Regulog BL0176 - Bifidobacteriaceae

Properties
Regulator type:	Transcription factor
Regulator family:	LacI
Regulation mode:
Biological process:	Carbohydrate metabolism
Effector:
Phylum:	Actinobacteria
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 9 sites [see more]

Member of regulog collections

By taxonomy - Bifidobacteriaceae
By TF family - LacI
By pathway - Carbohydrate metabolism

Statistics of regulated genes
Genome	Genes	Operons
Bifidobacterium adolescentis ATCC 15703	4	2
Bifidobacterium angulatum DSM 20098
Bifidobacterium animalis subsp. lactis AD011
Bifidobacterium bifidum NCIMB 41171
Bifidobacterium breve DSM 20213
Bifidobacterium dentium Bd1	4	2
Bifidobacterium gallicum DSM 20093
Bifidobacterium longum NCC2705	4	4
Gardnerella vaginalis 409-05
Bifidobacterium longum subsp. infantis ATCC 15697

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes											Function

CRON 1.
PF07944	Bifidobacterium adolescentis ATCC 15703 Gene: BAD_1529: Putative glycosyl hydrolase of unknown function, DUF1680	Bifidobacterium angulatum DSM 20098	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213	Bifidobacterium dentium Bd1 Gene: BDP_2104: Putative glycosyl hydrolase of unknown function, DUF1680	Bifidobacterium gallicum DSM 20093	* Bifidobacterium longum NCC2705 Site: position = -55 score = 6.1587 sequence = CATATGTGCCGATACATATT Gene: BL0174: Putative glycosyl hydrolase of unknown function, DUF1680	Gardnerella vaginalis 409-05	Bifidobacterium longum subsp. infantis ATCC 15697	Putative glycosyl hydrolase of unknown function, DUF1680

CRON 2.
nagA	* Bifidobacterium adolescentis ATCC 15703 Site: position = -92 score = 6.53414 sequence = TATATGTAACGATACATATA Gene: BAD_1525: Alpha-N-acetylgalactosaminidase (EC 3.2.1.49)	Bifidobacterium angulatum DSM 20098	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213	* Bifidobacterium dentium Bd1 Site: position = -157 score = 6.77351 sequence = AATATGTACCGTTACATATA Gene: BDP_2092: Alpha-N-acetylgalactosaminidase (EC 3.2.1.49)	Bifidobacterium gallicum DSM 20093	* Bifidobacterium longum NCC2705 Site: position = -183 score = 6.43625 sequence = AATATGTAACGGTACATACG Gene: BL0177: Alpha-N-acetylgalactosaminidase (EC 3.2.1.49)	Gardnerella vaginalis 409-05	Bifidobacterium longum subsp. infantis ATCC 15697	Alpha-N-acetylgalactosaminidase (EC 3.2.1.49)
abfA	Bifidobacterium adolescentis ATCC 15703 Gene: BAD_1524: Alpha-N-arabinofuranosidase (EC 3.2.1.55)	Bifidobacterium angulatum DSM 20098	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213	Bifidobacterium dentium Bd1 Gene: BDP_2091: Alpha-N-arabinofuranosidase (EC 3.2.1.55)	Bifidobacterium gallicum DSM 20093	* Bifidobacterium longum NCC2705 Site: position = -197 score = 5.74783 sequence = AATATGTAACGGTACGTGTG Site: position = -75 score = 6.84024 sequence = AATATGTACCGTTACATATT Gene: BL0181: Alpha-N-arabinofuranosidase (EC 3.2.1.55)	Gardnerella vaginalis 409-05	Bifidobacterium longum subsp. infantis ATCC 15697	Alpha-N-arabinofuranosidase (EC 3.2.1.55)

CRON 3.
BAD_1526	* Bifidobacterium adolescentis ATCC 15703 Site: position = -148 score = 6.53414 sequence = TATATGTATCGTTACATATA Gene: BAD_1526: Transcriptional regulator, LacI family	Bifidobacterium angulatum DSM 20098	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213	* Bifidobacterium dentium Bd1 Site: position = -175 score = 6.77351 sequence = TATATGTAACGGTACATATT Gene: BDP_2093: Transcriptional regulator, LacI family	Bifidobacterium gallicum DSM 20093	* Bifidobacterium longum NCC2705 Site: position = -210 score = 6.43625 sequence = CGTATGTACCGTTACATATT Gene: BL0176: Transcriptional regulator, LacI family	Gardnerella vaginalis 409-05	Bifidobacterium longum subsp. infantis ATCC 15697	Transcriptional regulator, LacI family
xynD	Bifidobacterium adolescentis ATCC 15703 Gene: BAD_1527: Endo-1,4-beta-xylanase	Bifidobacterium angulatum DSM 20098	Bifidobacterium animalis subsp. lactis AD011	Bifidobacterium bifidum NCIMB 41171	Bifidobacterium breve DSM 20213	Bifidobacterium dentium Bd1 Gene: BDP_2094: Endo-1,4-beta-xylanase	Bifidobacterium gallicum DSM 20093	Bifidobacterium longum NCC2705	Gardnerella vaginalis 409-05	Bifidobacterium longum subsp. infantis ATCC 15697	Endo-1,4-beta-xylanase

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog BL0176 - Bifidobacteriaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --