: Extracellular solute-binding protein, family 1 |
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Extracellular solute-binding protein, family 1 |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |