Regulog LacR - Bifidobacteriaceae
| Regulator type: | Transcription factor |
| Regulator family: | LacI |
| Regulation mode: | |
| Biological process: | Lactose utilization |
| Effector: | Lactose |
| Phylum: | Actinobacteria |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Bifidobacteriaceae
- By TF family - LacI
- By effector - Lactose
- By pathway - Lactose utilization
| Genome | Genes | Operons |
|---|---|---|
| Bifidobacterium longum subsp. infantis ATCC 15697 | 3 | 3 |
| Bifidobacterium adolescentis ATCC 15703 | 5 | 5 |
| Bifidobacterium angulatum DSM 20098 | 3 | 2 |
| Bifidobacterium animalis subsp. lactis AD011 | 1 | 1 |
| Bifidobacterium bifidum NCIMB 41171 | 1 | 1 |
| Bifidobacterium breve DSM 20213 | 4 | 4 |
| Bifidobacterium dentium Bd1 | 2 | 2 |
| Bifidobacterium gallicum DSM 20093 | ||
| Bifidobacterium longum NCC2705 | 2 | 2 |
| Gardnerella vaginalis 409-05 |
| Genes | Function | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||
| lacS |
Gene: Blon_2332: Lactose and galactose permease, GPH translocator family |
*2
Bifidobacterium adolescentis ATCC 15703 Site: position = -102 score = 4.40767 sequence = TAAATTTTACTAAACAGGG Gene: BAD_1188: Lactose and galactose permease, GPH translocator family Site: position = -103 score = 4.46791 sequence = TATATTTTGCTAATGGTTT Gene: BAD_1604: Lactose and galactose permease, GPH translocator family |
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Bifidobacterium angulatum DSM 20098 Site: position = -97 score = 5.0438 sequence = TTTTGTTTAGTAAACATTT Gene: BIFANG_00296: Lactose and galactose permease, GPH translocator family |
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Gene: BbifN4_010100008285: Lactose and galactose permease, GPH translocator family |
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Bifidobacterium breve DSM 20213 Site: position = -146 score = 4.12827 sequence = AGTTCTATACTGAAGTTTT Gene: BIFBRE_00378: Lactose and galactose permease, GPH translocator family |
*
Bifidobacterium dentium Bd1 Site: position = -270 score = 4.47189 sequence = AATCCTTTACTGATAAATA Gene: BDP_1646: Lactose and galactose permease, GPH translocator family |
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Lactose and galactose permease, GPH translocator family |
| CRON 2. | |||||||||||
| lacZ |
*
Bifidobacterium longum subsp. infantis ATCC 15697 Site: position = -233 score = 4.66236 sequence = AAAACATTAGTAAACGGAG Gene: Blon_2334: Beta-galactosidase (EC 3.2.1.23) |
*2
Bifidobacterium adolescentis ATCC 15703 Site: position = -241 score = 4.46791 sequence = AAACCATTAGCAAAATATA Site: position = -71 score = 3.65995 sequence = TATTATCTGGTAAAGGAAG Gene: BAD_1605: Beta-galactosidase (EC 3.2.1.23) Site: position = -83 score = 4.44881 sequence = AATTCATTACTAAACGGTC Gene: BAD_1582: Beta-galactosidase (EC 3.2.1.23) |
|
*
Bifidobacterium animalis subsp. lactis AD011 Site: position = -87 score = 3.6817 sequence = AATAGTTTACTATTGCGTA Site: position = -265 score = 4.36191 sequence = CATGATTTACTAAATTTGT Gene: BLA_0454: Beta-galactosidase (EC 3.2.1.23) |
Gene: BbifN4_010100008280: Beta-galactosidase (EC 3.2.1.23) |
*2
Bifidobacterium breve DSM 20213 Site: position = -56 score = 5.02157 sequence = TTATATTTAGTAAACATTT Site: position = -221 score = 3.88281 sequence = AAACCATAACTAAATGCAT Gene: BIFBRE_01480: Beta-galactosidase (EC 3.2.1.23) Site: position = -303 score = 4.12827 sequence = AAAACTTCAGTATAGAACT Gene: BIFBRE_00377: Beta-galactosidase (EC 3.2.1.23) |
*
Bifidobacterium dentium Bd1 Site: position = -253 score = 4.47189 sequence = TATTTATCAGTAAAGGATT Gene: BDP_1647: Beta-galactosidase (EC 3.2.1.23) |
|
*
Bifidobacterium longum NCC2705 Site: position = -235 score = 3.7029 sequence = AAAGCATTGGTAAACAAGG Site: position = -326 score = 3.8774 sequence = ATTGATTTTGTAAAGTAAG Gene: BL0978: Beta-galactosidase (EC 3.2.1.23) |
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Beta-galactosidase (EC 3.2.1.23) |
| CRON 3. | |||||||||||
| lacL |
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*
Bifidobacterium angulatum DSM 20098 Site: position = -83 score = 4.45329 sequence = GTTTGTTTAGTAAACAAAG Gene: BIFANG_00292: Beta-galactosidase, large subunit (EC 3.2.1.23) |
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Beta-galactosidase, large subunit (EC 3.2.1.23) |
| lacM |
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Gene: BIFANG_00293: Beta-galactosidase, small subunit (EC 3.2.1.23) |
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Beta-galactosidase, small subunit (EC 3.2.1.23) |
| CRON 4. | |||||||||||
| lacR |
*2
Bifidobacterium longum subsp. infantis ATCC 15697 Site: position = -32 score = 5.4154 sequence = AAACCTTTACTAAAGTTTG Gene: Blon_0516: Transcriptional regulator of lactose utilization, LacI family Site: position = -69 score = 4.18425 sequence = CACTATGTAGTAAAGTAAT Site: position = -56 score = 4.38951 sequence = AGTAATTTACTGAAATACT Gene: Blon_0641: Transcriptional regulator of lactose utilization, LacI family |
*2
Bifidobacterium adolescentis ATCC 15703 Gene: BAD_1606: Transcriptional regulator of lactose utilization, LacI family Site: position = -61 score = 3.92555 sequence = ATGGATTTAGTAATGCTTT Site: position = -49 score = 4.43241 sequence = ATGCTTTTACTAAAATCTG Gene: BAD_1189: Transcriptional regulator of lactose utilization, LacI family |
Gene: BIFANG_00295: Transcriptional regulator of lactose utilization, LacI family |
Gene: BLA_0455: Transcriptional regulator of lactose utilization, LacI family |
*
Bifidobacterium bifidum NCIMB 41171 Site: position = -32 score = 5.19241 sequence = AACCCTTTACTAAAGTTTG Gene: BbifN4_010100008270: Transcriptional regulator of lactose utilization, LacI family |
*2
Bifidobacterium breve DSM 20213 Gene: BIFBRE_01477: Transcriptional regulator of lactose utilization, LacI family Site: position = -32 score = 5.19241 sequence = AACCCTTTACTAAAGTTTG Gene: BIFBRE_00376: Transcriptional regulator of lactose utilization, LacI family |
Gene: BDP_1648: Transcriptional regulator of lactose utilization, LacI family |
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Bifidobacterium longum NCC2705 Site: position = -69 score = 4.21307 sequence = CACTATGTAGTAAAGTTAT Site: position = -56 score = 4.3558 sequence = AGTTATTTACTGAAATACT Gene: BL1774: Transcriptional regulator of lactose utilization, LacI family |
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Transcriptional regulator of lactose utilization, LacI family |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |