Regulog Bll2166 - Rhizobiales

Properties
Regulator type:	Transcription factor
Regulator family:	LysR
Regulation mode:
Biological process:
Effector:
Phylum:	Proteobacteria/Alpha
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 9 sites [see more]

Member of regulog collections

By taxonomy - Rhizobiales
By TF family - LysR

Statistics of regulated genes
Genome	Genes	Operons
Agrobacterium tumefaciens str. C58 (Cereon)
Azorhizobium caulinodans ORS 571
Bartonella quintana str. Toulouse
Bradyrhizobium japonicum USDA 110	6	2
Bradyrhizobium sp. BTAi1	10	2
Brucella melitensis 16M
Mesorhizobium loti MAFF303099
Mesorhizobium sp. BNC1
Nitrobacter winogradskyi Nb-255
Rhizobium etli CFN 42
Rhizobium leguminosarum bv. viciae 3841
Rhizobium sp. NGR234	10	2
Rhodopseudomonas palustris CGA009
Sinorhizobium meliloti 1021
Xanthobacter autotrophicus Py2	7	2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																Function

CRON 1.
blr2167	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	* Bradyrhizobium japonicum USDA 110 Site: position = -102 score = 5.60282 sequence = AGTGAACCAGATTCATC Site: position = -199 score = 4.81735 sequence = GGTGAAGCTCATTCGCC Gene: blr2167: putative short chain dehydrogenase/reductase	* Bradyrhizobium sp. BTAi1 Site: position = -101 score = 5.60282 sequence = AGTGAACCAGATTCATC Gene: BBta_3267: putative short chain dehydrogenase/reductase	Brucella melitensis 16M	Mesorhizobium loti MAFF303099 Gene: mll5766: putative short chain dehydrogenase/reductase	2 Mesorhizobium sp. BNC1 Gene: Meso_3619: putative short chain dehydrogenase/reductase Gene: Meso_3616: putative short chain dehydrogenase/reductase	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	* Rhizobium sp. NGR234 Site: position = -141 score = 5.68254 sequence = AGTGAATCAGATTCACC Gene: NGR_a02430: putative short chain dehydrogenase/reductase	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	* Xanthobacter autotrophicus Py2 Site: position = -1 score = 5.35802 sequence = GATGAACCCAGTTCACC Gene: Xaut_1541: putative short chain dehydrogenase/reductase	putative short chain dehydrogenase/reductase
tktA	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110 Gene: blr2168: Transketolase, N-terminal section (EC 2.2.1.1)	Bradyrhizobium sp. BTAi1 Gene: BBta_3268: Transketolase, N-terminal section (EC 2.2.1.1)	Brucella melitensis 16M	Mesorhizobium loti MAFF303099 Gene: mll5765: Transketolase, N-terminal section (EC 2.2.1.1)	Mesorhizobium sp. BNC1 Gene: Meso_3617: Transketolase, N-terminal section (EC 2.2.1.1)	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234 Gene: NGR_a02440: Transketolase, N-terminal section (EC 2.2.1.1)	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2 Gene: Xaut_1540: Transketolase, N-terminal section (EC 2.2.1.1)	Transketolase, N-terminal section (EC 2.2.1.1)
tktB	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110 Gene: blr2169: Transketolase, C-terminal section (EC 2.2.1.1)	Bradyrhizobium sp. BTAi1 Gene: BBta_3269: Transketolase, C-terminal section (EC 2.2.1.1)	Brucella melitensis 16M	Mesorhizobium loti MAFF303099 Gene: mll5764: Transketolase, C-terminal section (EC 2.2.1.1)	Mesorhizobium sp. BNC1 Gene: Meso_3618: Transketolase, C-terminal section (EC 2.2.1.1)	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234 Gene: NGR_a02450: Transketolase, C-terminal section (EC 2.2.1.1)	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2 Gene: Xaut_1539: Transketolase, C-terminal section (EC 2.2.1.1)	Transketolase, C-terminal section (EC 2.2.1.1)
blr2170	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110 Gene: blr2170: putative TRAP-type C4-dicarboxylate transport system, periplasmic component	Bradyrhizobium sp. BTAi1 Gene: BBta_3270: putative TRAP-type C4-dicarboxylate transport system, periplasmic component	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1 Gene: Meso_3614: putative TRAP-type C4-dicarboxylate transport system, periplasmic component	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234 Gene: NGR_a02460: putative TRAP-type C4-dicarboxylate transport system, periplasmic component	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2 Gene: Xaut_1537: putative TRAP-type C4-dicarboxylate transport system, periplasmic component	putative TRAP-type C4-dicarboxylate transport system, periplasmic component
blr2171	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110 Gene: blr2171: TRAP-type C4-dicarboxylate transport system, large permease component	Bradyrhizobium sp. BTAi1 Gene: BBta_3271: TRAP-type C4-dicarboxylate transport system, large permease component	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1 Gene: Meso_3615: TRAP-type C4-dicarboxylate transport system, large permease component	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234 Gene: NGR_a02470: TRAP-type C4-dicarboxylate transport system, large permease component	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2 Gene: Xaut_1536: TRAP-type C4-dicarboxylate transport system, large permease component	TRAP-type C4-dicarboxylate transport system, large permease component
BBta_3272	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1 Gene: BBta_3272: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)	Brucella melitensis 16M	Mesorhizobium loti MAFF303099 Gene: mll5770: ABC TRANSPORTER ATP-BINDING PROTEIN	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234 Gene: NGR_a02480: probable ABC transporter ATP-binding protein	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2	Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)
BBta_3273	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1 Gene: BBta_3273: Probable ABC transporter permease protein y4mJ	Brucella melitensis 16M	Mesorhizobium loti MAFF303099 Gene: mll5769: ABC TRANSPORTER PERMEASE PROTEIN	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234 Gene: NGR_a02490: probable ABC transporter permease	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2	Probable ABC transporter permease protein y4mJ
BBta_3274	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1 Gene: BBta_3274: Probable ABC transporter periplasmic-binding protein y4mI precursor	Brucella melitensis 16M	Mesorhizobium loti MAFF303099 Gene: mll5768: ABC TRANSPORTER PERIPLASMIC BINDING PROTEIN	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234 Gene: NGR_a02500: probable ABC transporter periplasmic binding protein	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2	Probable ABC transporter periplasmic-binding protein y4mI precursor
BBta_3275	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1 Gene: BBta_3275: Uncharacterized protein y4mH	Brucella melitensis 16M	Mesorhizobium loti MAFF303099 Gene: mll5767: Y4mH	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234 Gene: NGR_a02510: hypothetical 33.9 kd protein	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2	Uncharacterized protein y4mH
SMc00274	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2 Gene: Xaut_1538: 3-hydroxyisobutyrate dehydrogenase	2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60)

CRON 2.
bll2166	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	* Bradyrhizobium japonicum USDA 110 Site: position = -23 score = 5.60282 sequence = GATGAATCTGGTTCACT Gene: bll2166: Transcriptional regulator, LysR family	* Bradyrhizobium sp. BTAi1 Site: position = -23 score = 5.60282 sequence = GATGAATCTGGTTCACT Gene: BBta_3266: Transcriptional regulator, LysR family	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	* Rhizobium sp. NGR234 Site: position = -23 score = 5.68254 sequence = GGTGAATCTGATTCACT Gene: NGR_a02420: Transcriptional regulator, LysR family	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	* Xanthobacter autotrophicus Py2 Site: position = -27 score = 5.35802 sequence = GGTGAACTGGGTTCATC Gene: Xaut_1542: Transcriptional regulator, LysR family	Transcriptional regulator, LysR family

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog Bll2166 - Rhizobiales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --