Regulog GalR2 - Bifidobacteriaceae
| Regulator type: | Transcription factor |
| Regulator family: | LacI |
| Regulation mode: | |
| Biological process: | Galactose utilization |
| Effector: | Galactose |
| Phylum: | Actinobacteria |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Bifidobacteriaceae
- By TF family - LacI
- By effector - Galactose
- By pathway - Galactose utilization
| Genome | Genes | Operons |
|---|---|---|
| Bifidobacterium longum subsp. infantis ATCC 15697 | ||
| Bifidobacterium adolescentis ATCC 15703 | ||
| Bifidobacterium angulatum DSM 20098 | 4 | 2 |
| Bifidobacterium animalis subsp. lactis AD011 | ||
| Bifidobacterium bifidum NCIMB 41171 | ||
| Bifidobacterium breve DSM 20213 | ||
| Bifidobacterium dentium Bd1 | ||
| Bifidobacterium gallicum DSM 20093 | ||
| Bifidobacterium longum NCC2705 | ||
| Gardnerella vaginalis 409-05 |
| Genes | Function | ||||||||||
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| CRON 1. | |||||||||||
| galK |
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Bifidobacterium angulatum DSM 20098 Site: position = -364 score = 5.11274 sequence = AGAATTTTAGTAAACATAC Site: position = -176 score = 5.42209 sequence = GATTATTTACTAAAATATT Site: position = -164 score = 4.53491 sequence = AAATATTTTGTAAAGAAAT Gene: BIFANG_00289: Galactokinase (EC 2.7.1.6) |
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Galactokinase (EC 2.7.1.6) |
| galT |
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Gene: BIFANG_00290: Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10) |
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Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10) |
| galE |
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Gene: BIFANG_00291: UDP-glucose 4-epimerase (EC 5.1.3.2) |
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UDP-glucose 4-epimerase (EC 5.1.3.2) |
| CRON 2. | |||||||||||
| galR2 |
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Bifidobacterium angulatum DSM 20098 Site: position = -264 score = 5.60379 sequence = AATATTTTAGTAAATAATC Site: position = -76 score = 5.19195 sequence = GTATGTTTACTAAAATTCT Gene: BIFANG_00288: Galactose utilization transcriptional regulator, LacI family |
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Galactose utilization transcriptional regulator, LacI family |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |