Regulog UdhR - Burkholderia
| Regulator type: | Transcription factor |
| Regulator family: | LacI |
| Regulation mode: | |
| Biological process: | Glucuronate utilization; Galacturonate utilization |
| Effector: | |
| Phylum: | Proteobacteria/Beta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By TF family - LacI
- By pathway - Glucuronate utilization
- By pathway - Galacturonate utilization
| Genome | Genes | Operons |
|---|---|---|
| Burkholderia cepacia AMMD | 3 | 3 |
| Burkholderia glumae BGR1 | ||
| Burkholderia mallei ATCC 23344 | ||
| Burkholderia sp. 383 | 3 | 3 |
| Burkholderia pseudomallei K96243 | ||
| Burkholderia phymatum STM815 | 3 | 3 |
| Burkholderia xenovorans LB400 | ||
| Burkholderia vietnamiensis G4 | 3 | 3 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| exuT |
*
Burkholderia cepacia AMMD Site: position = -144 score = 6.24171 sequence = TTGAAAAACGTTTTCCAT Gene: Bamb_5234: Hexuronate transporter, MFS superfamily |
|
|
*
Burkholderia sp. 383 Site: position = -134 score = 5.82359 sequence = CTGAAAAACGTTTTCCAG Gene: Bcep18194_B2718: Hexuronate transporter, MFS superfamily |
|
*
Burkholderia phymatum STM815 Site: position = -137 score = 6.55028 sequence = TAGAAAAACGTTTTCCAA Gene: Bphy_5675: Hexuronate transporter, MFS superfamily |
|
*
Burkholderia vietnamiensis G4 Site: position = -143 score = 4.58129 sequence = TTGGAAAAACGTTTTCCA Site: position = -142 score = 6.10904 sequence = TGGAAAAACGTTTTCCAC Gene: Bcep1808_3987: Hexuronate transporter, MFS superfamily |
Hexuronate transporter, MFS superfamily |
| CRON 2. | |||||||||
| udhR |
*
Burkholderia cepacia AMMD Site: position = -157 score = 6.66563 sequence = TCGGAAAACGTTTTCCAA Gene: Bamb_5235: Transcriptional regulator for hexuronate utilization, LacI family |
|
|
*
Burkholderia sp. 383 Site: position = -157 score = 6.66563 sequence = TCGGAAAACGTTTTCCAA Gene: Bcep18194_B2717: Transcriptional regulator for hexuronate utilization, LacI family |
|
*
Burkholderia phymatum STM815 Site: position = -106 score = 6.55608 sequence = TAGGAAAACGTTTTCCGA Gene: Bphy_5674: Transcriptional regulator for hexuronate utilization, LacI family |
|
*
Burkholderia vietnamiensis G4 Site: position = -157 score = 6.2475 sequence = CCGGAAAACGTTTTCCAA Gene: Bcep1808_3988: Transcriptional regulator for hexuronate utilization, LacI family |
Transcriptional regulator for hexuronate utilization, LacI family |
| CRON 3. | |||||||||
| udh |
*
Burkholderia cepacia AMMD Site: position = -86 score = 6.66563 sequence = TTGGAAAACGTTTTCCGA Gene: Bamb_5236: Uronate dehydrogenase (EC 1.1.1.203) |
Gene: bglu_1g09950: Uronate dehydrogenase (EC 1.1.1.203) |
|
*
Burkholderia sp. 383 Site: position = -53 score = 6.66563 sequence = TTGGAAAACGTTTTCCGA Gene: Bcep18194_B2716: Uronate dehydrogenase (EC 1.1.1.203) |
|
*
Burkholderia phymatum STM815 Site: position = -41 score = 6.55608 sequence = TCGGAAAACGTTTTCCTA Gene: Bphy_5673: Uronate dehydrogenase (EC 1.1.1.203) |
Gene: Bxe_B1800: Uronate dehydrogenase (EC 1.1.1.203) |
*
Burkholderia vietnamiensis G4 Site: position = -87 score = 6.2475 sequence = TTGGAAAACGTTTTCCGG Gene: Bcep1808_3989: Uronate dehydrogenase (EC 1.1.1.203) |
Uronate dehydrogenase (EC 1.1.1.203) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |