Regulog Bll2166 - Rhizobiales
| Regulator type: | Transcription factor |
| Regulator family: | LysR |
| Regulation mode: | |
| Biological process: | |
| Effector: | |
| Phylum: | Proteobacteria/Alpha |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Rhizobiales
- By TF family - LysR
| Genome | Genes | Operons |
|---|---|---|
| Agrobacterium tumefaciens str. C58 (Cereon) | ||
| Azorhizobium caulinodans ORS 571 | ||
| Bartonella quintana str. Toulouse | ||
| Bradyrhizobium japonicum USDA 110 | 6 | 2 |
| Bradyrhizobium sp. BTAi1 | 10 | 2 |
| Brucella melitensis 16M | ||
| Mesorhizobium loti MAFF303099 | ||
| Mesorhizobium sp. BNC1 | ||
| Nitrobacter winogradskyi Nb-255 | ||
| Rhizobium etli CFN 42 | ||
| Rhizobium leguminosarum bv. viciae 3841 | ||
| Rhizobium sp. NGR234 | 10 | 2 |
| Rhodopseudomonas palustris CGA009 | ||
| Sinorhizobium meliloti 1021 | ||
| Xanthobacter autotrophicus Py2 | 7 | 2 |
| Genes | Function | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||||||
| blr2167 |
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Bradyrhizobium japonicum USDA 110 Site: position = -102 score = 5.60282 sequence = AGTGAACCAGATTCATC Site: position = -199 score = 4.81735 sequence = GGTGAAGCTCATTCGCC Gene: blr2167: putative short chain dehydrogenase/reductase |
*
Bradyrhizobium sp. BTAi1 Site: position = -101 score = 5.60282 sequence = AGTGAACCAGATTCATC Gene: BBta_3267: putative short chain dehydrogenase/reductase |
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Gene: mll5766: putative short chain dehydrogenase/reductase |
2
Mesorhizobium sp. BNC1 Gene: Meso_3619: putative short chain dehydrogenase/reductase Gene: Meso_3616: putative short chain dehydrogenase/reductase |
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Rhizobium sp. NGR234 Site: position = -141 score = 5.68254 sequence = AGTGAATCAGATTCACC Gene: NGR_a02430: putative short chain dehydrogenase/reductase |
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Xanthobacter autotrophicus Py2 Site: position = -1 score = 5.35802 sequence = GATGAACCCAGTTCACC Gene: Xaut_1541: putative short chain dehydrogenase/reductase |
putative short chain dehydrogenase/reductase |
| tktA |
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Gene: blr2168: Transketolase, N-terminal section (EC 2.2.1.1) |
Gene: BBta_3268: Transketolase, N-terminal section (EC 2.2.1.1) |
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Gene: mll5765: Transketolase, N-terminal section (EC 2.2.1.1) |
Gene: Meso_3617: Transketolase, N-terminal section (EC 2.2.1.1) |
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Gene: NGR_a02440: Transketolase, N-terminal section (EC 2.2.1.1) |
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Gene: Xaut_1540: Transketolase, N-terminal section (EC 2.2.1.1) |
Transketolase, N-terminal section (EC 2.2.1.1) |
| tktB |
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Gene: blr2169: Transketolase, C-terminal section (EC 2.2.1.1) |
Gene: BBta_3269: Transketolase, C-terminal section (EC 2.2.1.1) |
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Gene: mll5764: Transketolase, C-terminal section (EC 2.2.1.1) |
Gene: Meso_3618: Transketolase, C-terminal section (EC 2.2.1.1) |
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Gene: NGR_a02450: Transketolase, C-terminal section (EC 2.2.1.1) |
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Gene: Xaut_1539: Transketolase, C-terminal section (EC 2.2.1.1) |
Transketolase, C-terminal section (EC 2.2.1.1) |
| blr2170 |
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Gene: blr2170: putative TRAP-type C4-dicarboxylate transport system, periplasmic component |
Gene: BBta_3270: putative TRAP-type C4-dicarboxylate transport system, periplasmic component |
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Gene: Meso_3614: putative TRAP-type C4-dicarboxylate transport system, periplasmic component |
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Gene: NGR_a02460: putative TRAP-type C4-dicarboxylate transport system, periplasmic component |
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Gene: Xaut_1537: putative TRAP-type C4-dicarboxylate transport system, periplasmic component |
putative TRAP-type C4-dicarboxylate transport system, periplasmic component |
| blr2171 |
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Gene: blr2171: TRAP-type C4-dicarboxylate transport system, large permease component |
Gene: BBta_3271: TRAP-type C4-dicarboxylate transport system, large permease component |
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Gene: Meso_3615: TRAP-type C4-dicarboxylate transport system, large permease component |
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Gene: NGR_a02470: TRAP-type C4-dicarboxylate transport system, large permease component |
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Gene: Xaut_1536: TRAP-type C4-dicarboxylate transport system, large permease component |
TRAP-type C4-dicarboxylate transport system, large permease component |
| BBta_3272 |
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Gene: BBta_3272: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1) |
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Gene: mll5770: ABC TRANSPORTER ATP-BINDING PROTEIN |
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Gene: NGR_a02480: probable ABC transporter ATP-binding protein |
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Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1) |
| BBta_3273 |
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Gene: BBta_3273: Probable ABC transporter permease protein y4mJ |
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Gene: mll5769: ABC TRANSPORTER PERMEASE PROTEIN |
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Gene: NGR_a02490: probable ABC transporter permease |
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Probable ABC transporter permease protein y4mJ |
| BBta_3274 |
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Gene: BBta_3274: Probable ABC transporter periplasmic-binding protein y4mI precursor |
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Gene: mll5768: ABC TRANSPORTER PERIPLASMIC BINDING PROTEIN |
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Gene: NGR_a02500: probable ABC transporter periplasmic binding protein |
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Probable ABC transporter periplasmic-binding protein y4mI precursor |
| BBta_3275 |
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Gene: BBta_3275: Uncharacterized protein y4mH |
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Gene: mll5767: Y4mH |
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Gene: NGR_a02510: hypothetical 33.9 kd protein |
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Uncharacterized protein y4mH |
| SMc00274 |
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Gene: Xaut_1538: 3-hydroxyisobutyrate dehydrogenase |
2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60) |
| CRON 2. | ||||||||||||||||
| bll2166 |
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*
Bradyrhizobium japonicum USDA 110 Site: position = -23 score = 5.60282 sequence = GATGAATCTGGTTCACT Gene: bll2166: Transcriptional regulator, LysR family |
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Bradyrhizobium sp. BTAi1 Site: position = -23 score = 5.60282 sequence = GATGAATCTGGTTCACT Gene: BBta_3266: Transcriptional regulator, LysR family |
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Rhizobium sp. NGR234 Site: position = -23 score = 5.68254 sequence = GGTGAATCTGATTCACT Gene: NGR_a02420: Transcriptional regulator, LysR family |
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Xanthobacter autotrophicus Py2 Site: position = -27 score = 5.35802 sequence = GGTGAACTGGGTTCATC Gene: Xaut_1542: Transcriptional regulator, LysR family |
Transcriptional regulator, LysR family |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |